Wall clock time and date at job start Mon Mar 30 2020 02:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00433 * 2 1 4 4 H 1.48500 * 109.46991 * 270.00143 * 3 2 1 5 5 H 1.48502 * 109.47024 * 29.99831 * 3 2 1 6 6 H 1.48498 * 109.47510 * 149.99808 * 3 2 1 7 7 C 1.38814 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99981 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99875 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99943 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47112 * 180.02562 * 10 9 7 12 12 C 1.31002 * 120.00130 * 124.90648 * 11 10 9 13 13 C 1.50696 * 119.99778 * 7.79051 * 12 11 10 14 14 N 1.46503 * 109.47289 * 125.33143 * 13 12 11 15 15 C 1.34770 * 120.00006 * 180.02562 * 14 13 12 16 16 O 1.21778 * 120.00608 * 359.97438 * 15 14 13 17 17 C 1.41525 * 119.99859 * 180.02562 * 15 14 13 18 18 C 1.35614 * 119.99954 * 186.93917 * 17 15 14 19 19 C 1.41672 * 119.99937 * 6.02595 * 18 17 15 20 20 C 1.38290 * 126.25969 * 219.73305 * 19 18 17 21 21 C 1.39784 * 107.07850 * 179.88666 * 20 19 18 22 22 C 1.35507 * 107.90875 * 0.37860 * 21 20 19 23 23 N 1.35752 * 108.90946 * 359.76760 * 22 21 20 24 24 H 0.97002 * 125.68816 * 179.97438 * 23 22 21 25 25 H 0.97002 * 119.99752 * 0.02562 * 1 2 3 26 26 H 0.97005 * 120.00124 * 0.02562 * 9 7 2 27 27 H 1.08991 * 109.47258 * 60.00397 * 10 9 7 28 28 H 1.09005 * 109.47160 * 299.99521 * 10 9 7 29 29 H 1.08003 * 119.99966 * 304.91081 * 11 10 9 30 30 H 1.08000 * 119.99751 * 187.50991 * 12 11 10 31 31 H 1.09003 * 109.47057 * 245.32499 * 13 12 11 32 32 H 1.08998 * 109.47116 * 5.32723 * 13 12 11 33 33 H 0.97002 * 119.99710 * 359.97438 * 14 13 12 34 34 H 1.07997 * 119.99857 * 6.93348 * 17 15 14 35 35 H 1.07996 * 119.99832 * 186.03247 * 18 17 15 36 36 H 1.08000 * 126.45489 * 0.02562 * 20 19 18 37 37 H 1.07995 * 126.04436 * 180.11891 * 21 20 19 38 38 H 1.07998 * 125.54109 * 179.73965 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0787 -4.8022 -0.0012 12 6 1.1468 -5.7218 -0.9317 13 6 2.3053 -5.7341 -1.8954 14 7 2.9507 -7.0490 -1.8664 15 6 4.0178 -7.2934 -2.6525 16 8 4.4453 -6.4215 -3.3872 17 6 4.6408 -8.5638 -2.6248 18 6 5.7953 -8.7678 -3.3066 19 6 6.4452 -7.6802 -3.9405 20 6 7.0632 -7.7050 -5.1774 21 6 7.5666 -6.4220 -5.4105 22 6 7.2639 -5.6539 -4.3360 23 7 6.5824 -6.4068 -3.4351 24 1 6.2480 -6.0990 -2.5781 25 1 -0.4850 0.8401 -0.0004 26 1 0.3555 -2.3880 -0.0005 27 1 2.6846 -3.7146 0.8894 28 1 2.6846 -3.7146 -0.8906 29 1 0.3206 -4.8650 0.7655 30 1 0.3750 -6.4737 -1.0054 31 1 1.9423 -5.5298 -2.9027 32 1 3.0261 -4.9691 -1.6068 33 1 2.6104 -7.7435 -1.2809 34 1 4.1970 -9.3708 -2.0608 35 1 6.2191 -9.7593 -3.3663 36 1 7.1402 -8.5549 -5.8393 37 1 8.1056 -6.1009 -6.2896 38 1 7.5231 -4.6125 -4.2157 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568841909.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:30 Heat of formation + Delta-G solvation = 87.173969 kcal Electronic energy + Delta-G solvation = -20032.986402 eV Core-core repulsion = 16878.752437 eV Total energy + Delta-G solvation = -3154.233965 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.24953 -39.54271 -36.67785 -34.58228 -33.82066 -32.85834 -30.81564 -30.50555 -28.57941 -26.60817 -25.05875 -23.19552 -22.52247 -20.98736 -20.29158 -19.82475 -18.82371 -17.87457 -16.89360 -16.67115 -15.92324 -15.35745 -14.72731 -14.59083 -14.34217 -13.84389 -13.75771 -13.50853 -13.36101 -13.22851 -12.90709 -12.68579 -12.37729 -12.20231 -12.00235 -11.74742 -10.99320 -10.83153 -10.46752 -10.09138 -10.05777 -9.95179 -9.81042 -9.21105 -9.05917 -8.68626 -8.57467 -7.63990 -6.95500 -5.79928 -3.09415 0.61496 2.23750 2.60515 3.01527 3.33704 3.42591 3.47086 3.48766 3.49741 3.57321 4.58717 4.76498 4.86020 5.01050 5.24428 5.27287 5.27919 5.43907 5.52484 5.53012 5.65043 5.81965 5.86575 5.89088 5.98839 6.21669 6.27498 6.31598 6.35204 6.49155 6.54427 6.83788 6.99914 7.10781 7.18967 7.51406 7.66343 7.68416 8.22075 8.38377 9.49776 10.05423 10.40775 11.42832 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018647 B = 0.003547 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.184900 B = 7892.521849 C = 9184.322568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.727 5.727 10 C 0.162 3.838 11 C -0.110 4.110 12 C -0.198 4.198 13 C 0.140 3.860 14 N -0.719 5.719 15 C 0.533 3.467 16 O -0.542 6.542 17 C -0.246 4.246 18 C 0.025 3.975 19 C 0.009 3.991 20 C -0.159 4.159 21 C -0.220 4.220 22 C 0.019 3.981 23 N -0.496 5.496 24 H 0.416 0.584 25 H 0.256 0.744 26 H 0.385 0.615 27 H 0.027 0.973 28 H 0.035 0.965 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.398 0.602 34 H 0.131 0.869 35 H 0.142 0.858 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.844 -20.831 -5.023 24.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.372 5.372 10 C 0.036 3.964 11 C -0.130 4.130 12 C -0.218 4.218 13 C 0.018 3.982 14 N -0.369 5.369 15 C 0.324 3.676 16 O -0.423 6.423 17 C -0.268 4.268 18 C 0.004 3.996 19 C -0.103 4.103 20 C -0.185 4.185 21 C -0.244 4.244 22 C -0.119 4.119 23 N -0.088 5.088 24 H 0.255 0.745 25 H 0.066 0.934 26 H 0.219 0.781 27 H 0.044 0.956 28 H 0.052 0.948 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.232 0.768 34 H 0.149 0.851 35 H 0.159 0.841 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 11.185 -20.001 -5.356 23.534 hybrid contribution -0.579 0.718 0.658 1.132 sum 10.606 -19.284 -4.698 22.504 Atomic orbital electron populations 1.69665 1.05157 1.25776 1.57474 1.24762 0.95561 0.97771 1.02768 0.86161 0.78630 0.83614 0.77617 1.21580 1.21683 1.20701 1.19232 0.91054 0.83989 1.43100 0.91119 1.42266 1.05915 0.99463 1.89517 1.20004 0.92999 0.84818 0.98613 1.23293 0.98981 0.94780 0.95925 1.22604 0.99072 1.02276 0.97820 1.20549 0.93926 0.84466 0.99282 1.46078 1.31824 1.15724 1.43270 1.17297 0.80869 0.88808 0.80608 1.90941 1.63858 1.47632 1.39862 1.22059 0.98980 0.98316 1.07478 1.20806 0.91882 0.97079 0.89795 1.17954 1.08699 0.85804 0.97865 1.21250 1.02826 0.98388 0.95991 1.20688 1.09309 0.94436 0.99939 1.21970 1.01289 0.97329 0.91325 1.42273 1.40460 1.08494 1.17619 0.74458 0.93423 0.78143 0.95557 0.94778 0.86917 0.87100 0.91182 0.89395 0.76806 0.85146 0.84060 0.84807 0.84977 0.82192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.46 13.06 55.49 0.72 -27.74 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.74 5.59 -61.09 -0.34 -19.08 16 10 C 0.16 3.28 6.40 -5.19 -0.03 3.25 16 11 C -0.11 -1.77 9.63 -36.03 -0.35 -2.12 16 12 C -0.20 -2.68 9.63 -36.03 -0.35 -3.03 16 13 C 0.14 1.98 5.81 -5.19 -0.03 1.95 16 14 N -0.72 -8.09 5.54 -64.44 -0.36 -8.45 16 15 C 0.53 6.64 7.07 -15.01 -0.11 6.53 16 16 O -0.54 -8.66 11.56 5.12 0.06 -8.60 16 17 C -0.25 -2.26 9.85 -39.27 -0.39 -2.64 16 18 C 0.03 0.23 9.96 -39.21 -0.39 -0.16 16 19 C 0.01 0.11 5.35 -83.91 -0.45 -0.34 16 20 C -0.16 -1.88 10.86 -38.98 -0.42 -2.30 16 21 C -0.22 -2.64 10.81 -39.98 -0.43 -3.08 16 22 C 0.02 0.23 11.90 -16.79 -0.20 0.03 16 23 N -0.50 -6.28 3.89 -10.56 -0.04 -6.32 16 24 H 0.42 5.17 7.36 -40.82 -0.30 4.87 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.38 10.40 7.66 -40.82 -0.31 10.08 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.03 0.70 5.20 -51.93 -0.27 0.43 16 29 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 30 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.09 1.42 5.21 -51.93 -0.27 1.15 16 33 H 0.40 3.32 8.42 -40.82 -0.34 2.98 16 34 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 38 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 325.95 15.07 4.91 4.91 Total: -1.00 -33.97 325.95 -8.31 -42.27 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -4.85 Total: 14.86 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -3.39 Total: -9.43 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: -0.02 Total: -61.59 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.06 Total: -8.60 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.97 -8.31 -42.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568841909.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.448 kcal (2) G-P(sol) polarization free energy of solvation -33.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds