Wall clock time and date at job start Mon Mar 30 2020 02:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99576 * 2 1 4 4 H 1.48493 * 109.47213 * 270.00131 * 3 2 1 5 5 H 1.48507 * 109.47063 * 30.00447 * 3 2 1 6 6 H 1.48501 * 109.46967 * 149.99938 * 3 2 1 7 7 C 1.38807 * 120.00560 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99705 * 0.02562 * 7 2 1 9 9 N 1.36933 * 120.00495 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00587 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47368 * 179.97438 * 10 9 7 12 12 C 1.31005 * 120.00151 * 125.00246 * 11 10 9 13 13 C 1.50704 * 120.00141 * 179.97438 * 12 11 10 14 14 N 1.46503 * 109.47031 * 124.99442 * 13 12 11 15 15 C 1.34773 * 119.99491 * 179.97438 * 14 13 12 16 16 O 1.21775 * 120.00502 * 0.02562 * 15 14 13 17 17 C 1.41521 * 119.99870 * 179.97438 * 15 14 13 18 18 C 1.35617 * 120.00484 * 179.97438 * 17 15 14 19 19 C 1.41667 * 120.00348 * 180.02562 * 18 17 15 20 20 C 1.38278 * 126.26259 * 180.02562 * 19 18 17 21 21 C 1.39784 * 107.08063 * 179.97438 * 20 19 18 22 22 C 1.35496 * 107.91115 * 359.73353 * 21 20 19 23 23 N 1.35758 * 108.91060 * 0.43638 * 22 21 20 24 24 H 0.97001 * 125.69534 * 179.83298 * 23 22 21 25 25 H 0.96993 * 120.00314 * 359.97438 * 1 2 3 26 26 H 0.97009 * 119.99965 * 359.97438 * 9 7 2 27 27 H 1.08997 * 109.47200 * 59.99672 * 10 9 7 28 28 H 1.08999 * 109.46923 * 300.00046 * 10 9 7 29 29 H 1.08000 * 120.00335 * 304.99327 * 11 10 9 30 30 H 1.07995 * 119.99966 * 359.97438 * 12 11 10 31 31 H 1.09004 * 109.46825 * 4.99755 * 13 12 11 32 32 H 1.08998 * 109.46875 * 244.99664 * 13 12 11 33 33 H 0.97000 * 119.99900 * 359.97438 * 14 13 12 34 34 H 1.08004 * 120.00047 * 0.02562 * 17 15 14 35 35 H 1.08004 * 119.99469 * 0.02562 * 18 17 15 36 36 H 1.08004 * 126.45504 * 359.95304 * 20 19 18 37 37 H 1.07999 * 126.04027 * 180.02562 * 21 20 19 38 38 H 1.07993 * 125.54937 * 180.25877 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4474 2.6527 0.7002 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1374 -0.0014 9 7 3.3797 -1.2020 0.0000 10 6 4.1123 -2.4706 -0.0011 11 6 5.5938 -2.1952 -0.0009 12 6 6.3568 -2.7161 0.9280 13 6 7.8385 -2.4410 0.9279 14 7 8.2327 -1.8882 2.2261 15 6 9.5202 -1.5642 2.4575 16 8 10.3559 -1.7306 1.5876 17 6 9.9010 -1.0297 3.7114 18 6 11.1966 -0.7041 3.9446 19 6 11.5778 -0.1695 5.2000 20 6 12.8546 0.2057 5.5755 21 6 12.7745 0.6770 6.8890 22 6 11.4814 0.5907 7.2845 23 7 10.7444 0.0720 6.2692 24 1 9.7894 -0.0963 6.2916 25 1 -0.4850 0.8400 0.0004 26 1 3.8647 -0.3619 0.0004 27 1 3.8493 -3.0413 -0.8918 28 1 3.8486 -3.0432 0.8881 29 1 6.0267 -1.5684 -0.7665 30 1 5.9240 -3.3426 1.6937 31 1 8.0750 -1.7247 0.1410 32 1 8.3804 -3.3697 0.7487 33 1 7.5669 -1.7554 2.9189 34 1 9.1598 -0.8817 4.4829 35 1 11.9379 -0.8524 3.1733 36 1 13.7459 0.1456 4.9684 37 1 13.5969 1.0491 7.4819 38 1 11.0996 0.8838 8.2512 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568841906.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:20 Heat of formation + Delta-G solvation = 56.135773 kcal Electronic energy + Delta-G solvation = -18993.991866 eV Core-core repulsion = 15838.411983 eV Total energy + Delta-G solvation = -3155.579882 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.52294 -39.86653 -36.49314 -34.90512 -34.10285 -32.87105 -31.49988 -31.01901 -29.13716 -27.37768 -24.72989 -23.24647 -21.66310 -21.26529 -20.70526 -20.26513 -19.38274 -18.10109 -17.61760 -17.12495 -16.00231 -15.38770 -14.75362 -14.69624 -14.52438 -14.32530 -14.15068 -13.92062 -13.71784 -13.20648 -12.81190 -12.76017 -12.60254 -12.36956 -12.21584 -12.10851 -11.38044 -10.91155 -10.70730 -10.64718 -10.23536 -10.14651 -9.65005 -9.40710 -9.37093 -9.07207 -8.80925 -8.05562 -7.28909 -5.81442 -3.17816 0.33366 2.12499 2.15913 2.62804 2.78462 3.33549 3.34299 3.37643 3.40107 3.42495 4.55078 4.55890 4.60125 4.73745 4.82779 4.91733 5.01613 5.14018 5.16828 5.47755 5.51171 5.52154 5.61430 5.67020 5.74284 5.85231 5.91895 5.97082 6.27400 6.34876 6.46244 6.46902 6.58166 6.77135 6.99538 7.02526 7.43002 7.93942 8.13155 8.37306 9.15764 9.87931 10.07679 11.36701 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019593 B = 0.002663 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.774627 B =10511.872699 C =11487.251993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.886 3.114 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.091 0.909 9 N -0.753 5.753 10 C 0.177 3.823 11 C -0.116 4.116 12 C -0.196 4.196 13 C 0.154 3.846 14 N -0.723 5.723 15 C 0.551 3.449 16 O -0.555 6.555 17 C -0.247 4.247 18 C 0.029 3.971 19 C 0.001 3.999 20 C -0.141 4.141 21 C -0.209 4.209 22 C 0.016 3.984 23 N -0.544 5.544 24 H 0.418 0.582 25 H 0.260 0.740 26 H 0.362 0.638 27 H 0.040 0.960 28 H 0.033 0.967 29 H 0.109 0.891 30 H 0.116 0.884 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.402 0.598 34 H 0.115 0.885 35 H 0.151 0.849 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.205 -1.253 14.081 28.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.716 3.284 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.377 4.377 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.051 3.949 11 C -0.136 4.136 12 C -0.215 4.215 13 C 0.031 3.969 14 N -0.373 5.373 15 C 0.342 3.658 16 O -0.436 6.436 17 C -0.269 4.269 18 C 0.009 3.991 19 C -0.108 4.108 20 C -0.166 4.166 21 C -0.233 4.233 22 C -0.119 4.119 23 N -0.138 5.138 24 H 0.256 0.744 25 H 0.070 0.930 26 H 0.195 0.805 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.127 0.873 30 H 0.134 0.866 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.237 0.763 34 H 0.133 0.867 35 H 0.168 0.832 36 H 0.163 0.837 37 H 0.159 0.841 38 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 25.359 -1.507 13.434 28.737 hybrid contribution -0.412 1.243 0.456 1.387 sum 24.946 -0.264 13.890 28.554 Atomic orbital electron populations 1.69698 1.05091 1.25920 1.57348 1.24681 0.95265 0.97278 1.01895 0.86529 0.79156 0.84843 0.77883 1.20969 1.21651 1.20358 1.19064 0.80456 0.94844 1.43330 0.89121 1.42649 1.03956 1.02006 1.91263 1.19787 0.86132 0.89740 0.99257 1.23361 0.96650 0.96372 0.97203 1.22756 0.93904 1.03693 1.01170 1.20315 0.92716 0.98781 0.85097 1.45976 1.09170 1.65179 1.16996 1.16927 0.82369 0.78404 0.88110 1.90830 1.50535 1.55155 1.47103 1.21732 0.97305 1.09486 0.98410 1.20849 0.96534 0.88866 0.92864 1.18308 0.90883 1.11772 0.89883 1.21563 0.95540 1.02980 0.96563 1.20913 0.96277 1.09150 0.96952 1.22108 0.92219 1.03647 0.93955 1.42225 1.10538 1.49235 1.11828 0.74444 0.92978 0.80525 0.94256 0.94884 0.87282 0.86570 0.91222 0.90919 0.76344 0.86688 0.83175 0.83713 0.84109 0.81363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.27 13.97 55.49 0.78 -28.49 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 3 Si 0.89 22.10 27.74 -169.99 -4.71 17.38 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 7 C -0.25 -7.02 10.47 -15.06 -0.16 -7.18 16 8 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 9 N -0.75 -17.94 5.40 -61.10 -0.33 -18.27 16 10 C 0.18 3.37 6.70 -5.20 -0.03 3.34 16 11 C -0.12 -1.76 9.24 -36.03 -0.33 -2.09 16 12 C -0.20 -2.50 9.24 -36.03 -0.33 -2.83 16 13 C 0.15 1.88 6.11 -5.19 -0.03 1.84 16 14 N -0.72 -8.14 5.54 -64.43 -0.36 -8.50 16 15 C 0.55 6.87 7.56 -15.01 -0.11 6.76 16 16 O -0.56 -8.87 16.11 5.12 0.08 -8.79 16 17 C -0.25 -2.33 9.39 -39.27 -0.37 -2.70 16 18 C 0.03 0.27 9.40 -39.21 -0.37 -0.10 16 19 C 0.00 0.01 6.74 -83.91 -0.57 -0.55 16 20 C -0.14 -1.12 10.86 -38.99 -0.42 -1.54 16 21 C -0.21 -1.45 10.81 -39.98 -0.43 -1.88 16 22 C 0.02 0.10 11.90 -16.79 -0.20 -0.10 16 23 N -0.54 -3.54 5.94 -10.57 -0.06 -3.61 16 24 H 0.42 1.82 7.87 -40.82 -0.32 1.49 16 25 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 26 H 0.36 8.44 5.52 -40.82 -0.23 8.21 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.03 0.63 7.79 -51.93 -0.40 0.22 16 29 H 0.11 1.59 7.84 -52.49 -0.41 1.18 16 30 H 0.12 1.39 7.84 -52.49 -0.41 0.98 16 31 H 0.07 0.91 7.79 -51.93 -0.40 0.51 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.40 3.70 8.42 -40.82 -0.34 3.35 16 34 H 0.12 0.78 6.93 -52.48 -0.36 0.41 16 35 H 0.15 1.42 7.46 -52.48 -0.39 1.03 16 36 H 0.15 0.92 8.06 -52.48 -0.42 0.50 16 37 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.17 0.49 8.06 -52.49 -0.42 0.07 16 LS Contribution 333.63 15.07 5.03 5.03 Total: -1.00 -35.14 333.63 -8.02 -43.16 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -4.98 Total: 9.09 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -3.46 Total: -7.00 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: 0.03 Total: -58.87 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.08 Total: -8.79 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.71 Total: 17.38 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.14 -8.02 -43.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568841906.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.300 kcal (2) G-P(sol) polarization free energy of solvation -35.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds