Wall clock time and date at job start Mon Mar 30 2020 02:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86792 * 119.99994 * 2 1 4 4 H 1.48500 * 109.47206 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47136 * 299.99842 * 3 2 1 6 6 H 1.48507 * 109.47015 * 59.99730 * 3 2 1 7 7 C 1.40034 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00061 * 189.72985 * 7 2 1 9 9 C 1.41542 * 120.00033 * 9.73380 * 7 2 1 10 10 C 1.41176 * 120.99603 * 26.35737 * 9 7 2 11 11 C 1.37598 * 119.01069 * 180.25198 * 10 9 7 12 12 N 1.32075 * 121.10999 * 359.75325 * 11 10 9 13 13 C 1.32466 * 122.23641 * 0.02562 * 12 11 10 14 14 N 1.39468 * 119.58198 * 180.02562 * 13 12 11 15 15 C 1.34776 * 119.99909 * 354.61838 * 14 13 12 16 16 O 1.21272 * 120.00290 * 354.92448 * 15 14 13 17 17 C 1.50697 * 119.99814 * 174.93133 * 15 14 13 18 18 C 1.53000 * 109.47270 * 179.97438 * 17 15 14 19 19 C 1.53773 * 113.61652 * 272.49923 * 18 17 15 20 20 C 1.53780 * 87.08043 * 220.01551 * 19 18 17 21 21 N 1.46903 * 113.61602 * 270.87828 * 20 19 18 22 22 C 1.53778 * 87.08346 * 25.43061 * 20 19 18 23 23 C 1.38596 * 120.83890 * 359.97438 * 13 12 11 24 24 H 0.97001 * 119.99969 * 359.97438 * 1 2 3 25 25 H 1.07992 * 120.49594 * 0.02772 * 10 9 7 26 26 H 1.08000 * 119.43913 * 179.76880 * 11 10 9 27 27 H 0.97005 * 120.00087 * 174.61430 * 14 13 12 28 28 H 1.09001 * 109.47150 * 299.99448 * 17 15 14 29 29 H 1.09003 * 109.47528 * 59.99356 * 17 15 14 30 30 H 1.09004 * 112.84596 * 43.80399 * 18 17 15 31 31 H 1.09001 * 113.61528 * 334.56275 * 19 18 17 32 32 H 1.09004 * 113.61450 * 105.46758 * 19 18 17 33 33 H 1.09005 * 113.61594 * 139.98181 * 20 19 18 34 34 H 1.00899 * 111.00564 * 277.50212 * 21 20 19 35 35 H 1.00908 * 110.99370 * 41.45534 * 21 20 19 36 36 H 1.08997 * 113.61790 * 220.01765 * 22 20 19 37 37 H 1.09002 * 113.61091 * 89.11414 * 22 20 19 38 38 H 1.08000 * 120.60291 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3463 0.0006 5 1 1.8827 2.3963 -1.2125 6 1 1.8826 2.3964 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0760 -1.2194 0.1586 9 6 1.3152 -2.4298 -0.2062 10 6 0.1059 -2.4637 -0.9338 11 6 -0.5360 -3.6686 -1.1057 12 7 -0.0367 -4.7850 -0.6069 13 6 1.0963 -4.8077 0.0792 14 7 1.5733 -6.0186 0.5807 15 6 0.8308 -7.1369 0.4608 16 8 -0.2895 -7.0746 0.0006 17 6 1.3926 -8.4649 0.8989 18 6 0.3544 -9.5625 0.6575 19 6 -0.6214 -9.7560 1.8301 20 6 -0.5055 -11.2679 1.5744 21 7 -1.4865 -11.7782 0.6074 22 6 0.8735 -10.9784 0.9585 23 6 1.8141 -3.6437 0.3041 24 1 -0.4850 0.8401 0.0004 25 1 -0.3112 -1.5570 -1.3463 26 1 -1.4635 -3.7020 -1.6579 27 1 2.4396 -6.0558 1.0157 28 1 2.2939 -8.6847 0.3266 29 1 1.6373 -8.4237 1.9603 30 1 -0.1371 -9.4745 -0.3114 31 1 -0.2155 -9.4434 2.7922 32 1 -1.6175 -9.3561 1.6397 33 1 -0.4601 -11.8628 2.4867 34 1 -2.3749 -11.9543 1.0521 35 1 -1.5910 -11.1440 -0.1705 36 1 1.0845 -11.5654 0.0647 37 1 1.6882 -11.0001 1.6824 38 1 2.7372 -3.6666 0.8643 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580055023.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:04 Heat of formation + Delta-G solvation = 13.034438 kcal Electronic energy + Delta-G solvation = -20319.895755 eV Core-core repulsion = 17162.446858 eV Total energy + Delta-G solvation = -3157.448896 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.06662 -39.02415 -37.60363 -34.46930 -33.54206 -32.45529 -30.67792 -29.59257 -27.94932 -26.00376 -25.72751 -23.37999 -21.82734 -21.42505 -19.57794 -19.01336 -17.90051 -16.77656 -16.28800 -15.81064 -15.52100 -15.11863 -14.93578 -14.22994 -14.03511 -13.89640 -13.69014 -13.45619 -12.99573 -12.60593 -12.49613 -12.37619 -12.11727 -11.68543 -11.41201 -11.25701 -11.00554 -10.97223 -10.49430 -10.38434 -10.19431 -9.99917 -9.72911 -9.42306 -9.30813 -8.86164 -8.02915 -7.74254 -7.03695 -6.76278 -4.64321 2.57456 2.73429 3.01109 3.06124 3.16079 3.49974 3.59932 3.84880 4.26449 4.47599 4.56599 4.68280 4.73434 4.85456 5.11693 5.38607 5.48508 5.55491 5.60690 5.68535 5.71848 5.79655 5.98261 6.01846 6.11264 6.34915 6.58389 6.60059 6.77188 6.90714 6.97401 7.13606 7.24807 7.39039 7.51105 7.80849 7.89841 8.18904 8.46235 8.68696 8.73811 8.87486 9.68624 10.08995 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.052316 B = 0.003146 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.082425 B = 8898.202546 C = 9203.754549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.074 3.926 3 Si 0.916 3.084 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.455 4.455 8 H 0.081 0.919 9 C 0.144 3.856 10 C -0.222 4.222 11 C 0.101 3.899 12 N -0.553 5.553 13 C 0.347 3.653 14 N -0.665 5.665 15 C 0.497 3.503 16 O -0.480 6.480 17 C -0.131 4.131 18 C -0.092 4.092 19 C -0.170 4.170 20 C 0.069 3.931 21 N -0.832 5.832 22 C -0.132 4.132 23 C -0.303 4.303 24 H 0.282 0.718 25 H 0.132 0.868 26 H 0.123 0.877 27 H 0.405 0.595 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.342 0.658 35 H 0.345 0.655 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.690 -13.431 3.507 14.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.144 4.144 3 Si 0.740 3.260 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.486 4.486 8 H 0.099 0.901 9 C 0.136 3.864 10 C -0.245 4.245 11 C -0.050 4.050 12 N -0.272 5.272 13 C 0.119 3.881 14 N -0.311 5.311 15 C 0.281 3.719 16 O -0.350 6.350 17 C -0.171 4.171 18 C -0.110 4.110 19 C -0.209 4.209 20 C -0.044 4.044 21 N -0.360 5.360 22 C -0.170 4.170 23 C -0.329 4.329 24 H 0.093 0.907 25 H 0.149 0.851 26 H 0.141 0.859 27 H 0.240 0.760 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.117 0.883 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.679 -14.723 2.934 15.106 hybrid contribution 0.779 2.643 0.736 2.852 sum 2.457 -12.080 3.670 12.862 Atomic orbital electron populations 1.69761 1.07585 1.29266 1.35113 1.25971 0.94878 1.01523 0.92032 0.86141 0.80730 0.80497 0.78650 1.18373 1.19619 1.19860 1.19598 0.95768 0.89989 1.43291 0.90133 1.17614 0.90911 0.91519 0.86386 1.22327 0.99582 0.98100 1.04490 1.21921 0.97904 0.88110 0.97049 1.67189 1.12958 1.30350 1.16749 1.18034 0.92011 0.83804 0.94216 1.43544 1.21728 1.07153 1.58654 1.20714 0.86333 0.85235 0.79578 1.90761 1.17776 1.85742 1.40696 1.21706 1.00025 0.92593 1.02823 1.22296 0.96009 0.92768 0.99977 1.23811 1.00593 0.97712 0.98819 1.22432 0.93579 0.93334 0.95033 1.58714 1.13412 1.52043 1.11877 1.23140 0.96455 0.96010 1.01428 1.21238 1.04926 0.92620 1.14071 0.90714 0.85058 0.85940 0.76048 0.89047 0.89276 0.88311 0.90041 0.91383 0.89630 0.84503 0.84138 0.90783 0.89676 0.88094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.98 10.70 55.55 0.59 -19.39 16 2 C 0.07 1.82 5.31 -17.34 -0.09 1.72 16 3 Si 0.92 18.06 29.57 -169.99 -5.03 13.04 16 4 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 5 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 6 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.46 -11.72 9.13 -37.65 -0.34 -12.06 16 8 H 0.08 1.97 7.87 -52.49 -0.41 1.56 16 9 C 0.14 3.80 5.60 -106.55 -0.60 3.21 16 10 C -0.22 -5.81 8.77 -38.70 -0.34 -6.15 16 11 C 0.10 2.56 11.15 -17.68 -0.20 2.36 16 12 N -0.55 -14.24 7.89 -12.52 -0.10 -14.33 16 13 C 0.35 8.19 7.40 -154.71 -1.15 7.05 16 14 N -0.66 -12.18 5.39 -11.49 -0.06 -12.24 16 15 C 0.50 8.79 7.78 -10.99 -0.09 8.70 16 16 O -0.48 -10.63 14.05 5.56 0.08 -10.55 16 17 C -0.13 -1.54 5.54 -27.88 -0.15 -1.69 16 18 C -0.09 -1.06 2.81 -89.81 -0.25 -1.31 16 19 C -0.17 -1.87 7.35 -25.92 -0.19 -2.06 16 20 C 0.07 0.65 5.18 -66.90 -0.35 0.30 16 21 N -0.83 -7.81 9.64 -3.97 -0.04 -7.85 16 22 C -0.13 -1.22 7.44 -25.92 -0.19 -1.42 16 23 C -0.30 -7.30 9.73 -38.47 -0.37 -7.68 16 24 H 0.28 6.43 8.29 -40.82 -0.34 6.09 16 25 H 0.13 3.48 6.11 -52.49 -0.32 3.16 16 26 H 0.12 2.78 8.06 -52.49 -0.42 2.36 16 27 H 0.41 5.70 8.70 -40.82 -0.36 5.34 16 28 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.09 0.86 7.84 -51.93 -0.41 0.45 16 30 H 0.10 1.35 7.25 -51.93 -0.38 0.97 16 31 H 0.08 0.84 7.90 -51.93 -0.41 0.43 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.34 2.70 9.08 -39.29 -0.36 2.35 16 35 H 0.35 3.38 8.15 -39.29 -0.32 3.06 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 38 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 319.71 15.07 4.82 4.82 Total: -1.00 -31.59 319.71 -9.10 -40.69 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -5.05 Total: 14.85 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -4.31 Total: -9.02 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: 0.40 Total: -53.82 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.08 Total: -10.55 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.59 -9.10 -40.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055023.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.725 kcal (2) G-P(sol) polarization free energy of solvation -31.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds