Wall clock time and date at job start Mon Mar 30 2020 02:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86809 * 119.99677 * 2 1 4 4 H 1.48503 * 109.46690 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47125 * 300.00033 * 3 2 1 6 6 H 1.48497 * 109.47037 * 60.00561 * 3 2 1 7 7 C 1.38808 * 120.00313 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00460 * 160.41048 * 7 2 1 9 9 N 1.36942 * 119.99665 * 340.40823 * 7 2 1 10 10 C 1.46501 * 120.00163 * 320.37846 * 9 7 2 11 11 C 1.53004 * 109.46753 * 270.27569 * 10 9 7 12 12 N 1.46501 * 109.46753 * 179.97438 * 11 10 9 13 13 C 1.34771 * 119.99914 * 179.97438 * 12 11 10 14 14 O 1.21512 * 120.00243 * 0.02562 * 13 12 11 15 15 C 1.48156 * 120.00317 * 179.97438 * 13 12 11 16 16 C 1.39822 * 120.91728 * 359.71979 * 15 13 12 17 17 C 1.38151 * 118.99576 * 179.79687 * 16 15 13 18 18 N 1.31811 * 120.89944 * 0.48958 * 17 16 15 19 19 C 1.31811 * 122.04746 * 359.73680 * 18 17 16 20 20 C 1.38152 * 120.89536 * 0.02586 * 19 18 17 21 21 C 1.46496 * 119.99865 * 140.65000 * 9 7 2 22 22 C 1.52998 * 117.49961 * 3.01702 * 21 9 7 23 23 C 1.52996 * 60.00033 * 252.50937 * 22 21 9 24 24 H 0.96999 * 120.00117 * 355.01703 * 1 2 3 25 25 H 1.09000 * 109.47051 * 30.26911 * 10 9 7 26 26 H 1.08993 * 109.47014 * 150.27642 * 10 9 7 27 27 H 1.09000 * 109.46804 * 299.99492 * 11 10 9 28 28 H 1.08993 * 109.47300 * 60.00248 * 11 10 9 29 29 H 0.97003 * 120.00063 * 359.97438 * 12 11 10 30 30 H 1.07999 * 120.49941 * 0.02562 * 16 15 13 31 31 H 1.08002 * 119.54616 * 180.22709 * 17 16 15 32 32 H 1.08002 * 119.55228 * 180.02562 * 19 18 17 33 33 H 1.08004 * 120.49230 * 180.02562 * 20 19 18 34 34 H 1.09001 * 115.54873 * 148.71878 * 21 9 7 35 35 H 1.09000 * 117.49746 * 359.97438 * 22 21 9 36 36 H 1.09008 * 117.50167 * 145.01934 * 22 21 9 37 37 H 1.09005 * 117.49247 * 252.51021 * 23 22 21 38 38 H 1.08993 * 117.52104 * 107.48262 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0434 -1.2290 -0.3141 9 7 1.3850 -2.3539 0.3966 10 6 0.4637 -2.3320 1.5354 11 6 1.2404 -2.6049 2.8251 12 7 0.3192 -2.5824 3.9640 13 6 0.7832 -2.7998 5.2104 14 8 1.9658 -3.0139 5.3898 15 6 -0.1483 -2.7765 6.3623 16 6 -1.5114 -2.5251 6.1789 17 6 -2.3450 -2.5169 7.2805 18 7 -1.8695 -2.7321 8.4909 19 6 -0.5910 -2.9682 8.7083 20 6 0.3123 -2.9994 7.6634 21 6 1.6421 -3.6091 -0.3136 22 6 2.6719 -3.5827 -1.4447 23 6 1.1818 -3.7041 -1.7696 24 1 -0.4850 0.8369 0.0730 25 1 -0.0128 -1.3537 1.5985 26 1 -0.2984 -3.0995 1.4009 27 1 1.7169 -3.5832 2.7620 28 1 2.0025 -1.8374 2.9596 29 1 -0.6248 -2.4111 3.8209 30 1 -1.9073 -2.3439 5.1905 31 1 -3.4001 -2.3274 7.1486 32 1 -0.2450 -3.1396 9.7169 33 1 1.3583 -3.1939 7.8489 34 1 1.5833 -4.5129 0.2929 35 1 3.1579 -2.6313 -1.6608 36 1 3.2910 -4.4693 -1.5827 37 1 0.8205 -4.6706 -2.1211 38 1 0.6873 -2.8329 -2.1989 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567435557.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:48 Heat of formation + Delta-G solvation = 48.962356 kcal Electronic energy + Delta-G solvation = -20480.534251 eV Core-core repulsion = 17324.643306 eV Total energy + Delta-G solvation = -3155.890945 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.58415 -38.89963 -37.14300 -34.92994 -33.41488 -32.70092 -31.45039 -30.79000 -27.84830 -25.05511 -24.10169 -23.52318 -21.84355 -21.31284 -20.58899 -19.82348 -18.23516 -16.68040 -16.30707 -15.84027 -15.58456 -15.27991 -15.19433 -15.03794 -14.51890 -14.08906 -13.95129 -13.78505 -13.33889 -12.82865 -12.69581 -12.02488 -11.85225 -11.63841 -11.11477 -10.80715 -10.77413 -10.40180 -10.25026 -10.16088 -10.03234 -9.91012 -9.67818 -9.59862 -9.40179 -9.33083 -8.71490 -8.57138 -6.66142 -5.91110 -3.57905 0.60596 0.89624 2.95987 3.24263 3.30023 3.37626 3.40960 3.75290 4.21495 4.35798 4.51937 4.65589 4.81438 4.88457 4.90705 5.21713 5.23597 5.32205 5.54419 5.65082 5.86119 5.87183 5.98640 6.00814 6.14504 6.22343 6.39515 6.40897 6.46657 6.55601 6.69499 6.88404 7.01328 7.19136 7.38474 7.68155 7.70689 7.71602 8.32501 8.38526 9.02544 9.63013 10.20714 11.04592 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019351 B = 0.004222 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.641478 B = 6629.633067 C = 7255.083645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.017 3.983 3 Si 0.896 3.104 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.262 4.262 8 H 0.067 0.933 9 N -0.547 5.547 10 C 0.141 3.859 11 C 0.097 3.903 12 N -0.709 5.709 13 C 0.548 3.452 14 O -0.536 6.536 15 C -0.080 4.080 16 C -0.142 4.142 17 C 0.095 3.905 18 N -0.475 5.475 19 C 0.093 3.907 20 C -0.119 4.119 21 C 0.118 3.882 22 C -0.194 4.194 23 C -0.218 4.218 24 H 0.255 0.745 25 H 0.099 0.901 26 H 0.033 0.967 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.398 0.602 30 H 0.142 0.858 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.147 0.853 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.244 -5.806 10.851 13.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.184 4.184 3 Si 0.725 3.275 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.213 1.213 7 C -0.391 4.391 8 H 0.084 0.916 9 N -0.264 5.264 10 C 0.014 3.986 11 C -0.028 4.028 12 N -0.360 5.360 13 C 0.333 3.667 14 O -0.413 6.413 15 C -0.092 4.092 16 C -0.163 4.163 17 C -0.062 4.062 18 N -0.185 5.185 19 C -0.064 4.064 20 C -0.139 4.139 21 C 0.009 3.991 22 C -0.232 4.232 23 C -0.259 4.259 24 H 0.065 0.935 25 H 0.117 0.883 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.233 0.767 30 H 0.160 0.840 31 H 0.179 0.821 32 H 0.179 0.821 33 H 0.165 0.835 34 H 0.105 0.895 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.065 -5.777 11.560 13.547 hybrid contribution 0.523 0.983 -0.914 1.440 sum -3.542 -4.794 10.646 12.202 Atomic orbital electron populations 1.70054 1.05538 1.26219 1.50659 1.25244 0.95052 0.98897 0.99232 0.86344 0.80006 0.83771 0.77413 1.19838 1.21461 1.21302 1.19103 0.93453 0.84880 1.41703 0.91584 1.43158 1.51000 1.03444 1.28766 1.21012 0.91089 1.03023 0.83490 1.22457 0.93521 1.01369 0.85475 1.46036 1.12775 1.70588 1.06556 1.18196 0.87588 0.77908 0.82995 1.90767 1.16393 1.49030 1.85151 1.20576 0.94058 0.99692 0.94837 1.22440 0.93224 0.99192 1.01400 1.22762 1.00497 0.95664 0.87282 1.67553 1.16037 1.10069 1.24816 1.22792 0.88334 0.95801 0.99477 1.22341 1.02310 0.97413 0.91872 1.21245 1.00980 0.90286 0.86557 1.23025 0.92186 1.01949 1.06035 1.23337 0.96898 1.00998 1.04689 0.93514 0.88298 0.94819 0.92726 0.91219 0.76729 0.84033 0.82097 0.82126 0.83490 0.89542 0.88396 0.90712 0.91212 0.88928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.73 11.50 55.49 0.64 -23.09 16 2 C 0.02 0.44 4.98 -17.43 -0.09 0.35 16 3 Si 0.90 20.80 29.60 -169.99 -5.03 15.77 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.26 -6.75 8.47 -15.06 -0.13 -6.88 16 8 H 0.07 1.73 6.75 -52.49 -0.35 1.38 16 9 N -0.55 -12.78 2.75 -165.67 -0.45 -13.23 16 10 C 0.14 2.96 5.45 -4.04 -0.02 2.94 16 11 C 0.10 1.85 6.00 -4.04 -0.02 1.83 16 12 N -0.71 -11.18 5.51 -61.15 -0.34 -11.51 16 13 C 0.55 8.93 7.80 -12.19 -0.10 8.83 16 14 O -0.54 -10.62 16.45 5.35 0.09 -10.54 16 15 C -0.08 -1.04 5.91 -104.65 -0.62 -1.66 16 16 C -0.14 -1.49 9.62 -39.02 -0.38 -1.87 16 17 C 0.09 0.94 11.17 -17.59 -0.20 0.74 16 18 N -0.48 -5.37 10.33 -13.30 -0.14 -5.51 16 19 C 0.09 0.95 11.17 -17.59 -0.20 0.76 16 20 C -0.12 -1.39 9.68 -39.03 -0.38 -1.77 16 21 C 0.12 2.44 6.56 -67.93 -0.45 1.99 16 22 C -0.19 -3.74 9.80 -26.73 -0.26 -4.01 16 23 C -0.22 -4.33 10.36 -26.73 -0.28 -4.60 16 24 H 0.25 6.62 8.32 -40.82 -0.34 6.28 16 25 H 0.10 2.33 5.60 -51.93 -0.29 2.04 16 26 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 29 H 0.40 5.18 6.62 -40.82 -0.27 4.91 16 30 H 0.14 1.19 6.54 -52.49 -0.34 0.84 16 31 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.15 1.65 7.74 -52.48 -0.41 1.24 16 34 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.10 2.07 6.46 -51.93 -0.34 1.73 16 36 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 LS Contribution 325.50 15.07 4.91 4.91 Total: -1.00 -30.45 325.50 -8.37 -38.82 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -4.94 Total: 7.74 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -3.11 Total: -3.34 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: -0.29 Total: -53.35 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.45 -8.37 -38.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567435557.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.780 kcal (2) G-P(sol) polarization free energy of solvation -30.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds