Wall clock time and date at job start Mon Mar 30 2020 02:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00433 * 2 1 4 4 H 1.48500 * 109.46991 * 270.00143 * 3 2 1 5 5 H 1.48502 * 109.47024 * 29.99831 * 3 2 1 6 6 H 1.48498 * 109.47510 * 149.99808 * 3 2 1 7 7 C 1.38814 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99981 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99875 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99943 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47112 * 180.02562 * 10 9 7 12 12 C 1.31002 * 120.00130 * 124.90648 * 11 10 9 13 13 C 1.50696 * 119.99778 * 7.79051 * 12 11 10 14 14 N 1.46503 * 109.47289 * 125.33143 * 13 12 11 15 15 C 1.34770 * 120.00006 * 180.02562 * 14 13 12 16 16 O 1.21778 * 120.00608 * 359.97438 * 15 14 13 17 17 C 1.41525 * 119.99859 * 180.02562 * 15 14 13 18 18 C 1.35614 * 119.99954 * 186.93917 * 17 15 14 19 19 C 1.41672 * 119.99937 * 6.02595 * 18 17 15 20 20 C 1.38290 * 126.25969 * 219.73305 * 19 18 17 21 21 C 1.39784 * 107.07850 * 179.88666 * 20 19 18 22 22 C 1.35507 * 107.90875 * 0.37860 * 21 20 19 23 23 N 1.35752 * 108.90946 * 359.76760 * 22 21 20 24 24 H 0.97002 * 125.68816 * 179.97438 * 23 22 21 25 25 H 0.97002 * 119.99752 * 0.02562 * 1 2 3 26 26 H 0.97005 * 120.00124 * 0.02562 * 9 7 2 27 27 H 1.08991 * 109.47258 * 60.00397 * 10 9 7 28 28 H 1.09005 * 109.47160 * 299.99521 * 10 9 7 29 29 H 1.08003 * 119.99966 * 304.91081 * 11 10 9 30 30 H 1.08000 * 119.99751 * 187.50991 * 12 11 10 31 31 H 1.09003 * 109.47057 * 245.32499 * 13 12 11 32 32 H 1.08998 * 109.47116 * 5.32723 * 13 12 11 33 33 H 0.97002 * 119.99710 * 359.97438 * 14 13 12 34 34 H 1.07997 * 119.99857 * 6.93348 * 17 15 14 35 35 H 1.07996 * 119.99832 * 186.03247 * 18 17 15 36 36 H 1.08000 * 126.45489 * 0.02562 * 20 19 18 37 37 H 1.07995 * 126.04436 * 180.11891 * 21 20 19 38 38 H 1.07998 * 125.54109 * 179.73965 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0787 -4.8022 -0.0012 12 6 1.1468 -5.7218 -0.9317 13 6 2.3053 -5.7341 -1.8954 14 7 2.9507 -7.0490 -1.8664 15 6 4.0178 -7.2934 -2.6525 16 8 4.4453 -6.4215 -3.3872 17 6 4.6408 -8.5638 -2.6248 18 6 5.7953 -8.7678 -3.3066 19 6 6.4452 -7.6802 -3.9405 20 6 7.0632 -7.7050 -5.1774 21 6 7.5666 -6.4220 -5.4105 22 6 7.2639 -5.6539 -4.3360 23 7 6.5824 -6.4068 -3.4351 24 1 6.2480 -6.0990 -2.5781 25 1 -0.4850 0.8401 -0.0004 26 1 0.3555 -2.3880 -0.0005 27 1 2.6846 -3.7146 0.8894 28 1 2.6846 -3.7146 -0.8906 29 1 0.3206 -4.8650 0.7655 30 1 0.3750 -6.4737 -1.0054 31 1 1.9423 -5.5298 -2.9027 32 1 3.0261 -4.9691 -1.6068 33 1 2.6104 -7.7435 -1.2809 34 1 4.1970 -9.3708 -2.0608 35 1 6.2191 -9.7593 -3.3663 36 1 7.1402 -8.5549 -5.8393 37 1 8.1056 -6.1009 -6.2896 38 1 7.5231 -4.6125 -4.2157 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568841909.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:29 Heat of formation + Delta-G solvation = 63.658927 kcal Electronic energy + Delta-G solvation = -20034.006091 eV Core-core repulsion = 16878.752437 eV Total energy + Delta-G solvation = -3155.253654 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.13280 -40.52086 -38.04332 -36.14062 -34.64364 -34.39745 -32.38002 -31.70027 -29.55301 -27.96812 -26.60013 -24.45981 -24.08982 -21.91622 -21.16191 -20.80063 -20.03908 -19.25113 -18.49050 -17.72879 -17.11489 -16.46288 -16.40059 -15.62035 -15.48372 -15.32219 -15.10406 -14.70713 -14.60905 -14.25115 -14.17535 -13.80389 -13.73315 -13.22593 -13.05362 -12.94346 -12.80196 -12.75870 -12.19956 -11.93687 -11.69085 -11.07116 -11.01022 -10.78193 -10.33419 -9.95722 -9.52752 -9.02820 -8.51052 -8.00622 -5.30414 -0.15881 1.03018 1.44589 1.46679 1.55050 1.71187 2.10923 2.45308 2.51921 2.56640 2.70251 3.32938 3.76954 4.04848 4.10723 4.15069 4.18706 4.30407 4.41293 4.56234 4.57701 4.65864 4.70653 4.82609 4.87892 5.04016 5.10804 5.21882 5.40102 5.42580 5.43798 5.51519 5.55756 5.83302 6.13770 6.21953 6.31779 6.64303 6.78006 7.27916 7.31090 8.01488 8.26027 9.22837 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.018647 B = 0.003547 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.184900 B = 7892.521849 C = 9184.322568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.073 4.073 3 Si 0.975 3.025 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.269 1.269 7 C -0.252 4.252 8 H 0.074 0.926 9 N -0.742 5.742 10 C 0.162 3.838 11 C -0.136 4.136 12 C -0.159 4.159 13 C 0.143 3.857 14 N -0.705 5.705 15 C 0.525 3.475 16 O -0.584 6.584 17 C -0.244 4.244 18 C 0.026 3.974 19 C -0.003 4.003 20 C -0.177 4.177 21 C -0.233 4.233 22 C -0.007 4.007 23 N -0.504 5.504 24 H 0.412 0.588 25 H 0.253 0.747 26 H 0.375 0.625 27 H 0.024 0.976 28 H 0.033 0.967 29 H 0.124 0.876 30 H 0.148 0.852 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.416 0.584 34 H 0.171 0.829 35 H 0.182 0.818 36 H 0.155 0.845 37 H 0.145 0.855 38 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.223 -23.101 -4.921 26.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.265 4.265 3 Si 0.804 3.196 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.193 1.193 7 C -0.384 4.384 8 H 0.092 0.908 9 N -0.384 5.384 10 C 0.036 3.964 11 C -0.155 4.155 12 C -0.178 4.178 13 C 0.020 3.980 14 N -0.357 5.357 15 C 0.318 3.682 16 O -0.467 6.467 17 C -0.265 4.265 18 C 0.006 3.994 19 C -0.116 4.116 20 C -0.202 4.202 21 C -0.257 4.257 22 C -0.144 4.144 23 N -0.096 5.096 24 H 0.251 0.749 25 H 0.062 0.938 26 H 0.207 0.793 27 H 0.042 0.958 28 H 0.050 0.950 29 H 0.142 0.858 30 H 0.166 0.834 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.253 0.747 34 H 0.188 0.812 35 H 0.199 0.801 36 H 0.172 0.828 37 H 0.163 0.837 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 11.587 -22.331 -5.235 25.697 hybrid contribution -0.654 1.319 0.573 1.580 sum 10.933 -21.011 -4.662 24.140 Atomic orbital electron populations 1.69814 1.06619 1.26298 1.59068 1.25605 0.96479 1.01192 1.03274 0.85118 0.77762 0.79233 0.77517 1.21381 1.21732 1.19348 1.19631 0.91471 0.85350 1.41931 0.90831 1.42481 1.05691 1.00795 1.89478 1.20080 0.93747 0.84369 0.98171 1.23043 0.99447 0.94669 0.98323 1.22803 0.98492 1.01418 0.95089 1.20294 0.93753 0.85514 0.98461 1.45869 1.31451 1.14949 1.43428 1.17946 0.80724 0.89667 0.79896 1.90939 1.64913 1.49205 1.41645 1.22226 0.99015 0.97426 1.07844 1.21266 0.91655 0.97825 0.88656 1.18560 1.08564 0.86243 0.98217 1.21614 1.03099 0.98973 0.96511 1.21006 1.09472 0.94882 1.00316 1.22310 1.02104 0.98192 0.91833 1.42360 1.40589 1.09047 1.17583 0.74868 0.93795 0.79275 0.95782 0.94993 0.85812 0.83435 0.92715 0.91923 0.74662 0.81190 0.80074 0.82777 0.83710 0.81198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.02 13.06 21.65 0.28 -59.74 16 2 C -0.07 -4.28 5.50 84.86 0.47 -3.81 16 3 Si 0.98 46.85 29.55 68.60 2.03 48.88 16 4 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.25 -14.52 9.99 84.03 0.84 -13.68 16 8 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 9 N -0.74 -38.85 5.59 -347.17 -1.94 -40.79 16 10 C 0.16 6.60 6.40 85.63 0.55 7.14 16 11 C -0.14 -4.20 9.63 25.65 0.25 -3.95 16 12 C -0.16 -3.93 9.63 25.64 0.25 -3.68 16 13 C 0.14 3.91 5.81 85.63 0.50 4.40 16 14 N -0.71 -14.37 5.54 -475.96 -2.64 -17.01 16 15 C 0.53 12.23 7.07 85.05 0.60 12.84 16 16 O -0.58 -18.62 11.56 -4.60 -0.05 -18.67 16 17 C -0.24 -3.68 9.85 22.47 0.22 -3.46 16 18 C 0.03 0.40 9.96 22.51 0.22 0.63 16 19 C 0.00 -0.08 5.35 39.08 0.21 0.13 16 20 C -0.18 -4.02 10.86 22.66 0.25 -3.78 16 21 C -0.23 -5.61 10.81 22.01 0.24 -5.37 16 22 C -0.01 -0.18 11.90 83.45 0.99 0.81 16 23 N -0.50 -12.88 3.89 -187.33 -0.73 -13.61 16 24 H 0.41 10.56 7.36 -92.71 -0.68 9.88 16 25 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 26 H 0.38 20.71 7.66 -92.70 -0.71 20.00 16 27 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.03 1.34 5.20 -2.38 -0.01 1.33 16 29 H 0.12 3.58 8.06 -2.91 -0.02 3.56 16 30 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 31 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.06 2.06 5.21 -2.39 -0.01 2.04 16 33 H 0.42 5.47 8.42 -92.71 -0.78 4.69 16 34 H 0.17 1.18 8.06 -2.91 -0.02 1.15 16 35 H 0.18 1.25 8.06 -2.91 -0.02 1.22 16 36 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 37 H 0.15 2.92 8.06 -2.91 -0.02 2.89 16 38 H 0.17 3.62 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -74.98 325.95 1.46 -73.53 By element: Atomic # 1 Polarization: 40.27 SS G_CDS: -1.07 Total: 39.19 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: 5.58 Total: -11.78 kcal Atomic # 7 Polarization: -126.12 SS G_CDS: -5.02 Total: -131.14 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.05 Total: -18.67 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -74.98 1.46 -73.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568841909.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.186 kcal (2) G-P(sol) polarization free energy of solvation -74.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds