Wall clock time and date at job start Mon Mar 30 2020 02:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99886 * 2 1 4 4 H 1.48501 * 109.47068 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47330 * 300.00016 * 3 2 1 6 6 H 1.48507 * 109.47193 * 60.00057 * 3 2 1 7 7 C 1.38804 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99931 * 179.72509 * 7 2 1 9 9 N 1.36935 * 119.99896 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00072 * 179.72139 * 9 7 2 11 11 C 1.50701 * 109.47468 * 179.97438 * 10 9 7 12 12 C 1.30999 * 120.00066 * 124.99856 * 11 10 9 13 13 C 1.50706 * 119.99660 * 180.02562 * 12 11 10 14 14 N 1.46498 * 109.46868 * 125.00654 * 13 12 11 15 15 C 1.34771 * 120.00034 * 179.97438 * 14 13 12 16 16 O 1.21787 * 120.00128 * 359.97438 * 15 14 13 17 17 C 1.41515 * 120.00194 * 179.97438 * 15 14 13 18 18 C 1.35620 * 120.00102 * 186.56746 * 17 15 14 19 19 C 1.41676 * 119.99883 * 8.10697 * 18 17 15 20 20 C 1.38280 * 126.25883 * 217.65157 * 19 18 17 21 21 C 1.39791 * 107.07590 * 179.88920 * 20 19 18 22 22 C 1.35505 * 107.90957 * 0.38209 * 21 20 19 23 23 N 1.35746 * 108.91042 * 359.76055 * 22 21 20 24 24 H 0.96999 * 125.69076 * 179.97438 * 23 22 21 25 25 H 0.97006 * 120.00199 * 0.02562 * 1 2 3 26 26 H 0.97001 * 120.00154 * 359.72168 * 9 7 2 27 27 H 1.08996 * 109.47652 * 300.00346 * 10 9 7 28 28 H 1.09004 * 109.46996 * 60.00199 * 10 9 7 29 29 H 1.08005 * 119.99573 * 305.00864 * 11 10 9 30 30 H 1.07997 * 119.99840 * 0.02562 * 12 11 10 31 31 H 1.09007 * 109.46624 * 245.00253 * 13 12 11 32 32 H 1.08991 * 109.47491 * 5.00027 * 13 12 11 33 33 H 0.97001 * 120.00212 * 359.97438 * 14 13 12 34 34 H 1.08001 * 119.99991 * 6.57797 * 17 15 14 35 35 H 1.08002 * 119.99679 * 188.11288 * 18 17 15 36 36 H 1.07997 * 126.46239 * 0.02607 * 20 19 18 37 37 H 1.08002 * 126.04345 * 180.11871 * 21 20 19 38 38 H 1.07998 * 125.54169 * 179.74640 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 -0.0040 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6567 -0.0051 11 6 1.0787 -4.8022 -0.0032 12 6 1.1438 -5.7211 -0.9346 13 6 0.1641 -6.8662 -0.9330 14 7 -0.5173 -6.9277 -2.2285 15 6 -1.4432 -7.8796 -2.4583 16 8 -1.7132 -8.6890 -1.5894 17 6 -2.1018 -7.9386 -3.7095 18 6 -3.1253 -8.8086 -3.8967 19 6 -3.6485 -9.5338 -2.7978 20 6 -4.0847 -10.8459 -2.8170 21 6 -4.5146 -11.1545 -1.5232 22 6 -4.3470 -10.0515 -0.7542 23 7 -3.8212 -9.0592 -1.5168 24 1 -3.6039 -8.1648 -1.2106 25 1 -0.4851 0.8401 -0.0004 26 1 0.3555 -2.3880 0.0042 27 1 2.6813 -3.7126 -0.8975 28 1 2.6880 -3.7164 0.8824 29 1 0.3232 -4.8654 0.7660 30 1 1.8994 -5.6579 -1.7036 31 1 0.6977 -7.8006 -0.7585 32 1 -0.5709 -6.7145 -0.1427 33 1 -0.3021 -6.2832 -2.9208 34 1 -1.7894 -7.2910 -4.5153 35 1 -3.5414 -8.9485 -4.8835 36 1 -4.0900 -11.5081 -3.6702 37 1 -4.9140 -12.1030 -1.1955 38 1 -4.5920 -9.9744 0.2948 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568841907.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:23 Heat of formation + Delta-G solvation = 77.496033 kcal Electronic energy + Delta-G solvation = -19596.203557 eV Core-core repulsion = 16441.549925 eV Total energy + Delta-G solvation = -3154.653632 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.32429 -39.59152 -36.39763 -34.80517 -33.86009 -32.87660 -30.90183 -30.68437 -28.67334 -27.06423 -24.62071 -23.19816 -21.86946 -21.05150 -20.36744 -20.06034 -19.32025 -18.15654 -17.16043 -16.58855 -15.76064 -15.33951 -14.82450 -14.65900 -14.08550 -13.93585 -13.83683 -13.58681 -13.42967 -13.26392 -12.96258 -12.80034 -12.28967 -12.12445 -12.02188 -11.87695 -11.08529 -10.87731 -10.66737 -10.14276 -10.08473 -10.01895 -9.85417 -9.33309 -9.05606 -8.77991 -8.68244 -7.70314 -6.99969 -5.82970 -3.12668 0.56283 2.24410 2.53925 2.93680 3.29153 3.39272 3.43287 3.45078 3.47286 3.50844 4.55034 4.74284 4.84250 4.94377 5.15630 5.19624 5.25124 5.36486 5.45441 5.50182 5.57010 5.70154 5.82644 5.88429 5.96854 6.08094 6.20913 6.25784 6.32239 6.42620 6.52219 6.84297 6.92198 7.09062 7.10856 7.46112 7.60040 7.64232 8.14410 8.35313 9.46779 10.02635 10.37922 11.39813 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.032911 B = 0.002556 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.583264 B =10949.852672 C =11090.609716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.730 5.730 10 C 0.172 3.828 11 C -0.106 4.106 12 C -0.202 4.202 13 C 0.156 3.844 14 N -0.718 5.718 15 C 0.537 3.463 16 O -0.549 6.549 17 C -0.248 4.248 18 C 0.025 3.975 19 C 0.012 3.988 20 C -0.159 4.159 21 C -0.219 4.219 22 C 0.016 3.984 23 N -0.497 5.497 24 H 0.416 0.584 25 H 0.255 0.745 26 H 0.385 0.615 27 H 0.026 0.974 28 H 0.031 0.969 29 H 0.108 0.892 30 H 0.115 0.885 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.403 0.597 34 H 0.133 0.867 35 H 0.143 0.857 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.149 -20.240 -7.057 22.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.374 5.374 10 C 0.045 3.955 11 C -0.126 4.126 12 C -0.221 4.221 13 C 0.033 3.967 14 N -0.369 5.369 15 C 0.328 3.672 16 O -0.431 6.431 17 C -0.270 4.270 18 C 0.005 3.995 19 C -0.100 4.100 20 C -0.184 4.184 21 C -0.243 4.243 22 C -0.122 4.122 23 N -0.089 5.089 24 H 0.255 0.745 25 H 0.065 0.935 26 H 0.218 0.782 27 H 0.044 0.956 28 H 0.049 0.951 29 H 0.126 0.874 30 H 0.132 0.868 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.238 0.762 34 H 0.151 0.849 35 H 0.161 0.839 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -7.114 -20.488 -6.369 22.604 hybrid contribution 0.541 1.694 -0.176 1.787 sum -6.572 -18.794 -6.545 20.958 Atomic orbital electron populations 1.69678 1.05156 1.25658 1.57620 1.24772 0.95577 0.97807 1.02847 0.86085 0.78778 0.83886 0.77242 1.20489 1.21787 1.21771 1.19291 0.91123 0.83990 1.42890 0.90993 1.42305 1.05935 0.99584 1.89597 1.19828 0.92617 0.84566 0.98468 1.23326 0.98250 0.94044 0.96974 1.22703 1.01028 0.97043 1.01365 1.20279 0.93757 0.97574 0.85062 1.46101 1.41011 1.32571 1.17178 1.17302 0.80323 0.81116 0.88492 1.90909 1.65117 1.39916 1.47139 1.22073 1.00853 1.05200 0.98851 1.20823 0.91742 0.90008 0.96971 1.17981 1.10745 0.95831 0.85472 1.21276 1.04676 0.94246 0.98218 1.20691 1.10635 0.98789 0.94201 1.21934 1.04198 0.88959 0.97135 1.42291 1.45392 1.13339 1.07923 0.74464 0.93484 0.78171 0.95647 0.95119 0.87354 0.86757 0.91165 0.91443 0.76194 0.84918 0.83928 0.84721 0.84970 0.82291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.09 13.06 55.49 0.72 -27.36 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.47 5.59 -61.09 -0.34 -18.82 16 10 C 0.17 3.42 6.70 -5.19 -0.03 3.38 16 11 C -0.11 -1.70 9.24 -36.03 -0.33 -2.03 16 12 C -0.20 -2.70 9.24 -36.02 -0.33 -3.04 16 13 C 0.16 1.93 6.11 -5.19 -0.03 1.90 16 14 N -0.72 -8.10 5.54 -64.44 -0.36 -8.46 16 15 C 0.54 6.48 7.02 -15.01 -0.11 6.37 16 16 O -0.55 -8.09 11.61 5.11 0.06 -8.03 16 17 C -0.25 -2.34 9.85 -39.27 -0.39 -2.73 16 18 C 0.03 0.23 9.96 -39.21 -0.39 -0.16 16 19 C 0.01 0.14 5.37 -83.90 -0.45 -0.31 16 20 C -0.16 -1.76 10.86 -38.99 -0.42 -2.19 16 21 C -0.22 -2.40 10.81 -39.98 -0.43 -2.83 16 22 C 0.02 0.17 11.90 -16.80 -0.20 -0.03 16 23 N -0.50 -5.84 3.91 -10.56 -0.04 -5.88 16 24 H 0.42 4.80 7.30 -40.82 -0.30 4.50 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.38 10.23 7.66 -40.82 -0.31 9.92 16 27 H 0.03 0.50 7.79 -51.93 -0.40 0.10 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.11 1.70 7.84 -52.48 -0.41 1.28 16 30 H 0.11 1.46 7.84 -52.49 -0.41 1.05 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.88 7.79 -51.93 -0.40 0.47 16 33 H 0.40 3.90 8.42 -40.82 -0.34 3.56 16 34 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 37 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 330.48 15.07 4.98 4.98 Total: -1.00 -33.17 330.48 -8.46 -41.63 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -5.09 Total: 13.80 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -3.37 Total: -9.06 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: -0.02 Total: -60.51 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: 0.06 Total: -8.03 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.17 -8.46 -41.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568841907.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.127 kcal (2) G-P(sol) polarization free energy of solvation -33.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds