Wall clock time and date at job start Mon Mar 30 2020 01:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86791 * 120.00249 * 2 1 4 4 H 1.48500 * 109.47496 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47493 * 300.00412 * 3 2 1 6 6 H 1.48508 * 109.47069 * 60.00588 * 3 2 1 7 7 C 1.39939 * 119.99758 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99601 * 196.79726 * 7 2 1 9 9 C 1.41406 * 119.99959 * 16.78954 * 7 2 1 10 10 C 1.40777 * 120.21265 * 25.15401 * 9 7 2 11 11 C 1.37642 * 119.88633 * 180.02562 * 10 9 7 12 12 C 1.38531 * 120.31719 * 359.74634 * 11 10 9 13 13 C 1.39247 * 120.42957 * 0.51381 * 12 11 10 14 14 N 1.39960 * 119.94197 * 179.75743 * 13 12 11 15 15 C 1.34776 * 120.00470 * 325.51843 * 14 13 12 16 16 O 1.21582 * 119.99968 * 354.85450 * 15 14 13 17 17 N 1.34780 * 119.99861 * 174.84932 * 15 14 13 18 18 C 1.46500 * 119.99835 * 179.72248 * 17 15 14 19 19 H 1.09002 * 112.84791 * 24.08309 * 18 17 15 20 20 C 1.53778 * 113.61451 * 155.27550 * 18 17 15 21 21 C 1.53782 * 87.08065 * 139.98270 * 20 18 17 22 22 H 1.08997 * 113.60872 * 89.11564 * 21 20 18 23 23 N 1.46890 * 113.61544 * 220.01962 * 21 20 18 24 24 C 1.53777 * 113.61756 * 252.77569 * 18 17 15 25 25 C 1.38275 * 120.10745 * 359.48749 * 13 12 11 26 26 H 0.97002 * 120.00135 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.05623 * 0.04351 * 10 9 7 28 28 H 1.07995 * 119.83923 * 179.97438 * 11 10 9 29 29 H 1.07996 * 119.78371 * 180.27168 * 12 11 10 30 30 H 0.97005 * 119.99271 * 145.51571 * 14 13 12 31 31 H 0.97000 * 120.00065 * 0.02562 * 17 15 14 32 32 H 1.08999 * 113.61479 * 254.53457 * 20 18 17 33 33 H 1.09004 * 113.60950 * 25.34994 * 20 18 17 34 34 H 1.00902 * 111.00373 * 180.02562 * 23 21 20 35 35 H 1.00904 * 111.00182 * 303.95360 * 23 21 20 36 36 H 1.09000 * 113.61005 * 334.56975 * 24 18 17 37 37 H 1.09000 * 113.60948 * 105.46850 * 24 18 17 38 38 H 1.07998 * 120.15674 * 180.27841 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8836 2.3964 -1.2124 6 1 1.8837 2.3963 1.2126 7 6 2.0079 -1.2119 -0.0005 8 1 3.0533 -1.2320 0.2697 9 6 1.3460 -2.4103 -0.3548 10 6 0.2105 -2.3732 -1.1861 11 6 -0.4289 -3.5437 -1.5263 12 6 0.0427 -4.7595 -1.0588 13 6 1.1615 -4.8110 -0.2314 14 7 1.6261 -6.0445 0.2391 15 6 0.7519 -7.0303 0.5230 16 8 -0.4437 -6.8191 0.4602 17 7 1.2033 -8.2501 0.8763 18 6 0.2530 -9.3199 1.1908 19 1 -0.7208 -9.1716 0.7241 20 6 0.8256 -10.7323 0.9860 21 6 0.0896 -11.1324 2.2756 22 1 -0.9295 -11.4801 2.1066 23 7 0.8647 -12.0317 3.1406 24 6 0.1753 -9.6540 2.6898 25 6 1.8175 -3.6460 0.1214 26 1 -0.4850 0.8401 0.0004 27 1 -0.1581 -1.4281 -1.5565 28 1 -1.3002 -3.5144 -2.1637 29 1 -0.4631 -5.6730 -1.3347 30 1 2.5775 -6.1899 0.3609 31 1 2.1572 -8.4185 0.9267 32 1 0.4471 -11.2319 0.0942 33 1 1.9115 -10.7794 1.0688 34 1 0.3460 -12.2688 3.9730 35 1 1.1445 -12.8623 2.6405 36 1 1.0833 -9.4065 3.2398 37 1 -0.7282 -9.2829 3.1735 38 1 2.6879 -3.6855 0.7594 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580055834.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:07 Heat of formation + Delta-G solvation = 11.653668 kcal Electronic energy + Delta-G solvation = -20221.347974 eV Core-core repulsion = 17063.839203 eV Total energy + Delta-G solvation = -3157.508771 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.22750 -38.87123 -37.12966 -34.36027 -33.85640 -32.95528 -31.28578 -29.76849 -27.93721 -25.91357 -25.17676 -23.66356 -21.39757 -20.84284 -20.22415 -19.64772 -17.87092 -17.58746 -16.56809 -15.95438 -15.56737 -15.29252 -15.04732 -14.75480 -14.34712 -14.20074 -13.63768 -13.00507 -12.86536 -12.62880 -12.33525 -12.13811 -11.78850 -11.59838 -11.20998 -11.11588 -11.08110 -10.86658 -10.64970 -10.44406 -10.15978 -9.56554 -9.51190 -9.17425 -9.11425 -8.90527 -8.83539 -7.40139 -6.84104 -6.66659 -4.30808 2.80309 2.86858 3.05937 3.11115 3.16172 3.26218 3.71522 3.97654 4.24453 4.30296 4.37379 4.65735 4.71225 4.76096 4.78612 5.33961 5.49874 5.59476 5.74140 5.81887 5.87462 6.04409 6.34007 6.62281 6.66211 6.80326 6.83844 6.93826 7.00180 7.05531 7.09369 7.29382 7.44110 7.68770 7.87672 8.08868 8.14563 8.30884 8.48230 8.68414 8.93814 8.97972 9.09323 10.26032 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.043990 B = 0.003109 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.360814 B = 9004.793219 C = 9263.825298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.465 4.465 8 H 0.077 0.923 9 C 0.122 3.878 10 C -0.170 4.170 11 C -0.095 4.095 12 C -0.226 4.226 13 C 0.171 3.829 14 N -0.681 5.681 15 C 0.699 3.301 16 O -0.572 6.572 17 N -0.738 5.738 18 C 0.147 3.853 19 H 0.115 0.885 20 C -0.140 4.140 21 C 0.058 3.942 22 H 0.065 0.935 23 N -0.838 5.838 24 C -0.143 4.143 25 C -0.245 4.245 26 H 0.279 0.721 27 H 0.119 0.881 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.395 0.605 31 H 0.394 0.606 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.341 0.659 35 H 0.340 0.660 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.926 -17.601 2.610 18.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.495 4.495 8 H 0.095 0.905 9 C 0.120 3.880 10 C -0.189 4.189 11 C -0.114 4.114 12 C -0.247 4.247 13 C 0.079 3.921 14 N -0.327 5.327 15 C 0.400 3.600 16 O -0.448 6.448 17 N -0.394 5.394 18 C 0.040 3.960 19 H 0.133 0.867 20 C -0.179 4.179 21 C -0.053 4.053 22 H 0.082 0.918 23 N -0.368 5.368 24 C -0.182 4.182 25 C -0.268 4.268 26 H 0.090 0.910 27 H 0.136 0.864 28 H 0.109 0.891 29 H 0.119 0.881 30 H 0.229 0.771 31 H 0.228 0.772 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.111 0.889 37 H 0.088 0.912 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.126 -16.664 2.591 16.998 hybrid contribution 0.435 -0.114 0.129 0.467 sum 2.561 -16.779 2.720 17.189 Atomic orbital electron populations 1.69848 1.07522 1.28961 1.35696 1.25887 0.94711 1.01211 0.92358 0.86285 0.80917 0.81131 0.78477 1.18488 1.19772 1.20096 1.19527 0.97659 0.90995 1.41302 0.90512 1.17360 0.91037 0.91290 0.88363 1.21356 0.99285 0.96846 1.01459 1.20577 0.98383 0.92817 0.99643 1.20318 1.01040 0.97279 1.06053 1.17229 0.96858 0.82072 0.95942 1.42634 1.08775 1.12529 1.68794 1.16026 0.85707 0.80330 0.77964 1.90935 1.13957 1.81349 1.58573 1.45087 1.09313 1.10023 1.74930 1.22077 0.94221 0.84382 0.95345 0.86707 1.23462 1.01470 0.95891 0.97035 1.22609 0.95334 0.93541 0.93862 0.91760 1.58833 1.46731 1.21366 1.09853 1.23582 1.03189 0.93973 0.97480 1.20677 1.05764 0.91353 1.08964 0.91011 0.86358 0.89121 0.88124 0.77104 0.77226 0.90955 0.88866 0.84639 0.84690 0.88948 0.91228 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.03 10.94 55.55 0.61 -20.43 16 2 C 0.08 1.93 5.16 -17.34 -0.09 1.84 16 3 Si 0.91 18.86 29.59 -169.99 -5.03 13.83 16 4 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 5 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.46 -12.44 9.05 -37.74 -0.34 -12.79 16 8 H 0.08 1.96 7.90 -52.49 -0.41 1.55 16 9 C 0.12 3.32 5.57 -106.85 -0.59 2.73 16 10 C -0.17 -4.56 8.69 -38.84 -0.34 -4.89 16 11 C -0.10 -2.38 10.02 -39.69 -0.40 -2.78 16 12 C -0.23 -5.56 8.66 -39.10 -0.34 -5.90 16 13 C 0.17 4.00 6.25 -83.76 -0.52 3.47 16 14 N -0.68 -12.59 5.34 -14.27 -0.08 -12.66 16 15 C 0.70 12.81 8.29 -86.92 -0.72 12.09 16 16 O -0.57 -13.01 13.69 5.29 0.07 -12.94 16 17 N -0.74 -9.55 5.36 -57.88 -0.31 -9.86 16 18 C 0.15 1.68 4.24 -67.12 -0.28 1.40 16 19 H 0.12 1.53 7.47 -51.93 -0.39 1.15 16 20 C -0.14 -1.16 7.62 -25.92 -0.20 -1.36 16 21 C 0.06 0.47 4.96 -66.91 -0.33 0.14 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 23 N -0.84 -5.84 9.57 -3.98 -0.04 -5.88 16 24 C -0.14 -1.49 7.68 -25.92 -0.20 -1.69 16 25 C -0.25 -6.08 9.70 -38.69 -0.38 -6.45 16 26 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 27 H 0.12 3.25 6.17 -52.49 -0.32 2.93 16 28 H 0.09 2.05 8.06 -52.49 -0.42 1.63 16 29 H 0.10 2.47 6.48 -52.49 -0.34 2.13 16 30 H 0.40 5.75 8.83 -40.82 -0.36 5.39 16 31 H 0.39 3.91 8.75 -40.82 -0.36 3.55 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.74 8.12 -51.93 -0.42 0.32 16 34 H 0.34 1.99 9.08 -39.29 -0.36 1.63 16 35 H 0.34 1.85 9.07 -39.29 -0.36 1.49 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 320.52 15.07 4.83 4.83 Total: -1.00 -32.00 320.52 -9.66 -41.67 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: -4.99 Total: 15.63 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -4.73 Total: -14.19 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: 0.18 Total: -48.83 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.07 Total: -12.94 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.00 -9.66 -41.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055834.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.323 kcal (2) G-P(sol) polarization free energy of solvation -32.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds