Wall clock time and date at job start Mon Mar 30 2020 02:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86809 * 119.99677 * 2 1 4 4 H 1.48503 * 109.46690 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47125 * 300.00033 * 3 2 1 6 6 H 1.48497 * 109.47037 * 60.00561 * 3 2 1 7 7 C 1.38808 * 120.00313 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00460 * 160.41048 * 7 2 1 9 9 N 1.36942 * 119.99665 * 340.40823 * 7 2 1 10 10 C 1.46501 * 120.00163 * 320.37846 * 9 7 2 11 11 C 1.53004 * 109.46753 * 270.27569 * 10 9 7 12 12 N 1.46501 * 109.46753 * 179.97438 * 11 10 9 13 13 C 1.34771 * 119.99914 * 179.97438 * 12 11 10 14 14 O 1.21512 * 120.00243 * 0.02562 * 13 12 11 15 15 C 1.48156 * 120.00317 * 179.97438 * 13 12 11 16 16 C 1.39822 * 120.91728 * 359.71979 * 15 13 12 17 17 C 1.38151 * 118.99576 * 179.79687 * 16 15 13 18 18 N 1.31811 * 120.89944 * 0.48958 * 17 16 15 19 19 C 1.31811 * 122.04746 * 359.73680 * 18 17 16 20 20 C 1.38152 * 120.89536 * 0.02586 * 19 18 17 21 21 C 1.46496 * 119.99865 * 140.65000 * 9 7 2 22 22 C 1.52998 * 117.49961 * 3.01702 * 21 9 7 23 23 C 1.52996 * 60.00033 * 252.50937 * 22 21 9 24 24 H 0.96999 * 120.00117 * 355.01703 * 1 2 3 25 25 H 1.09000 * 109.47051 * 30.26911 * 10 9 7 26 26 H 1.08993 * 109.47014 * 150.27642 * 10 9 7 27 27 H 1.09000 * 109.46804 * 299.99492 * 11 10 9 28 28 H 1.08993 * 109.47300 * 60.00248 * 11 10 9 29 29 H 0.97003 * 120.00063 * 359.97438 * 12 11 10 30 30 H 1.07999 * 120.49941 * 0.02562 * 16 15 13 31 31 H 1.08002 * 119.54616 * 180.22709 * 17 16 15 32 32 H 1.08002 * 119.55228 * 180.02562 * 19 18 17 33 33 H 1.08004 * 120.49230 * 180.02562 * 20 19 18 34 34 H 1.09001 * 115.54873 * 148.71878 * 21 9 7 35 35 H 1.09000 * 117.49746 * 359.97438 * 22 21 9 36 36 H 1.09008 * 117.50167 * 145.01934 * 22 21 9 37 37 H 1.09005 * 117.49247 * 252.51021 * 23 22 21 38 38 H 1.08993 * 117.52104 * 107.48262 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0434 -1.2290 -0.3141 9 7 1.3850 -2.3539 0.3966 10 6 0.4637 -2.3320 1.5354 11 6 1.2404 -2.6049 2.8251 12 7 0.3192 -2.5824 3.9640 13 6 0.7832 -2.7998 5.2104 14 8 1.9658 -3.0139 5.3898 15 6 -0.1483 -2.7765 6.3623 16 6 -1.5114 -2.5251 6.1789 17 6 -2.3450 -2.5169 7.2805 18 7 -1.8695 -2.7321 8.4909 19 6 -0.5910 -2.9682 8.7083 20 6 0.3123 -2.9994 7.6634 21 6 1.6421 -3.6091 -0.3136 22 6 2.6719 -3.5827 -1.4447 23 6 1.1818 -3.7041 -1.7696 24 1 -0.4850 0.8369 0.0730 25 1 -0.0128 -1.3537 1.5985 26 1 -0.2984 -3.0995 1.4009 27 1 1.7169 -3.5832 2.7620 28 1 2.0025 -1.8374 2.9596 29 1 -0.6248 -2.4111 3.8209 30 1 -1.9073 -2.3439 5.1905 31 1 -3.4001 -2.3274 7.1486 32 1 -0.2450 -3.1396 9.7169 33 1 1.3583 -3.1939 7.8489 34 1 1.5833 -4.5129 0.2929 35 1 3.1579 -2.6313 -1.6608 36 1 3.2910 -4.4693 -1.5827 37 1 0.8205 -4.6706 -2.1211 38 1 0.6873 -2.8329 -2.1989 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567435557.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:48 Heat of formation + Delta-G solvation = 29.784599 kcal Electronic energy + Delta-G solvation = -20481.365860 eV Core-core repulsion = 17324.643306 eV Total energy + Delta-G solvation = -3156.722555 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.59403 -40.09377 -38.81863 -36.42830 -35.07612 -33.80464 -32.65333 -32.16555 -29.47477 -26.62165 -25.43943 -24.41963 -23.38040 -22.87521 -21.84385 -21.54549 -19.40050 -18.15130 -17.71071 -17.26924 -16.70909 -16.64488 -16.50088 -16.34136 -15.99784 -15.70267 -14.91927 -14.83443 -14.54687 -14.42151 -14.32050 -13.78229 -13.29792 -12.96493 -12.70536 -12.65210 -12.49481 -12.14417 -11.95606 -11.69523 -11.45720 -11.36481 -11.00784 -10.92398 -10.54646 -10.53428 -10.19812 -10.14122 -8.54945 -7.85067 -5.55973 -0.35893 0.09593 1.40436 1.46083 1.54334 1.78988 1.98406 2.46856 2.84793 3.13175 3.37813 3.42549 3.51428 3.63070 3.81726 3.95166 4.06714 4.29621 4.33370 4.36141 4.50781 4.53421 4.59845 4.74233 4.81503 4.82141 4.95112 5.03183 5.06167 5.17128 5.27074 5.40337 5.55949 5.60455 5.63215 5.71423 6.40303 6.46258 6.88763 7.04678 7.12350 7.77236 8.29200 9.05749 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019351 B = 0.004222 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.641478 B = 6629.633067 C = 7255.083645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.024 4.024 3 Si 0.946 3.054 4 H -0.272 1.272 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.266 4.266 8 H 0.055 0.945 9 N -0.565 5.565 10 C 0.149 3.851 11 C 0.118 3.882 12 N -0.701 5.701 13 C 0.549 3.451 14 O -0.578 6.578 15 C -0.100 4.100 16 C -0.137 4.137 17 C 0.097 3.903 18 N -0.489 5.489 19 C 0.097 3.903 20 C -0.127 4.127 21 C 0.099 3.901 22 C -0.184 4.184 23 C -0.210 4.210 24 H 0.253 0.747 25 H 0.076 0.924 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.037 0.963 29 H 0.413 0.587 30 H 0.162 0.838 31 H 0.194 0.806 32 H 0.191 0.809 33 H 0.145 0.855 34 H 0.112 0.888 35 H 0.073 0.927 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.217 -6.732 11.704 14.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.222 4.222 3 Si 0.775 3.225 4 H -0.197 1.197 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.396 4.396 8 H 0.073 0.927 9 N -0.283 5.283 10 C 0.022 3.978 11 C -0.008 4.008 12 N -0.352 5.352 13 C 0.336 3.664 14 O -0.459 6.459 15 C -0.112 4.112 16 C -0.157 4.157 17 C -0.060 4.060 18 N -0.198 5.198 19 C -0.059 4.059 20 C -0.148 4.148 21 C -0.009 4.009 22 C -0.222 4.222 23 C -0.251 4.251 24 H 0.063 0.937 25 H 0.093 0.907 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.250 0.750 30 H 0.179 0.821 31 H 0.211 0.789 32 H 0.208 0.792 33 H 0.163 0.837 34 H 0.129 0.871 35 H 0.092 0.908 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.062 -6.712 12.413 14.992 hybrid contribution 0.801 1.217 -1.160 1.862 sum -4.260 -5.495 11.254 13.228 Atomic orbital electron populations 1.70133 1.06319 1.26522 1.51968 1.25761 0.95684 1.01027 0.99741 0.85555 0.79047 0.80947 0.76984 1.19708 1.21637 1.21404 1.19182 0.93199 0.86178 1.41040 0.92695 1.43357 1.51196 1.03788 1.29908 1.20880 0.91101 1.02181 0.83643 1.21938 0.92966 0.99962 0.85908 1.45833 1.13090 1.70488 1.05823 1.18690 0.87566 0.76534 0.83613 1.90738 1.18390 1.50952 1.85779 1.20392 0.94596 1.02286 0.93883 1.22654 0.92043 0.98196 1.02792 1.23296 1.01858 0.94282 0.86516 1.67647 1.16379 1.10276 1.25536 1.23210 0.87780 0.94602 1.00326 1.22446 1.02683 0.97735 0.91893 1.21551 1.02176 0.90005 0.87171 1.23032 0.92192 1.02260 1.04749 1.23236 0.97080 1.01130 1.03662 0.93711 0.90657 0.93191 0.92927 0.94483 0.74976 0.82057 0.78931 0.79230 0.83717 0.87058 0.90795 0.87261 0.87922 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.38 11.50 21.65 0.25 -49.14 16 2 C -0.02 -1.25 4.98 84.86 0.42 -0.82 16 3 Si 0.95 43.39 29.60 68.60 2.03 45.42 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 5 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 6 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 7 C -0.27 -13.91 8.47 84.03 0.71 -13.20 16 8 H 0.06 2.95 6.75 -2.91 -0.02 2.93 16 9 N -0.56 -26.48 2.75 -678.05 -1.86 -28.34 16 10 C 0.15 6.25 5.45 86.38 0.47 6.72 16 11 C 0.12 4.57 6.00 86.38 0.52 5.09 16 12 N -0.70 -21.87 5.51 -465.68 -2.57 -24.43 16 13 C 0.55 17.86 7.80 86.88 0.68 18.53 16 14 O -0.58 -23.40 16.45 -3.75 -0.06 -23.46 16 15 C -0.10 -2.52 5.91 -19.88 -0.12 -2.63 16 16 C -0.14 -2.58 9.62 22.63 0.22 -2.36 16 17 C 0.10 1.64 11.17 84.68 0.95 2.59 16 18 N -0.49 -9.78 10.33 -196.00 -2.03 -11.80 16 19 C 0.10 1.79 11.17 84.68 0.95 2.74 16 20 C -0.13 -2.85 9.68 22.63 0.22 -2.63 16 21 C 0.10 3.96 6.56 44.99 0.30 4.25 16 22 C -0.18 -6.86 9.80 30.59 0.30 -6.56 16 23 C -0.21 -8.05 10.36 30.59 0.32 -7.73 16 24 H 0.25 13.33 8.32 -92.71 -0.77 12.56 16 25 H 0.08 3.59 5.60 -2.39 -0.01 3.57 16 26 H 0.05 1.91 8.07 -2.39 -0.02 1.89 16 27 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.41 10.29 6.62 -92.71 -0.61 9.68 16 30 H 0.16 2.28 6.54 -2.91 -0.02 2.27 16 31 H 0.19 1.94 8.06 -2.91 -0.02 1.91 16 32 H 0.19 2.22 8.06 -2.91 -0.02 2.20 16 33 H 0.15 3.24 7.74 -2.91 -0.02 3.22 16 34 H 0.11 3.88 8.14 -2.39 -0.02 3.87 16 35 H 0.07 3.12 6.46 -2.39 -0.02 3.10 16 36 H 0.11 3.30 8.14 -2.38 -0.02 3.28 16 37 H 0.10 3.23 8.14 -2.38 -0.02 3.21 16 38 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -66.53 325.50 2.15 -64.38 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.46 Total: 23.38 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 5.92 Total: 3.99 kcal Atomic # 7 Polarization: -107.50 SS G_CDS: -6.21 Total: -113.71 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.06 Total: -23.46 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -66.53 2.15 -64.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567435557.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.164 kcal (2) G-P(sol) polarization free energy of solvation -66.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds