Wall clock time and date at job start Mon Mar 30 2020 02:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86792 * 119.99994 * 2 1 4 4 H 1.48500 * 109.47206 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47136 * 299.99842 * 3 2 1 6 6 H 1.48507 * 109.47015 * 59.99730 * 3 2 1 7 7 C 1.40034 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00061 * 189.72985 * 7 2 1 9 9 C 1.41542 * 120.00033 * 9.73380 * 7 2 1 10 10 C 1.41176 * 120.99603 * 26.35737 * 9 7 2 11 11 C 1.37598 * 119.01069 * 180.25198 * 10 9 7 12 12 N 1.32075 * 121.10999 * 359.75325 * 11 10 9 13 13 C 1.32466 * 122.23641 * 0.02562 * 12 11 10 14 14 N 1.39468 * 119.58198 * 180.02562 * 13 12 11 15 15 C 1.34776 * 119.99909 * 354.61838 * 14 13 12 16 16 O 1.21272 * 120.00290 * 354.92448 * 15 14 13 17 17 C 1.50697 * 119.99814 * 174.93133 * 15 14 13 18 18 C 1.53000 * 109.47270 * 179.97438 * 17 15 14 19 19 C 1.53773 * 113.61652 * 272.49923 * 18 17 15 20 20 C 1.53780 * 87.08043 * 220.01551 * 19 18 17 21 21 N 1.46903 * 113.61602 * 270.87828 * 20 19 18 22 22 C 1.53778 * 87.08346 * 25.43061 * 20 19 18 23 23 C 1.38596 * 120.83890 * 359.97438 * 13 12 11 24 24 H 0.97001 * 119.99969 * 359.97438 * 1 2 3 25 25 H 1.07992 * 120.49594 * 0.02772 * 10 9 7 26 26 H 1.08000 * 119.43913 * 179.76880 * 11 10 9 27 27 H 0.97005 * 120.00087 * 174.61430 * 14 13 12 28 28 H 1.09001 * 109.47150 * 299.99448 * 17 15 14 29 29 H 1.09003 * 109.47528 * 59.99356 * 17 15 14 30 30 H 1.09004 * 112.84596 * 43.80399 * 18 17 15 31 31 H 1.09001 * 113.61528 * 334.56275 * 19 18 17 32 32 H 1.09004 * 113.61450 * 105.46758 * 19 18 17 33 33 H 1.09005 * 113.61594 * 139.98181 * 20 19 18 34 34 H 1.00899 * 111.00564 * 277.50212 * 21 20 19 35 35 H 1.00908 * 110.99370 * 41.45534 * 21 20 19 36 36 H 1.08997 * 113.61790 * 220.01765 * 22 20 19 37 37 H 1.09002 * 113.61091 * 89.11414 * 22 20 19 38 38 H 1.08000 * 120.60291 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3463 0.0006 5 1 1.8827 2.3963 -1.2125 6 1 1.8826 2.3964 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0760 -1.2194 0.1586 9 6 1.3152 -2.4298 -0.2062 10 6 0.1059 -2.4637 -0.9338 11 6 -0.5360 -3.6686 -1.1057 12 7 -0.0367 -4.7850 -0.6069 13 6 1.0963 -4.8077 0.0792 14 7 1.5733 -6.0186 0.5807 15 6 0.8308 -7.1369 0.4608 16 8 -0.2895 -7.0746 0.0006 17 6 1.3926 -8.4649 0.8989 18 6 0.3544 -9.5625 0.6575 19 6 -0.6214 -9.7560 1.8301 20 6 -0.5055 -11.2679 1.5744 21 7 -1.4865 -11.7782 0.6074 22 6 0.8735 -10.9784 0.9585 23 6 1.8141 -3.6437 0.3041 24 1 -0.4850 0.8401 0.0004 25 1 -0.3112 -1.5570 -1.3463 26 1 -1.4635 -3.7020 -1.6579 27 1 2.4396 -6.0558 1.0157 28 1 2.2939 -8.6847 0.3266 29 1 1.6373 -8.4237 1.9603 30 1 -0.1371 -9.4745 -0.3114 31 1 -0.2155 -9.4434 2.7922 32 1 -1.6175 -9.3561 1.6397 33 1 -0.4601 -11.8628 2.4867 34 1 -2.3749 -11.9543 1.0521 35 1 -1.5910 -11.1440 -0.1705 36 1 1.0845 -11.5654 0.0647 37 1 1.6882 -11.0001 1.6824 38 1 2.7372 -3.6666 0.8643 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580055023.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:03 Heat of formation + Delta-G solvation = -8.411835 kcal Electronic energy + Delta-G solvation = -20320.825735 eV Core-core repulsion = 17162.446858 eV Total energy + Delta-G solvation = -3158.378877 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.38414 -40.30426 -39.19095 -36.24407 -35.28058 -33.35139 -32.60566 -30.93769 -29.36846 -27.92845 -26.51801 -24.58582 -23.69161 -22.92747 -21.10133 -19.85636 -19.64535 -18.16608 -17.71984 -17.10091 -16.78564 -16.60128 -16.04848 -16.02763 -15.79207 -15.17769 -14.76967 -14.70611 -14.54563 -14.22188 -14.05093 -13.34934 -13.25048 -13.08690 -12.88932 -12.87239 -12.57159 -12.09554 -11.84819 -11.82185 -11.47069 -11.36565 -11.20982 -11.00220 -10.85424 -9.98502 -9.63405 -9.60686 -8.87588 -8.60692 -6.60765 0.74920 0.94768 1.40074 1.52933 1.55871 1.95261 2.16179 2.22689 2.81340 3.50964 3.57190 3.70464 3.73262 3.87625 3.93068 4.08719 4.23012 4.57328 4.57904 4.71251 4.75435 4.84737 4.87053 4.91535 4.93128 5.02097 5.04185 5.18931 5.24017 5.28183 5.45544 5.49866 5.65182 5.95113 6.12972 6.23307 6.45298 6.53217 6.64614 6.78421 6.81406 7.36907 7.84000 8.27283 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.052316 B = 0.003146 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.082425 B = 8898.202546 C = 9203.754549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.032 3.968 3 Si 0.994 3.006 4 H -0.253 1.253 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.481 4.481 8 H 0.088 0.912 9 C 0.116 3.884 10 C -0.243 4.243 11 C 0.094 3.906 12 N -0.578 5.578 13 C 0.345 3.655 14 N -0.655 5.655 15 C 0.490 3.510 16 O -0.530 6.530 17 C -0.116 4.116 18 C -0.099 4.099 19 C -0.172 4.172 20 C 0.072 3.928 21 N -0.837 5.837 22 C -0.117 4.117 23 C -0.312 4.312 24 H 0.291 0.709 25 H 0.120 0.880 26 H 0.137 0.863 27 H 0.426 0.574 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.040 0.960 33 H 0.102 0.898 34 H 0.349 0.651 35 H 0.340 0.660 36 H 0.071 0.929 37 H 0.111 0.889 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.764 -14.172 4.784 15.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.184 4.184 3 Si 0.814 3.186 4 H -0.177 1.177 5 H -0.189 1.189 6 H -0.191 1.191 7 C -0.512 4.512 8 H 0.106 0.894 9 C 0.107 3.893 10 C -0.266 4.266 11 C -0.057 4.057 12 N -0.298 5.298 13 C 0.116 3.884 14 N -0.303 5.303 15 C 0.278 3.722 16 O -0.403 6.403 17 C -0.156 4.156 18 C -0.118 4.118 19 C -0.212 4.212 20 C -0.041 4.041 21 N -0.366 5.366 22 C -0.154 4.154 23 C -0.338 4.338 24 H 0.102 0.898 25 H 0.138 0.862 26 H 0.155 0.845 27 H 0.265 0.735 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.059 0.941 33 H 0.120 0.880 34 H 0.163 0.837 35 H 0.153 0.847 36 H 0.090 0.910 37 H 0.129 0.871 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.782 -15.512 4.236 16.519 hybrid contribution 0.077 2.819 0.349 2.842 sum 3.859 -12.693 4.585 14.037 Atomic orbital electron populations 1.69825 1.09205 1.30833 1.34888 1.26932 0.95644 1.04955 0.90840 0.84979 0.79357 0.75385 0.78910 1.17661 1.18941 1.19081 1.19921 0.96270 0.90728 1.44279 0.89439 1.18038 0.91374 0.92970 0.86886 1.22278 1.00479 0.97970 1.05899 1.22183 0.98430 0.88029 0.97042 1.67304 1.14226 1.30358 1.17889 1.18372 0.91163 0.85743 0.93147 1.43596 1.22736 1.05762 1.58224 1.21878 0.85612 0.86636 0.78042 1.90746 1.20189 1.86548 1.42824 1.21765 1.00528 0.88286 1.04980 1.22271 0.96345 0.94383 0.98803 1.23856 0.99127 0.99098 0.99104 1.22491 0.93721 0.92302 0.95565 1.58764 1.14089 1.51756 1.11967 1.23108 0.96918 0.93548 1.01858 1.21447 1.05832 0.92227 1.14301 0.89826 0.86194 0.84529 0.73548 0.86197 0.86023 0.91209 0.88893 0.94092 0.88028 0.83747 0.84692 0.91015 0.87097 0.85826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.02 10.70 21.84 0.23 -41.79 16 2 C 0.03 1.57 5.31 85.29 0.45 2.02 16 3 Si 0.99 36.39 29.57 68.60 2.03 38.42 16 4 H -0.25 -8.92 7.11 99.48 0.71 -8.22 16 5 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 6 H -0.27 -9.38 7.11 99.48 0.71 -8.67 16 7 C -0.48 -24.94 9.13 23.52 0.21 -24.73 16 8 H 0.09 4.26 7.87 -2.91 -0.02 4.24 16 9 C 0.12 6.23 5.60 -21.11 -0.12 6.11 16 10 C -0.24 -13.18 8.77 22.84 0.20 -12.98 16 11 C 0.09 4.93 11.15 84.50 0.94 5.87 16 12 N -0.58 -30.40 7.89 -193.53 -1.53 -31.92 16 13 C 0.34 16.30 7.40 132.75 0.98 17.29 16 14 N -0.65 -23.18 5.39 -308.67 -1.66 -24.85 16 15 C 0.49 16.86 7.78 87.66 0.68 17.54 16 16 O -0.53 -23.87 14.05 -3.00 -0.04 -23.91 16 17 C -0.12 -2.38 5.54 29.85 0.17 -2.22 16 18 C -0.10 -2.12 2.81 -10.27 -0.03 -2.15 16 19 C -0.17 -3.57 7.35 31.12 0.23 -3.34 16 20 C 0.07 1.20 5.18 45.44 0.24 1.44 16 21 N -0.84 -14.97 9.64 -166.49 -1.60 -16.58 16 22 C -0.12 -1.80 7.44 31.12 0.23 -1.57 16 23 C -0.31 -15.11 9.73 22.99 0.22 -14.89 16 24 H 0.29 13.34 8.29 -92.71 -0.77 12.58 16 25 H 0.12 6.66 6.11 -2.91 -0.02 6.64 16 26 H 0.14 6.46 8.06 -2.91 -0.02 6.44 16 27 H 0.43 10.95 8.70 -92.70 -0.81 10.14 16 28 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.12 1.79 7.84 -2.39 -0.02 1.77 16 30 H 0.07 1.92 7.25 -2.38 -0.02 1.91 16 31 H 0.09 1.69 7.90 -2.39 -0.02 1.67 16 32 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.35 5.27 9.08 -89.69 -0.81 4.46 16 35 H 0.34 6.70 8.15 -89.69 -0.73 5.97 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.11 1.18 8.10 -2.39 -0.02 1.16 16 38 H 0.12 5.23 8.06 -2.91 -0.02 5.20 16 Total: -1.00 -70.77 319.71 0.60 -70.17 By element: Atomic # 1 Polarization: 43.31 SS G_CDS: -1.24 Total: 42.07 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: 4.41 Total: -11.62 kcal Atomic # 7 Polarization: -110.57 SS G_CDS: -4.56 Total: -115.13 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.04 Total: -23.91 kcal Atomic # 14 Polarization: 36.39 SS G_CDS: 2.03 Total: 38.42 kcal Total: -70.77 0.60 -70.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055023.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.754 kcal (2) G-P(sol) polarization free energy of solvation -70.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds