Wall clock time and date at job start Mon Mar 30 2020 02:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99835 * 2 1 4 4 H 1.48502 * 109.47371 * 269.99878 * 3 2 1 5 5 H 1.48497 * 109.47310 * 30.00048 * 3 2 1 6 6 H 1.48506 * 109.46844 * 149.99990 * 3 2 1 7 7 C 1.38809 * 119.99835 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00060 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99756 * 180.02562 * 7 2 1 10 10 C 1.46501 * 119.99810 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47127 * 179.97438 * 10 9 7 12 12 C 1.30999 * 120.00419 * 127.00680 * 11 10 9 13 13 C 1.50706 * 119.99296 * 7.56357 * 12 11 10 14 14 N 1.46497 * 109.46848 * 127.15595 * 13 12 11 15 15 C 1.34782 * 120.00020 * 179.97438 * 14 13 12 16 16 O 1.21779 * 119.99589 * 0.02562 * 15 14 13 17 17 C 1.41510 * 120.00339 * 179.97438 * 15 14 13 18 18 C 1.35613 * 120.00444 * 179.97438 * 17 15 14 19 19 C 1.41671 * 120.00529 * 180.02562 * 18 17 15 20 20 C 1.38279 * 126.26107 * 180.02562 * 19 18 17 21 21 C 1.39793 * 107.07667 * 179.97438 * 20 19 18 22 22 C 1.35503 * 107.90969 * 359.74182 * 21 20 19 23 23 N 1.35756 * 108.90890 * 0.42669 * 22 21 20 24 24 H 0.96999 * 125.68412 * 179.83365 * 23 22 21 25 25 H 0.97002 * 119.99909 * 0.02562 * 1 2 3 26 26 H 0.96997 * 120.00030 * 359.97438 * 9 7 2 27 27 H 1.09001 * 109.46962 * 60.00658 * 10 9 7 28 28 H 1.08994 * 109.47304 * 300.00234 * 10 9 7 29 29 H 1.08002 * 120.00223 * 307.00849 * 11 10 9 30 30 H 1.07993 * 120.00282 * 187.55999 * 12 11 10 31 31 H 1.08996 * 109.47464 * 7.15688 * 13 12 11 32 32 H 1.08995 * 109.46773 * 247.15163 * 13 12 11 33 33 H 0.97000 * 120.00835 * 359.97438 * 14 13 12 34 34 H 1.08002 * 119.99895 * 0.02562 * 17 15 14 35 35 H 1.08002 * 119.99661 * 0.02562 * 18 17 15 36 36 H 1.07999 * 126.46567 * 359.93312 * 20 19 18 37 37 H 1.07998 * 126.03951 * 179.97438 * 21 20 19 38 38 H 1.07994 * 125.54452 * 180.25970 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0000 11 6 5.5937 -2.1955 0.0000 12 6 6.3625 -2.7472 0.9059 13 6 5.7993 -3.7869 1.8402 14 7 6.6366 -4.9882 1.7958 15 6 6.3236 -6.0564 2.5558 16 8 5.3443 -6.0231 3.2789 17 6 7.1321 -7.2169 2.5125 18 6 6.8174 -8.2915 3.2775 19 6 7.6272 -9.4532 3.2347 20 6 7.4276 -10.6164 3.9554 21 6 8.4567 -11.4963 3.6079 22 6 9.2465 -10.8755 2.6985 23 7 8.7566 -9.6307 2.4673 24 1 9.1365 -8.9770 1.8597 25 1 -0.4850 0.8401 -0.0004 26 1 3.8646 -0.3621 0.0004 27 1 3.8492 -3.0422 -0.8903 28 1 3.8484 -3.0426 0.8897 29 1 6.0218 -1.5433 -0.7469 30 1 7.3999 -2.4569 0.9832 31 1 4.7845 -4.0399 1.5330 32 1 5.7837 -3.3922 2.8560 33 1 7.4164 -5.0149 1.2195 34 1 8.0003 -7.2466 1.8708 35 1 5.9494 -8.2617 3.9195 36 1 6.6279 -10.8085 4.6553 37 1 8.5953 -12.4957 3.9930 38 1 10.1245 -11.3007 2.2353 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568841908.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:26 Heat of formation + Delta-G solvation = 38.704523 kcal Electronic energy + Delta-G solvation = -19149.044005 eV Core-core repulsion = 15992.708247 eV Total energy + Delta-G solvation = -3156.335758 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.03501 -40.82623 -38.12372 -36.21596 -34.84501 -34.41033 -32.82056 -32.00450 -29.83292 -28.17022 -26.61917 -24.25503 -24.05518 -21.93063 -21.26199 -20.95926 -20.33559 -19.09965 -18.72237 -17.66904 -17.42222 -16.69104 -16.40151 -15.90435 -15.48766 -15.21888 -15.05790 -14.83683 -14.82474 -14.51869 -14.30762 -14.16390 -13.49320 -13.31730 -13.22117 -13.06604 -12.91352 -12.74766 -12.21806 -11.89171 -11.66925 -11.32413 -11.18602 -11.06459 -10.36473 -9.97799 -9.89817 -9.29080 -8.61576 -8.06041 -5.41337 -0.34483 1.02113 1.36377 1.41555 1.49208 1.55738 2.02590 2.34661 2.46541 2.48902 2.55102 3.24637 3.73096 3.83308 3.93299 4.00045 4.09836 4.30706 4.37492 4.43204 4.44013 4.52422 4.58891 4.81831 4.87663 4.94828 5.04135 5.15783 5.34565 5.37824 5.41283 5.53425 5.68763 5.84834 5.93063 6.05602 6.17483 6.61262 6.64866 7.03612 7.28985 7.77498 7.99541 9.15418 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.043237 B = 0.002366 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.436014 B =11830.020980 C =12192.143108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.067 4.067 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.294 1.294 6 H -0.250 1.250 7 C -0.244 4.244 8 H 0.051 0.949 9 N -0.753 5.753 10 C 0.161 3.839 11 C -0.139 4.139 12 C -0.153 4.153 13 C 0.136 3.864 14 N -0.707 5.707 15 C 0.542 3.458 16 O -0.605 6.605 17 C -0.255 4.255 18 C 0.037 3.963 19 C -0.023 4.023 20 C -0.154 4.154 21 C -0.231 4.231 22 C 0.033 3.967 23 N -0.537 5.537 24 H 0.429 0.571 25 H 0.260 0.740 26 H 0.369 0.631 27 H 0.028 0.972 28 H 0.032 0.968 29 H 0.137 0.863 30 H 0.156 0.844 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.418 0.582 34 H 0.152 0.848 35 H 0.132 0.868 36 H 0.147 0.853 37 H 0.155 0.845 38 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.563 -20.435 3.555 35.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.259 4.259 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.221 1.221 6 H -0.174 1.174 7 C -0.374 4.374 8 H 0.069 0.931 9 N -0.399 5.399 10 C 0.036 3.964 11 C -0.158 4.158 12 C -0.172 4.172 13 C 0.012 3.988 14 N -0.358 5.358 15 C 0.335 3.665 16 O -0.489 6.489 17 C -0.277 4.277 18 C 0.016 3.984 19 C -0.133 4.133 20 C -0.179 4.179 21 C -0.254 4.254 22 C -0.103 4.103 23 N -0.132 5.132 24 H 0.269 0.731 25 H 0.068 0.932 26 H 0.203 0.797 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.154 0.846 30 H 0.173 0.827 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.255 0.745 34 H 0.170 0.830 35 H 0.150 0.850 36 H 0.164 0.836 37 H 0.173 0.827 38 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 27.739 -20.359 3.932 34.632 hybrid contribution -0.082 1.340 -0.423 1.407 sum 27.657 -19.019 3.509 33.748 Atomic orbital electron populations 1.69909 1.07288 1.26942 1.59217 1.25642 0.96298 1.01759 1.02155 0.85275 0.78582 0.78728 0.78378 1.19828 1.22084 1.17399 1.19034 0.82723 0.93528 1.42159 0.93110 1.42590 1.02330 1.03956 1.91020 1.20059 0.89806 0.87905 0.98624 1.23067 0.93702 1.00510 0.98503 1.22839 1.01566 0.97704 0.95098 1.20389 0.94424 0.84671 0.99272 1.45705 1.30956 1.13908 1.45258 1.17530 0.84860 0.84620 0.79508 1.90847 1.31025 1.84052 1.43026 1.21659 1.04322 0.94019 1.07650 1.20817 0.95153 0.89345 0.93073 1.18176 0.94051 0.97337 1.03727 1.21888 1.01263 0.93075 1.01699 1.21242 0.98273 1.01960 1.03925 1.22729 1.01693 0.84848 1.01023 1.42229 1.21419 1.14804 1.34758 0.73057 0.93163 0.79718 0.95374 0.94997 0.84572 0.82670 0.92392 0.92056 0.74473 0.83036 0.85002 0.83552 0.82691 0.77724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.98 13.97 21.65 0.30 -64.68 16 2 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 3 Si 0.96 46.25 27.74 68.60 1.90 48.15 16 4 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.25 -10.74 6.52 99.48 0.65 -10.09 16 7 C -0.24 -14.64 10.47 84.03 0.88 -13.76 16 8 H 0.05 3.37 8.06 -2.91 -0.02 3.35 16 9 N -0.75 -36.75 5.40 -347.18 -1.87 -38.62 16 10 C 0.16 6.42 6.35 85.63 0.54 6.97 16 11 C -0.14 -3.87 9.63 25.65 0.25 -3.62 16 12 C -0.15 -3.43 9.63 25.65 0.25 -3.19 16 13 C 0.14 3.74 5.76 85.64 0.49 4.23 16 14 N -0.71 -15.27 5.54 -475.97 -2.64 -17.90 16 15 C 0.54 14.29 7.56 85.05 0.64 14.93 16 16 O -0.61 -22.50 16.11 -4.60 -0.07 -22.57 16 17 C -0.25 -4.56 9.39 22.47 0.21 -4.35 16 18 C 0.04 0.70 9.40 22.51 0.21 0.92 16 19 C -0.02 -0.36 6.74 39.08 0.26 -0.10 16 20 C -0.15 -2.38 10.86 22.66 0.25 -2.13 16 21 C -0.23 -2.67 10.81 22.01 0.24 -2.43 16 22 C 0.03 0.26 11.90 83.45 0.99 1.25 16 23 N -0.54 -5.02 5.94 -187.34 -1.11 -6.14 16 24 H 0.43 1.58 7.87 -92.71 -0.73 0.85 16 25 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16 26 H 0.37 16.75 5.52 -92.71 -0.51 16.23 16 27 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.03 1.37 5.30 -2.39 -0.01 1.35 16 29 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 30 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 31 H 0.06 2.00 5.30 -2.39 -0.01 1.99 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.42 5.47 8.42 -92.71 -0.78 4.69 16 34 H 0.15 1.40 6.93 -2.91 -0.02 1.38 16 35 H 0.13 2.95 7.46 -2.91 -0.02 2.93 16 36 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 37 H 0.16 1.24 8.06 -2.91 -0.02 1.21 16 38 H 0.21 -0.03 8.06 -2.91 -0.02 -0.06 16 Total: -1.00 -83.50 329.15 1.21 -82.29 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: -0.98 Total: 24.39 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: 5.68 Total: -4.91 kcal Atomic # 7 Polarization: -122.02 SS G_CDS: -5.32 Total: -127.34 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.07 Total: -22.57 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 1.90 Total: 48.15 kcal Total: -83.50 1.21 -82.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568841908.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.993 kcal (2) G-P(sol) polarization free energy of solvation -83.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds