Wall clock time and date at job start Mon Mar 30 2020 02:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99835 * 2 1 4 4 H 1.48502 * 109.47371 * 269.99878 * 3 2 1 5 5 H 1.48497 * 109.47310 * 30.00048 * 3 2 1 6 6 H 1.48506 * 109.46844 * 149.99990 * 3 2 1 7 7 C 1.38809 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00060 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99756 * 180.02562 * 7 2 1 10 10 C 1.46501 * 119.99810 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47127 * 179.97438 * 10 9 7 12 12 C 1.30999 * 120.00419 * 127.00680 * 11 10 9 13 13 C 1.50706 * 119.99296 * 7.56357 * 12 11 10 14 14 N 1.46497 * 109.46848 * 127.15595 * 13 12 11 15 15 C 1.34782 * 120.00020 * 179.97438 * 14 13 12 16 16 O 1.21779 * 119.99589 * 0.02562 * 15 14 13 17 17 C 1.41510 * 120.00339 * 179.97438 * 15 14 13 18 18 C 1.35613 * 120.00444 * 179.97438 * 17 15 14 19 19 C 1.41671 * 120.00529 * 180.02562 * 18 17 15 20 20 C 1.38279 * 126.26107 * 180.02562 * 19 18 17 21 21 C 1.39793 * 107.07667 * 179.97438 * 20 19 18 22 22 C 1.35503 * 107.90969 * 359.74182 * 21 20 19 23 23 N 1.35756 * 108.90890 * 0.42669 * 22 21 20 24 24 H 0.96999 * 125.68412 * 179.83365 * 23 22 21 25 25 H 0.97002 * 119.99909 * 0.02562 * 1 2 3 26 26 H 0.96997 * 120.00030 * 359.97438 * 9 7 2 27 27 H 1.09001 * 109.46962 * 60.00658 * 10 9 7 28 28 H 1.08994 * 109.47304 * 300.00234 * 10 9 7 29 29 H 1.08002 * 120.00223 * 307.00849 * 11 10 9 30 30 H 1.07993 * 120.00282 * 187.55999 * 12 11 10 31 31 H 1.08996 * 109.47464 * 7.15688 * 13 12 11 32 32 H 1.08995 * 109.46773 * 247.15163 * 13 12 11 33 33 H 0.97000 * 120.00835 * 359.97438 * 14 13 12 34 34 H 1.08002 * 119.99895 * 0.02562 * 17 15 14 35 35 H 1.08002 * 119.99661 * 0.02562 * 18 17 15 36 36 H 1.07999 * 126.46567 * 359.93312 * 20 19 18 37 37 H 1.07998 * 126.03951 * 179.97438 * 21 20 19 38 38 H 1.07994 * 125.54452 * 180.25970 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.5937 -2.1955 0.0000 12 6 6.3625 -2.7472 0.9059 13 6 5.7993 -3.7869 1.8402 14 7 6.6366 -4.9882 1.7958 15 6 6.3236 -6.0564 2.5558 16 8 5.3443 -6.0231 3.2789 17 6 7.1321 -7.2169 2.5125 18 6 6.8174 -8.2915 3.2775 19 6 7.6272 -9.4532 3.2347 20 6 7.4276 -10.6164 3.9554 21 6 8.4567 -11.4963 3.6079 22 6 9.2465 -10.8755 2.6985 23 7 8.7566 -9.6307 2.4673 24 1 9.1365 -8.9770 1.8597 25 1 -0.4850 0.8401 -0.0004 26 1 3.8646 -0.3621 0.0004 27 1 3.8492 -3.0422 -0.8903 28 1 3.8484 -3.0426 0.8897 29 1 6.0218 -1.5433 -0.7469 30 1 7.3999 -2.4569 0.9832 31 1 4.7845 -4.0399 1.5330 32 1 5.7837 -3.3922 2.8560 33 1 7.4164 -5.0149 1.2195 34 1 8.0003 -7.2466 1.8708 35 1 5.9494 -8.2617 3.9195 36 1 6.6279 -10.8085 4.6553 37 1 8.5953 -12.4957 3.9930 38 1 10.1245 -11.3007 2.2353 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568841908.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:27 Heat of formation + Delta-G solvation = 65.784040 kcal Electronic energy + Delta-G solvation = -19147.869749 eV Core-core repulsion = 15992.708247 eV Total energy + Delta-G solvation = -3155.161502 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.50645 -39.78912 -36.75360 -34.65464 -34.04638 -32.83569 -31.48919 -30.87209 -29.05012 -26.83327 -25.21766 -23.43072 -22.05871 -21.26564 -20.67628 -20.02147 -18.85017 -18.05997 -17.50685 -16.62216 -16.24342 -15.50884 -14.85564 -14.60083 -14.46166 -14.29648 -14.16443 -13.75288 -13.72619 -13.09216 -12.79187 -12.74351 -12.59016 -12.49035 -12.31809 -11.95963 -11.21931 -10.85829 -10.61044 -10.52159 -10.12366 -10.05621 -9.59139 -9.39007 -9.25361 -9.05352 -8.66083 -8.02730 -7.21682 -5.75707 -3.11981 0.38046 2.14517 2.16176 2.66636 2.78734 3.38395 3.40914 3.41685 3.45554 3.47351 4.58284 4.59965 4.63680 4.74210 4.91639 4.93840 5.03843 5.18155 5.23655 5.52750 5.54375 5.58270 5.64276 5.70945 5.81849 5.92784 5.97878 6.12597 6.29287 6.45057 6.48983 6.51428 6.59824 6.76905 7.02864 7.03374 7.51673 8.00031 8.24541 8.42836 9.21240 9.93117 10.12712 11.42459 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.043237 B = 0.002366 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.436014 B =11830.020980 C =12192.143108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.091 0.909 9 N -0.751 5.751 10 C 0.166 3.834 11 C -0.119 4.119 12 C -0.193 4.193 13 C 0.138 3.862 14 N -0.722 5.722 15 C 0.547 3.453 16 O -0.547 6.547 17 C -0.244 4.244 18 C 0.027 3.973 19 C 0.004 3.996 20 C -0.141 4.141 21 C -0.208 4.208 22 C 0.013 3.987 23 N -0.545 5.545 24 H 0.417 0.583 25 H 0.260 0.740 26 H 0.362 0.638 27 H 0.037 0.963 28 H 0.044 0.956 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.397 0.603 34 H 0.113 0.887 35 H 0.152 0.848 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.974 -20.386 4.265 31.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.192 4.192 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.109 0.891 9 N -0.397 5.397 10 C 0.040 3.960 11 C -0.139 4.139 12 C -0.212 4.212 13 C 0.016 3.984 14 N -0.373 5.373 15 C 0.338 3.662 16 O -0.427 6.427 17 C -0.267 4.267 18 C 0.007 3.993 19 C -0.106 4.106 20 C -0.167 4.167 21 C -0.232 4.232 22 C -0.122 4.122 23 N -0.139 5.139 24 H 0.254 0.746 25 H 0.070 0.930 26 H 0.194 0.806 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.231 0.769 34 H 0.131 0.869 35 H 0.169 0.831 36 H 0.163 0.837 37 H 0.159 0.841 38 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 23.064 -20.297 4.681 31.078 hybrid contribution 1.327 1.619 -0.716 2.212 sum 24.391 -18.678 3.965 30.976 Atomic orbital electron populations 1.69708 1.05076 1.25854 1.57396 1.24685 0.95276 0.97261 1.01955 0.86518 0.79242 0.84888 0.77728 1.21067 1.21653 1.20308 1.19074 0.80412 0.94884 1.43175 0.89092 1.42618 1.03957 1.01881 1.91212 1.19978 0.86490 0.89962 0.99606 1.23310 0.96826 0.97766 0.95969 1.22645 1.00129 1.00428 0.98032 1.20563 0.95152 0.83177 0.99494 1.45928 1.30838 1.15151 1.45378 1.16926 0.85320 0.83548 0.80406 1.90873 1.28373 1.83022 1.40457 1.21714 1.03238 0.95677 1.06025 1.20876 0.95788 0.88687 0.93986 1.18317 0.92688 0.97617 1.01986 1.21582 1.00727 0.92574 1.01774 1.20918 0.98184 1.01136 1.02982 1.22079 1.01716 0.85677 1.02710 1.42197 1.22315 1.14219 1.35189 0.74582 0.93015 0.80563 0.94559 0.93827 0.86954 0.87052 0.89144 0.90980 0.76918 0.86868 0.83064 0.83659 0.84133 0.81441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.84 13.97 55.49 0.78 -29.06 16 2 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 3 Si 0.89 22.44 27.74 -169.99 -4.71 17.72 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 6 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 7 C -0.25 -7.16 10.47 -15.06 -0.16 -7.32 16 8 H 0.09 2.83 8.06 -52.48 -0.42 2.41 16 9 N -0.75 -18.37 5.40 -61.09 -0.33 -18.70 16 10 C 0.17 3.28 6.35 -5.19 -0.03 3.25 16 11 C -0.12 -1.81 9.63 -36.03 -0.35 -2.16 16 12 C -0.19 -2.48 9.63 -36.02 -0.35 -2.82 16 13 C 0.14 1.95 5.76 -5.19 -0.03 1.92 16 14 N -0.72 -8.30 5.54 -64.44 -0.36 -8.66 16 15 C 0.55 7.20 7.56 -15.01 -0.11 7.08 16 16 O -0.55 -9.63 16.11 5.12 0.08 -9.55 16 17 C -0.24 -2.31 9.39 -39.27 -0.37 -2.68 16 18 C 0.03 0.26 9.40 -39.21 -0.37 -0.11 16 19 C 0.00 0.03 6.74 -83.91 -0.57 -0.53 16 20 C -0.14 -1.14 10.86 -38.99 -0.42 -1.57 16 21 C -0.21 -1.42 10.81 -39.98 -0.43 -1.85 16 22 C 0.01 0.07 11.90 -16.79 -0.20 -0.13 16 23 N -0.54 -3.32 5.94 -10.56 -0.06 -3.38 16 24 H 0.42 1.50 7.87 -40.82 -0.32 1.18 16 25 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 26 H 0.36 8.56 5.52 -40.82 -0.23 8.34 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.04 0.89 5.30 -51.93 -0.28 0.62 16 29 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 30 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.09 1.50 5.30 -51.93 -0.28 1.22 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.40 3.23 8.42 -40.82 -0.34 2.88 16 34 H 0.11 0.69 6.93 -52.49 -0.36 0.33 16 35 H 0.15 1.54 7.46 -52.49 -0.39 1.15 16 36 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.17 0.40 8.06 -52.49 -0.42 -0.02 16 LS Contribution 329.15 15.07 4.96 4.96 Total: -1.00 -36.31 329.15 -7.87 -44.19 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -4.75 Total: 9.37 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -3.48 Total: -6.90 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: 0.03 Total: -59.80 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.08 Total: -9.55 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.71 Total: 17.72 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -36.31 -7.87 -44.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568841908.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.971 kcal (2) G-P(sol) polarization free energy of solvation -36.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds