Wall clock time and date at job start Mon Mar 30 2020 01:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86791 * 120.00249 * 2 1 4 4 H 1.48500 * 109.47496 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47493 * 300.00412 * 3 2 1 6 6 H 1.48508 * 109.47069 * 60.00588 * 3 2 1 7 7 C 1.39939 * 119.99758 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99601 * 196.79726 * 7 2 1 9 9 C 1.41406 * 119.99959 * 16.78954 * 7 2 1 10 10 C 1.40777 * 120.21265 * 25.15401 * 9 7 2 11 11 C 1.37642 * 119.88633 * 180.02562 * 10 9 7 12 12 C 1.38531 * 120.31719 * 359.74634 * 11 10 9 13 13 C 1.39247 * 120.42957 * 0.51381 * 12 11 10 14 14 N 1.39960 * 119.94197 * 179.75743 * 13 12 11 15 15 C 1.34776 * 120.00470 * 325.51843 * 14 13 12 16 16 O 1.21582 * 119.99968 * 354.85450 * 15 14 13 17 17 N 1.34780 * 119.99861 * 174.84932 * 15 14 13 18 18 C 1.46500 * 119.99835 * 179.72248 * 17 15 14 19 19 H 1.09002 * 112.84791 * 24.08309 * 18 17 15 20 20 C 1.53778 * 113.61451 * 155.27550 * 18 17 15 21 21 C 1.53782 * 87.08065 * 139.98270 * 20 18 17 22 22 H 1.08997 * 113.60872 * 89.11564 * 21 20 18 23 23 N 1.46890 * 113.61544 * 220.01962 * 21 20 18 24 24 C 1.53777 * 113.61756 * 252.77569 * 18 17 15 25 25 C 1.38275 * 120.10745 * 359.48749 * 13 12 11 26 26 H 0.97002 * 120.00135 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.05623 * 0.04351 * 10 9 7 28 28 H 1.07995 * 119.83923 * 179.97438 * 11 10 9 29 29 H 1.07996 * 119.78371 * 180.27168 * 12 11 10 30 30 H 0.97005 * 119.99271 * 145.51571 * 14 13 12 31 31 H 0.97000 * 120.00065 * 0.02562 * 17 15 14 32 32 H 1.08999 * 113.61479 * 254.53457 * 20 18 17 33 33 H 1.09004 * 113.60950 * 25.34994 * 20 18 17 34 34 H 1.00902 * 111.00373 * 180.02562 * 23 21 20 35 35 H 1.00904 * 111.00182 * 303.95360 * 23 21 20 36 36 H 1.09000 * 113.61005 * 334.56975 * 24 18 17 37 37 H 1.09000 * 113.60948 * 105.46850 * 24 18 17 38 38 H 1.07998 * 120.15674 * 180.27841 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8836 2.3964 -1.2124 6 1 1.8837 2.3963 1.2126 7 6 2.0079 -1.2119 -0.0005 8 1 3.0533 -1.2320 0.2697 9 6 1.3460 -2.4103 -0.3548 10 6 0.2105 -2.3732 -1.1861 11 6 -0.4289 -3.5437 -1.5263 12 6 0.0427 -4.7595 -1.0588 13 6 1.1615 -4.8110 -0.2314 14 7 1.6261 -6.0445 0.2391 15 6 0.7519 -7.0303 0.5230 16 8 -0.4437 -6.8191 0.4602 17 7 1.2033 -8.2501 0.8763 18 6 0.2530 -9.3199 1.1908 19 1 -0.7208 -9.1716 0.7241 20 6 0.8256 -10.7323 0.9860 21 6 0.0896 -11.1324 2.2756 22 1 -0.9295 -11.4801 2.1066 23 7 0.8647 -12.0317 3.1406 24 6 0.1753 -9.6540 2.6898 25 6 1.8175 -3.6460 0.1214 26 1 -0.4850 0.8401 0.0004 27 1 -0.1581 -1.4281 -1.5565 28 1 -1.3002 -3.5144 -2.1637 29 1 -0.4631 -5.6730 -1.3347 30 1 2.5775 -6.1899 0.3609 31 1 2.1572 -8.4185 0.9267 32 1 0.4471 -11.2319 0.0942 33 1 1.9115 -10.7794 1.0688 34 1 0.3460 -12.2688 3.9730 35 1 1.1445 -12.8623 2.6405 36 1 1.0833 -9.4065 3.2398 37 1 -0.7282 -9.2829 3.1735 38 1 2.6879 -3.6855 0.7594 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580055834.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:06 Heat of formation + Delta-G solvation = -11.706483 kcal Electronic energy + Delta-G solvation = -20222.360946 eV Core-core repulsion = 17063.839203 eV Total energy + Delta-G solvation = -3158.521743 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.56527 -40.02293 -38.86363 -36.11537 -35.15163 -34.59508 -32.16384 -31.74787 -29.71120 -27.15893 -26.67858 -24.78248 -22.98232 -22.67108 -21.69797 -20.66680 -19.41939 -19.20178 -17.71564 -17.26248 -16.81859 -16.58132 -16.42651 -16.06895 -16.01435 -15.63027 -15.00524 -14.66494 -14.47460 -14.08736 -13.53899 -13.38314 -13.23684 -12.92858 -12.86558 -12.74134 -12.55853 -12.26193 -11.96020 -11.90958 -11.44677 -11.42574 -11.22403 -11.06733 -10.73536 -10.04265 -9.63996 -9.39600 -8.71667 -8.56987 -6.33721 0.96470 0.99273 1.41174 1.52823 1.57074 1.71537 2.17395 2.23878 2.78816 3.28133 3.57029 3.58096 3.74235 3.75269 3.93164 4.04865 4.42431 4.54587 4.69877 4.81480 4.83996 5.00283 5.03335 5.04885 5.08989 5.12785 5.17377 5.22777 5.35843 5.61580 5.77273 5.80989 6.07216 6.10733 6.20443 6.29259 6.39907 6.62197 6.70433 6.94918 7.00486 7.12381 7.59886 8.37044 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.043990 B = 0.003109 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.360814 B = 9004.793219 C = 9263.825298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.032 3.968 3 Si 0.986 3.014 4 H -0.255 1.255 5 H -0.265 1.265 6 H -0.268 1.268 7 C -0.495 4.495 8 H 0.081 0.919 9 C 0.095 3.905 10 C -0.197 4.197 11 C -0.097 4.097 12 C -0.238 4.238 13 C 0.182 3.818 14 N -0.673 5.673 15 C 0.696 3.304 16 O -0.619 6.619 17 N -0.714 5.714 18 C 0.131 3.869 19 H 0.093 0.907 20 C -0.122 4.122 21 C 0.070 3.930 22 H 0.072 0.928 23 N -0.842 5.842 24 C -0.144 4.144 25 C -0.256 4.256 26 H 0.287 0.713 27 H 0.104 0.896 28 H 0.108 0.892 29 H 0.101 0.899 30 H 0.416 0.584 31 H 0.412 0.588 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.349 0.651 35 H 0.352 0.648 36 H 0.089 0.911 37 H 0.056 0.944 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.450 -18.859 3.141 19.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.182 4.182 3 Si 0.807 3.193 4 H -0.178 1.178 5 H -0.190 1.190 6 H -0.193 1.193 7 C -0.525 4.525 8 H 0.099 0.901 9 C 0.093 3.907 10 C -0.217 4.217 11 C -0.116 4.116 12 C -0.260 4.260 13 C 0.088 3.912 14 N -0.321 5.321 15 C 0.397 3.603 16 O -0.499 6.499 17 N -0.370 5.370 18 C 0.025 3.975 19 H 0.111 0.889 20 C -0.160 4.160 21 C -0.042 4.042 22 H 0.090 0.910 23 N -0.374 5.374 24 C -0.184 4.184 25 C -0.278 4.278 26 H 0.098 0.902 27 H 0.122 0.878 28 H 0.126 0.874 29 H 0.119 0.881 30 H 0.253 0.747 31 H 0.249 0.751 32 H 0.103 0.897 33 H 0.122 0.878 34 H 0.162 0.838 35 H 0.166 0.834 36 H 0.108 0.892 37 H 0.075 0.925 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.704 -18.012 3.143 18.655 hybrid contribution -0.074 0.140 0.015 0.159 sum 3.631 -17.871 3.158 18.508 Atomic orbital electron populations 1.69913 1.09183 1.30481 1.35832 1.26826 0.95478 1.04738 0.91188 0.85104 0.79484 0.75964 0.78784 1.17806 1.18991 1.19285 1.19827 0.98073 0.91960 1.42609 0.90084 1.17750 0.91544 0.92635 0.88817 1.21299 1.00491 0.96801 1.03107 1.20794 0.98697 0.92594 0.99532 1.20439 1.01791 0.96984 1.06760 1.17224 0.95811 0.83593 0.94538 1.42419 1.10030 1.11149 1.68457 1.16217 0.84924 0.81399 0.77750 1.90907 1.16048 1.82341 1.60578 1.44928 1.10697 1.08282 1.73052 1.22295 0.93511 0.85443 0.96295 0.88861 1.23372 1.02014 0.92891 0.97737 1.22467 0.95968 0.92279 0.93509 0.90987 1.58766 1.46607 1.21908 1.10100 1.23562 1.02432 0.96048 0.96328 1.20837 1.06497 0.91142 1.09303 0.90194 0.87800 0.87406 0.88140 0.74672 0.75052 0.89673 0.87764 0.83814 0.83377 0.89225 0.92540 0.87191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.61 10.94 21.82 0.24 -44.37 16 2 C 0.03 1.65 5.16 85.25 0.44 2.09 16 3 Si 0.99 38.47 29.59 68.60 2.03 40.50 16 4 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 5 H -0.27 -9.96 7.11 99.48 0.71 -9.26 16 6 H -0.27 -10.06 7.11 99.48 0.71 -9.36 16 7 C -0.50 -26.89 9.05 23.46 0.21 -26.68 16 8 H 0.08 4.17 7.90 -2.91 -0.02 4.15 16 9 C 0.10 5.30 5.57 -21.31 -0.12 5.18 16 10 C -0.20 -10.93 8.69 22.75 0.20 -10.74 16 11 C -0.10 -4.99 10.02 22.20 0.22 -4.77 16 12 C -0.24 -11.89 8.66 22.58 0.20 -11.70 16 13 C 0.18 8.51 6.25 38.09 0.24 8.75 16 14 N -0.67 -24.17 5.34 -317.33 -1.69 -25.86 16 15 C 0.70 25.03 8.29 179.05 1.48 26.51 16 16 O -0.62 -28.41 13.69 -3.97 -0.05 -28.46 16 17 N -0.71 -17.33 5.36 -455.30 -2.44 -19.77 16 18 C 0.13 2.83 4.24 45.52 0.19 3.03 16 19 H 0.09 2.49 7.47 -2.39 -0.02 2.47 16 20 C -0.12 -1.69 7.62 31.12 0.24 -1.45 16 21 C 0.07 0.97 4.96 45.44 0.23 1.20 16 22 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 23 N -0.84 -9.42 9.57 -166.52 -1.59 -11.02 16 24 C -0.14 -2.83 7.68 31.12 0.24 -2.59 16 25 C -0.26 -12.73 9.70 22.85 0.22 -12.51 16 26 H 0.29 13.95 8.30 -92.71 -0.77 13.18 16 27 H 0.10 5.96 6.17 -2.91 -0.02 5.94 16 28 H 0.11 4.98 8.06 -2.91 -0.02 4.95 16 29 H 0.10 4.99 6.48 -2.91 -0.02 4.97 16 30 H 0.42 11.30 8.83 -92.70 -0.82 10.48 16 31 H 0.41 7.09 8.75 -92.71 -0.81 6.28 16 32 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 33 H 0.10 1.27 8.12 -2.38 -0.02 1.25 16 34 H 0.35 3.21 9.08 -89.69 -0.81 2.40 16 35 H 0.35 2.72 9.07 -89.69 -0.81 1.91 16 36 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.11 4.98 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -70.60 320.52 -1.65 -72.26 By element: Atomic # 1 Polarization: 42.52 SS G_CDS: -2.13 Total: 40.40 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: 3.99 Total: -23.66 kcal Atomic # 7 Polarization: -95.54 SS G_CDS: -5.49 Total: -101.03 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.05 Total: -28.46 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Total: -70.60 -1.65 -72.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055834.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.549 kcal (2) G-P(sol) polarization free energy of solvation -70.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds