Wall clock time and date at job start Mon Mar 30 2020 01:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86803 * 120.00151 * 2 1 4 4 H 1.48501 * 109.47412 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46951 * 300.00141 * 3 2 1 6 6 H 1.48497 * 109.47440 * 59.99878 * 3 2 1 7 7 C 1.39893 * 120.00085 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00048 * 175.55869 * 7 2 1 9 9 C 1.41155 * 120.00024 * 355.56419 * 7 2 1 10 10 C 1.40865 * 120.16165 * 214.78367 * 9 7 2 11 11 C 1.36379 * 119.82577 * 179.97438 * 10 9 7 12 12 C 1.39478 * 120.16805 * 0.02562 * 11 10 9 13 13 N 1.39244 * 119.83360 * 179.97438 * 12 11 10 14 14 C 1.34773 * 119.99984 * 35.29496 * 13 12 11 15 15 O 1.21577 * 120.00278 * 355.71663 * 14 13 12 16 16 N 1.34773 * 120.00170 * 175.71560 * 14 13 12 17 17 C 1.46494 * 120.00365 * 180.02562 * 16 14 13 18 18 H 1.09002 * 112.84850 * 23.80020 * 17 16 14 19 19 C 1.53779 * 113.61996 * 154.99652 * 17 16 14 20 20 C 1.53781 * 87.08098 * 89.11610 * 19 17 16 21 21 H 1.09003 * 113.61570 * 270.88884 * 20 19 17 22 22 N 1.46899 * 113.61393 * 140.07014 * 20 19 17 23 23 C 1.53776 * 113.61645 * 252.49613 * 17 16 14 24 24 C 1.39479 * 120.33649 * 0.25734 * 12 11 10 25 25 C 1.36376 * 120.16478 * 359.47625 * 24 12 11 26 26 H 0.97002 * 119.99999 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.08875 * 359.97438 * 10 9 7 28 28 H 1.07998 * 119.91536 * 180.02562 * 11 10 9 29 29 H 0.97002 * 120.00339 * 215.30046 * 13 12 11 30 30 H 0.97007 * 120.00122 * 359.97438 * 16 14 13 31 31 H 1.09002 * 113.61140 * 334.57145 * 19 17 16 32 32 H 1.08994 * 113.69724 * 203.67737 * 19 17 16 33 33 H 1.00902 * 111.00265 * 181.52827 * 22 20 19 34 34 H 1.00897 * 111.00090 * 305.48015 * 22 20 19 35 35 H 1.09002 * 113.61649 * 156.33281 * 23 17 16 36 36 H 1.09000 * 113.61613 * 25.42928 * 23 17 16 37 37 H 1.08001 * 119.92205 * 179.74865 * 24 12 11 38 38 H 1.08006 * 120.08510 * 180.27829 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.7028 1.3464 -0.0006 5 1 1.8840 2.3965 -1.2126 6 1 1.8841 2.3965 1.2124 7 6 2.0082 -1.2115 0.0005 8 1 3.0858 -1.2129 -0.0719 9 6 1.3057 -2.4321 0.0956 10 6 1.8649 -3.5178 0.7976 11 6 1.1799 -4.6938 0.8856 12 6 -0.0710 -4.8231 0.2824 13 7 -0.7641 -6.0272 0.3762 14 6 -0.6821 -6.7661 1.5003 15 8 0.0573 -6.4215 2.4017 16 7 -1.4199 -7.8871 1.6252 17 6 -1.3312 -8.6900 2.8473 18 1 -0.9936 -8.1137 3.7087 19 6 -2.5879 -9.5321 3.1238 20 6 -1.9335 -10.6415 2.2837 21 1 -2.1641 -10.5777 1.2203 22 7 -2.1342 -11.9899 2.8310 23 6 -0.5788 -10.0178 2.6588 24 6 -0.6286 -3.7545 -0.4193 25 6 0.0420 -2.5706 -0.5114 26 1 -0.4850 0.8401 0.0004 27 1 2.8336 -3.4192 1.2648 28 1 1.6071 -5.5270 1.4237 29 1 -1.3059 -6.3342 -0.3676 30 1 -2.0102 -8.1619 0.9061 31 1 -3.4943 -9.1234 2.6770 32 1 -2.7156 -9.7969 4.1733 33 1 -1.6689 -12.6831 2.2644 34 1 -1.8255 -12.0405 3.7902 35 1 -0.1559 -10.4148 3.5816 36 1 0.1368 -10.0013 1.8368 37 1 -1.5959 -3.8633 -0.8873 38 1 -0.3930 -1.7424 -1.0513 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580055812.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:57 Heat of formation + Delta-G solvation = -7.262035 kcal Electronic energy + Delta-G solvation = -20279.726035 eV Core-core repulsion = 17121.397017 eV Total energy + Delta-G solvation = -3158.329017 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.63669 -40.16891 -38.92333 -36.14007 -35.05170 -34.43320 -32.01107 -31.43578 -30.45393 -26.84302 -26.65249 -24.57173 -23.39650 -22.76133 -21.79092 -20.38894 -19.55343 -19.13965 -18.08279 -17.13366 -17.01807 -16.61433 -16.27286 -15.98743 -15.67376 -15.41448 -14.91080 -14.53877 -14.21885 -14.01207 -13.81436 -13.56601 -13.44009 -13.23893 -12.87738 -12.76803 -12.63058 -12.47699 -11.86747 -11.78513 -11.43378 -11.38115 -11.24926 -11.01736 -10.66142 -10.09317 -9.51517 -9.45254 -8.68165 -8.48851 -6.31203 0.85011 1.15432 1.40077 1.46914 1.55293 1.71863 2.17679 2.25657 2.82231 3.33148 3.47716 3.61760 3.69735 3.82091 3.97713 4.10248 4.40250 4.52861 4.67968 4.74698 4.83300 4.93416 4.94574 5.04353 5.14337 5.14879 5.17219 5.34065 5.45257 5.63586 5.70580 5.83466 6.04461 6.12755 6.24269 6.26545 6.41155 6.62532 6.69891 6.98472 7.02444 7.15559 7.65046 8.44130 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.058701 B = 0.003031 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.882473 B = 9236.754727 C = 9392.872584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.027 3.973 3 Si 0.989 3.011 4 H -0.261 1.261 5 H -0.262 1.262 6 H -0.270 1.270 7 C -0.498 4.498 8 H 0.071 0.929 9 C 0.065 3.935 10 C -0.220 4.220 11 C -0.098 4.098 12 C 0.041 3.959 13 N -0.658 5.658 14 C 0.694 3.306 15 O -0.624 6.624 16 N -0.709 5.709 17 C 0.128 3.872 18 H 0.075 0.925 19 C -0.127 4.127 20 C 0.084 3.916 21 H 0.108 0.892 22 N -0.843 5.843 23 C -0.187 4.187 24 C -0.120 4.120 25 C -0.158 4.158 26 H 0.284 0.716 27 H 0.094 0.906 28 H 0.106 0.894 29 H 0.415 0.585 30 H 0.412 0.588 31 H 0.083 0.917 32 H 0.104 0.896 33 H 0.350 0.650 34 H 0.348 0.652 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.126 0.874 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.709 -17.841 1.117 19.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.185 4.185 3 Si 0.810 3.190 4 H -0.185 1.185 5 H -0.187 1.187 6 H -0.195 1.195 7 C -0.529 4.529 8 H 0.089 0.911 9 C 0.063 3.937 10 C -0.240 4.240 11 C -0.118 4.118 12 C -0.053 4.053 13 N -0.306 5.306 14 C 0.395 3.605 15 O -0.505 6.505 16 N -0.365 5.365 17 C 0.021 3.979 18 H 0.093 0.907 19 C -0.166 4.166 20 C -0.028 4.028 21 H 0.126 0.874 22 N -0.372 5.372 23 C -0.228 4.228 24 C -0.140 4.140 25 C -0.178 4.178 26 H 0.095 0.905 27 H 0.113 0.887 28 H 0.124 0.876 29 H 0.252 0.748 30 H 0.249 0.751 31 H 0.101 0.899 32 H 0.122 0.878 33 H 0.163 0.837 34 H 0.162 0.838 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.144 0.856 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.069 -17.315 1.798 18.789 hybrid contribution 1.112 0.696 -0.321 1.351 sum -5.957 -16.619 1.477 17.716 Atomic orbital electron populations 1.69833 1.08533 1.29832 1.38858 1.26731 0.95832 1.04280 0.91648 0.85058 0.79026 0.76162 0.78779 1.18478 1.18687 1.19476 1.19728 0.94772 0.91345 1.47018 0.91050 1.18032 0.93451 0.92680 0.89556 1.20924 1.01566 0.95519 1.05954 1.20514 0.93809 0.97429 1.00090 1.17091 0.92958 0.86480 1.08791 1.41871 1.51471 1.20788 1.16473 1.16191 0.81170 0.80798 0.82382 1.90882 1.44217 1.72958 1.42405 1.44539 1.46747 1.24348 1.20913 1.21613 0.98892 0.90660 0.86691 0.90690 1.23419 0.96442 0.94504 1.02258 1.22844 0.92527 0.88180 0.99272 0.87364 1.58675 1.66185 1.04641 1.07686 1.24318 0.98987 0.97009 1.02505 1.20534 0.99352 0.91946 1.02165 1.21173 0.97457 0.96408 1.02763 0.90526 0.88731 0.87620 0.74807 0.75084 0.89865 0.87785 0.83662 0.83835 0.88685 0.92240 0.85645 0.86233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.06 10.60 21.82 0.23 -44.83 16 2 C 0.03 1.39 5.42 85.24 0.46 1.85 16 3 Si 0.99 39.80 29.56 68.60 2.03 41.83 16 4 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 5 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 6 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 7 C -0.50 -27.86 9.02 23.39 0.21 -27.65 16 8 H 0.07 3.88 7.85 -2.91 -0.02 3.86 16 9 C 0.07 3.67 5.55 -21.28 -0.12 3.55 16 10 C -0.22 -11.75 9.74 22.48 0.22 -11.53 16 11 C -0.10 -4.88 8.61 22.13 0.19 -4.69 16 12 C 0.04 1.82 6.31 38.56 0.24 2.06 16 13 N -0.66 -22.14 5.31 -316.80 -1.68 -23.82 16 14 C 0.69 23.98 8.39 179.06 1.50 25.48 16 15 O -0.62 -28.10 13.36 -3.96 -0.05 -28.15 16 16 N -0.71 -16.25 5.27 -455.33 -2.40 -18.65 16 17 C 0.13 2.70 4.32 45.52 0.20 2.89 16 18 H 0.07 2.05 7.46 -2.39 -0.02 2.03 16 19 C -0.13 -1.82 7.61 31.12 0.24 -1.58 16 20 C 0.08 1.06 4.88 45.44 0.22 1.28 16 21 H 0.11 1.23 8.14 -2.39 -0.02 1.22 16 22 N -0.84 -9.08 9.63 -166.50 -1.60 -10.69 16 23 C -0.19 -3.12 7.60 31.12 0.24 -2.88 16 24 C -0.12 -5.41 9.90 22.13 0.22 -5.19 16 25 C -0.16 -8.35 8.62 22.48 0.19 -8.16 16 26 H 0.28 13.75 8.30 -92.71 -0.77 12.98 16 27 H 0.09 4.88 8.06 -2.91 -0.02 4.86 16 28 H 0.11 5.29 6.22 -2.91 -0.02 5.27 16 29 H 0.41 10.08 8.83 -92.71 -0.82 9.27 16 30 H 0.41 6.35 8.72 -92.70 -0.81 5.55 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.35 2.94 9.08 -89.69 -0.81 2.12 16 34 H 0.35 3.14 8.87 -89.70 -0.80 2.35 16 35 H 0.09 1.43 8.06 -2.39 -0.02 1.41 16 36 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.13 4.71 8.06 -2.91 -0.02 4.69 16 38 H 0.12 6.56 6.13 -2.91 -0.02 6.54 16 Total: -1.00 -70.31 319.22 -1.57 -71.88 By element: Atomic # 1 Polarization: 39.10 SS G_CDS: -2.11 Total: 37.00 kcal Atomic # 6 Polarization: -28.58 SS G_CDS: 4.02 Total: -24.56 kcal Atomic # 7 Polarization: -92.53 SS G_CDS: -5.45 Total: -97.99 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -0.05 Total: -28.15 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Total: -70.31 -1.57 -71.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055812.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.618 kcal (2) G-P(sol) polarization free energy of solvation -70.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds