Wall clock time and date at job start Mon Mar 30 2020 02:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99576 * 2 1 4 4 H 1.48493 * 109.47213 * 270.00131 * 3 2 1 5 5 H 1.48507 * 109.47063 * 30.00447 * 3 2 1 6 6 H 1.48501 * 109.46967 * 149.99938 * 3 2 1 7 7 C 1.38807 * 120.00560 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99705 * 0.02562 * 7 2 1 9 9 N 1.36933 * 120.00495 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00587 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47368 * 179.97438 * 10 9 7 12 12 C 1.31005 * 120.00151 * 125.00246 * 11 10 9 13 13 C 1.50704 * 120.00141 * 179.97438 * 12 11 10 14 14 N 1.46503 * 109.47031 * 124.99442 * 13 12 11 15 15 C 1.34773 * 119.99491 * 179.97438 * 14 13 12 16 16 O 1.21775 * 120.00502 * 0.02562 * 15 14 13 17 17 C 1.41521 * 119.99870 * 179.97438 * 15 14 13 18 18 C 1.35617 * 120.00484 * 179.97438 * 17 15 14 19 19 C 1.41667 * 120.00348 * 180.02562 * 18 17 15 20 20 C 1.38278 * 126.26259 * 180.02562 * 19 18 17 21 21 C 1.39784 * 107.08063 * 179.97438 * 20 19 18 22 22 C 1.35496 * 107.91115 * 359.73353 * 21 20 19 23 23 N 1.35758 * 108.91060 * 0.43638 * 22 21 20 24 24 H 0.97001 * 125.69534 * 179.83298 * 23 22 21 25 25 H 0.96993 * 120.00314 * 359.97438 * 1 2 3 26 26 H 0.97009 * 119.99965 * 359.97438 * 9 7 2 27 27 H 1.08997 * 109.47200 * 59.99672 * 10 9 7 28 28 H 1.08999 * 109.46923 * 300.00046 * 10 9 7 29 29 H 1.08000 * 120.00335 * 304.99327 * 11 10 9 30 30 H 1.07995 * 119.99966 * 359.97438 * 12 11 10 31 31 H 1.09004 * 109.46825 * 4.99755 * 13 12 11 32 32 H 1.08998 * 109.46875 * 244.99664 * 13 12 11 33 33 H 0.97000 * 119.99900 * 359.97438 * 14 13 12 34 34 H 1.08004 * 120.00047 * 0.02562 * 17 15 14 35 35 H 1.08004 * 119.99469 * 0.02562 * 18 17 15 36 36 H 1.08004 * 126.45504 * 359.95304 * 20 19 18 37 37 H 1.07999 * 126.04027 * 180.02562 * 21 20 19 38 38 H 1.07993 * 125.54937 * 180.25877 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0466 -1.4000 5 1 1.4474 2.6527 0.7002 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1374 -0.0014 9 7 3.3797 -1.2020 0.0000 10 6 4.1123 -2.4706 -0.0011 11 6 5.5938 -2.1952 -0.0009 12 6 6.3568 -2.7161 0.9280 13 6 7.8385 -2.4410 0.9279 14 7 8.2327 -1.8882 2.2261 15 6 9.5202 -1.5642 2.4575 16 8 10.3559 -1.7306 1.5876 17 6 9.9010 -1.0297 3.7114 18 6 11.1966 -0.7041 3.9446 19 6 11.5778 -0.1695 5.2000 20 6 12.8546 0.2057 5.5755 21 6 12.7745 0.6770 6.8890 22 6 11.4814 0.5907 7.2845 23 7 10.7444 0.0720 6.2692 24 1 9.7894 -0.0963 6.2916 25 1 -0.4850 0.8400 0.0004 26 1 3.8647 -0.3619 0.0004 27 1 3.8493 -3.0413 -0.8918 28 1 3.8486 -3.0432 0.8881 29 1 6.0267 -1.5684 -0.7665 30 1 5.9240 -3.3426 1.6937 31 1 8.0750 -1.7247 0.1410 32 1 8.3804 -3.3697 0.7487 33 1 7.5669 -1.7554 2.9189 34 1 9.1598 -0.8817 4.4829 35 1 11.9379 -0.8524 3.1733 36 1 13.7459 0.1456 4.9684 37 1 13.5969 1.0491 7.4819 38 1 11.0996 0.8838 8.2512 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568841906.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:19 Heat of formation + Delta-G solvation = 31.133348 kcal Electronic energy + Delta-G solvation = -18995.076052 eV Core-core repulsion = 15838.411983 eV Total energy + Delta-G solvation = -3156.664069 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.04505 -40.80492 -37.82588 -36.34440 -34.84192 -34.42312 -32.85537 -32.01168 -29.98963 -28.57890 -26.05826 -24.35524 -23.26921 -21.94428 -21.34317 -21.16996 -20.44792 -19.54889 -18.71194 -17.94849 -16.93387 -16.63380 -16.43380 -15.96722 -15.38531 -15.22879 -15.02140 -14.86315 -14.84478 -14.52558 -14.31156 -13.88451 -13.52038 -13.32081 -13.22818 -13.00607 -12.93363 -12.79458 -12.21068 -11.98083 -11.79925 -11.32950 -11.22880 -11.06726 -10.39644 -10.00435 -9.91275 -9.32140 -8.63051 -8.05467 -5.40008 -0.35339 1.02731 1.36925 1.40398 1.47854 1.54576 2.01493 2.33618 2.46283 2.49663 2.54077 3.25942 3.63053 3.87180 3.92862 3.99527 4.09335 4.35964 4.40711 4.42794 4.45847 4.51705 4.64511 4.68854 4.88457 4.94915 4.97582 5.12512 5.32931 5.35637 5.39687 5.62800 5.69120 5.82023 5.92629 6.05212 6.18403 6.56644 6.61480 7.04436 7.23486 7.79588 7.99478 9.15770 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019593 B = 0.002663 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.774627 B =10511.872699 C =11487.251993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.064 4.064 3 Si 0.958 3.042 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.251 1.251 7 C -0.239 4.239 8 H 0.058 0.942 9 N -0.757 5.757 10 C 0.176 3.824 11 C -0.137 4.137 12 C -0.157 4.157 13 C 0.156 3.844 14 N -0.716 5.716 15 C 0.548 3.452 16 O -0.599 6.599 17 C -0.262 4.262 18 C 0.042 3.958 19 C -0.025 4.025 20 C -0.150 4.150 21 C -0.229 4.229 22 C 0.030 3.970 23 N -0.540 5.540 24 H 0.428 0.572 25 H 0.259 0.741 26 H 0.367 0.633 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.116 0.884 30 H 0.130 0.870 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.414 0.586 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.151 0.849 37 H 0.156 0.844 38 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.142 -0.351 16.022 31.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.256 4.256 3 Si 0.785 3.215 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.176 1.176 7 C -0.370 4.370 8 H 0.076 0.924 9 N -0.402 5.402 10 C 0.051 3.949 11 C -0.156 4.156 12 C -0.177 4.177 13 C 0.032 3.968 14 N -0.367 5.367 15 C 0.341 3.659 16 O -0.484 6.484 17 C -0.284 4.284 18 C 0.021 3.979 19 C -0.135 4.135 20 C -0.176 4.176 21 C -0.253 4.253 22 C -0.107 4.107 23 N -0.135 5.135 24 H 0.268 0.732 25 H 0.068 0.932 26 H 0.200 0.800 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.134 0.866 30 H 0.148 0.852 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.251 0.749 34 H 0.161 0.839 35 H 0.157 0.843 36 H 0.169 0.831 37 H 0.174 0.826 38 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 27.308 -0.642 15.388 31.351 hybrid contribution -0.917 0.857 -0.037 1.256 sum 26.391 0.215 15.351 30.531 Atomic orbital electron populations 1.69881 1.07132 1.26836 1.59419 1.25546 0.96180 1.01413 1.02437 0.85366 0.78616 0.79392 0.78134 1.20513 1.22002 1.17593 1.19060 0.82600 0.93642 1.41721 0.92386 1.42672 1.02430 1.04066 1.91075 1.19874 0.88303 0.87731 0.99031 1.23020 0.94360 0.99015 0.99199 1.22815 0.93808 1.01325 0.99712 1.20228 0.92113 0.98910 0.85523 1.45874 1.09255 1.64694 1.16865 1.17354 0.82124 0.77804 0.88614 1.90807 1.51655 1.57264 1.48657 1.21692 0.98039 1.10766 0.97893 1.20831 0.96314 0.87765 0.93005 1.18265 0.91549 1.13449 0.90246 1.21891 0.95844 1.02481 0.97376 1.21244 0.97504 1.09748 0.96789 1.22720 0.91886 1.01382 0.94663 1.42287 1.11079 1.48742 1.11381 0.73241 0.93208 0.79990 0.94733 0.94579 0.86648 0.85219 0.92027 0.90489 0.74938 0.83942 0.84302 0.83110 0.82618 0.78077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.91 13.97 21.65 0.30 -62.61 16 2 C -0.06 -3.79 5.50 84.86 0.47 -3.32 16 3 Si 0.96 45.27 27.74 68.60 1.90 47.18 16 4 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 6 H -0.25 -10.68 6.52 99.48 0.65 -10.03 16 7 C -0.24 -13.71 10.47 84.03 0.88 -12.83 16 8 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 9 N -0.76 -35.27 5.40 -347.21 -1.87 -37.14 16 10 C 0.18 6.50 6.70 85.63 0.57 7.07 16 11 C -0.14 -3.85 9.24 25.64 0.24 -3.62 16 12 C -0.16 -3.60 9.24 25.64 0.24 -3.36 16 13 C 0.16 3.48 6.11 85.63 0.52 4.00 16 14 N -0.72 -14.66 5.54 -475.95 -2.64 -17.30 16 15 C 0.55 13.07 7.56 85.05 0.64 13.72 16 16 O -0.60 -19.09 16.11 -4.59 -0.07 -19.16 16 17 C -0.26 -4.56 9.39 22.47 0.21 -4.35 16 18 C 0.04 0.73 9.40 22.51 0.21 0.94 16 19 C -0.03 -0.39 6.74 39.08 0.26 -0.12 16 20 C -0.15 -2.19 10.86 22.65 0.25 -1.95 16 21 C -0.23 -2.65 10.81 22.01 0.24 -2.42 16 22 C 0.03 0.26 11.90 83.45 0.99 1.25 16 23 N -0.54 -5.63 5.94 -187.34 -1.11 -6.74 16 24 H 0.43 2.45 7.87 -92.71 -0.73 1.72 16 25 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 26 H 0.37 16.29 5.52 -92.70 -0.51 15.78 16 27 H 0.03 1.31 8.14 -2.39 -0.02 1.30 16 28 H 0.04 1.32 7.79 -2.39 -0.02 1.30 16 29 H 0.12 3.14 7.84 -2.91 -0.02 3.11 16 30 H 0.13 2.67 7.84 -2.91 -0.02 2.65 16 31 H 0.06 1.52 7.79 -2.38 -0.02 1.50 16 32 H 0.08 1.71 8.14 -2.39 -0.02 1.70 16 33 H 0.41 6.45 8.42 -92.71 -0.78 5.66 16 34 H 0.14 1.56 6.93 -2.91 -0.02 1.54 16 35 H 0.14 2.68 7.46 -2.91 -0.02 2.66 16 36 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 37 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 38 H 0.20 0.30 8.06 -2.91 -0.02 0.28 16 Total: -1.00 -76.72 333.63 1.24 -75.48 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: -0.99 Total: 25.29 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: 5.72 Total: -4.98 kcal Atomic # 7 Polarization: -118.47 SS G_CDS: -5.32 Total: -123.79 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.07 Total: -19.16 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.90 Total: 47.18 kcal Total: -76.72 1.24 -75.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568841906.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.610 kcal (2) G-P(sol) polarization free energy of solvation -76.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds