Wall clock time and date at job start Mon Mar 30 2020 01:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86793 * 120.00293 * 2 1 4 4 H 1.48500 * 109.47013 * 269.99823 * 3 2 1 5 5 H 1.48502 * 109.47170 * 29.99572 * 3 2 1 6 6 H 1.48494 * 109.47386 * 149.99602 * 3 2 1 7 7 C 1.39932 * 119.99656 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99776 * 196.79209 * 7 2 1 9 9 C 1.41412 * 120.00452 * 16.79555 * 7 2 1 10 10 C 1.40771 * 120.20663 * 25.16271 * 9 7 2 11 11 C 1.37641 * 119.88390 * 180.02562 * 10 9 7 12 12 C 1.38537 * 120.32317 * 359.72927 * 11 10 9 13 13 C 1.39250 * 120.42238 * 0.54774 * 12 11 10 14 14 N 1.39956 * 119.94303 * 179.72234 * 13 12 11 15 15 C 1.34770 * 119.99978 * 325.51535 * 14 13 12 16 16 O 1.21584 * 120.00281 * 354.85213 * 15 14 13 17 17 N 1.34778 * 120.00094 * 174.85089 * 15 14 13 18 18 C 1.46497 * 120.00555 * 180.02562 * 17 15 14 19 19 H 1.08998 * 112.84553 * 23.80338 * 18 17 15 20 20 C 1.53774 * 113.61666 * 154.99946 * 18 17 15 21 21 C 1.53784 * 87.08240 * 139.98164 * 20 18 17 22 22 H 1.08998 * 113.61671 * 220.02002 * 21 20 18 23 23 N 1.46902 * 113.61167 * 89.11441 * 21 20 18 24 24 C 1.53783 * 113.61310 * 252.50120 * 18 17 15 25 25 C 1.38272 * 120.10682 * 359.45503 * 13 12 11 26 26 H 0.96995 * 119.99762 * 0.02562 * 1 2 3 27 27 H 1.08009 * 120.05870 * 0.02562 * 10 9 7 28 28 H 1.08004 * 119.84003 * 180.02562 * 11 10 9 29 29 H 1.07993 * 119.78946 * 180.27192 * 12 11 10 30 30 H 0.96998 * 119.99799 * 145.52062 * 14 13 12 31 31 H 0.97006 * 119.99927 * 0.02562 * 17 15 14 32 32 H 1.09002 * 113.61859 * 254.52800 * 20 18 17 33 33 H 1.09002 * 113.61551 * 25.43403 * 20 18 17 34 34 H 1.00901 * 110.99942 * 180.02562 * 23 21 20 35 35 H 1.00894 * 111.00150 * 303.95270 * 23 21 20 36 36 H 1.08998 * 113.61485 * 334.56297 * 24 18 17 37 37 H 1.09000 * 113.61548 * 105.47272 * 24 18 17 38 38 H 1.08000 * 120.15955 * 180.25038 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.4899 2.0463 -1.4001 5 1 1.4398 2.6527 0.7000 6 1 3.5398 1.4401 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0534 -1.2317 0.2708 9 6 1.3461 -2.4106 -0.3528 10 6 0.2108 -2.3743 -1.1843 11 6 -0.4285 -3.5450 -1.5236 12 6 0.0430 -4.7605 -1.0553 13 6 1.1615 -4.8113 -0.2273 14 7 1.6258 -6.0443 0.2448 15 6 0.7513 -7.0295 0.5293 16 8 -0.4443 -6.8183 0.4658 17 7 1.2022 -8.2490 0.8842 18 6 0.2517 -9.3202 1.1930 19 1 -0.7213 -9.1704 0.7252 20 6 0.8250 -10.7317 0.9838 21 6 0.0869 -11.1369 2.2707 22 1 0.6611 -11.8065 2.9110 23 7 -1.2861 -11.6050 2.0389 24 6 0.1716 -9.6599 2.6907 25 6 1.8173 -3.6460 0.1247 26 1 -0.4849 0.8400 -0.0004 27 1 -0.1579 -1.4293 -1.5555 28 1 -1.2992 -3.5163 -2.1620 29 1 -0.4626 -5.6742 -1.3305 30 1 2.5770 -6.1897 0.3673 31 1 2.1561 -8.4175 0.9352 32 1 0.4481 -11.2281 0.0896 33 1 1.9106 -10.7792 1.0697 34 1 -1.7328 -11.8595 2.9072 35 1 -1.8263 -10.9107 1.5448 36 1 1.0785 -9.4144 3.2432 37 1 -0.7329 -9.2910 3.1743 38 1 2.6873 -3.6847 0.7635 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580055835.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:10 Heat of formation + Delta-G solvation = 11.566750 kcal Electronic energy + Delta-G solvation = -20309.935734 eV Core-core repulsion = 17152.423194 eV Total energy + Delta-G solvation = -3157.512540 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.35298 -39.04470 -37.17406 -34.38329 -33.85962 -32.93884 -30.87828 -29.79143 -27.96694 -25.92624 -25.20125 -24.13475 -21.62424 -20.89072 -20.16702 -19.47370 -17.94042 -17.63783 -16.96344 -15.56829 -15.48929 -15.20357 -15.06974 -14.48156 -14.41256 -14.16705 -13.57251 -13.05620 -12.98541 -12.86544 -12.67885 -12.20597 -11.99177 -11.63884 -11.23535 -11.15646 -11.00080 -10.88108 -10.65246 -10.47075 -10.19501 -9.59243 -9.53330 -9.20263 -9.10536 -8.93248 -8.82912 -7.42667 -6.86861 -6.68786 -4.33204 2.77797 2.85229 3.03699 3.09388 3.12453 3.25065 3.67561 3.95801 4.10774 4.24452 4.47511 4.56099 4.68738 4.72658 4.85681 5.37594 5.42230 5.56773 5.71424 5.72039 5.77354 5.95385 6.31328 6.56943 6.61450 6.76290 6.82218 6.90395 6.97511 7.07163 7.10286 7.26979 7.40675 7.66029 7.84563 8.06307 8.12026 8.28172 8.44431 8.65929 8.91218 8.95009 9.05811 10.24124 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.044914 B = 0.003158 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.260872 B = 8863.920114 C = 9049.561906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.466 4.466 8 H 0.077 0.923 9 C 0.123 3.877 10 C -0.169 4.169 11 C -0.095 4.095 12 C -0.226 4.226 13 C 0.170 3.830 14 N -0.681 5.681 15 C 0.698 3.302 16 O -0.572 6.572 17 N -0.740 5.740 18 C 0.145 3.855 19 H 0.113 0.887 20 C -0.143 4.143 21 C 0.073 3.927 22 H 0.093 0.907 23 N -0.831 5.831 24 C -0.193 4.193 25 C -0.246 4.246 26 H 0.280 0.720 27 H 0.119 0.881 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.395 0.605 31 H 0.393 0.607 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.345 0.655 35 H 0.345 0.655 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.086 -15.972 3.371 16.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.496 4.496 8 H 0.095 0.905 9 C 0.120 3.880 10 C -0.189 4.189 11 C -0.114 4.114 12 C -0.247 4.247 13 C 0.078 3.922 14 N -0.327 5.327 15 C 0.399 3.601 16 O -0.448 6.448 17 N -0.395 5.395 18 C 0.039 3.961 19 H 0.131 0.869 20 C -0.182 4.182 21 C -0.040 4.040 22 H 0.111 0.889 23 N -0.360 5.360 24 C -0.234 4.234 25 C -0.268 4.268 26 H 0.091 0.909 27 H 0.137 0.863 28 H 0.109 0.891 29 H 0.119 0.881 30 H 0.229 0.771 31 H 0.227 0.773 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.158 0.842 35 H 0.159 0.841 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.090 -16.230 2.885 16.617 hybrid contribution 1.000 1.510 0.870 2.009 sum 3.089 -14.721 3.755 15.503 Atomic orbital electron populations 1.69840 1.07517 1.29085 1.35577 1.25885 0.94720 1.01207 0.92343 0.86313 0.80400 0.80719 0.79243 1.19316 1.20391 1.18732 1.19507 0.97659 0.90997 1.41395 0.90534 1.17355 0.91042 0.91273 0.88344 1.21362 0.99265 0.96853 1.01414 1.20584 0.98396 0.92807 0.99625 1.20321 1.01039 0.97295 1.06031 1.17231 0.96900 0.82067 0.95988 1.42631 1.08752 1.12604 1.68710 1.16042 0.85728 0.80357 0.77965 1.90934 1.13975 1.81338 1.58561 1.45132 1.09306 1.10041 1.75045 1.22311 0.94322 0.84655 0.94821 0.86944 1.23499 1.00488 0.95200 0.98970 1.22289 0.90969 0.93689 0.97054 0.88896 1.58692 1.03017 1.47167 1.27134 1.24363 1.03145 0.97913 0.97999 1.20671 1.05773 0.91359 1.08984 0.90936 0.86333 0.89091 0.88126 0.77126 0.77295 0.90034 0.89225 0.84222 0.84119 0.89450 0.91222 0.88804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.94 10.94 55.55 0.61 -20.33 16 2 C 0.08 1.92 5.16 -17.34 -0.09 1.84 16 3 Si 0.91 18.78 29.59 -169.99 -5.03 13.75 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.47 -12.40 9.05 -37.74 -0.34 -12.75 16 8 H 0.08 1.94 7.90 -52.48 -0.41 1.53 16 9 C 0.12 3.32 5.57 -106.85 -0.59 2.72 16 10 C -0.17 -4.52 8.69 -38.84 -0.34 -4.86 16 11 C -0.10 -2.37 10.02 -39.69 -0.40 -2.77 16 12 C -0.23 -5.54 8.66 -39.10 -0.34 -5.87 16 13 C 0.17 3.95 6.25 -83.76 -0.52 3.43 16 14 N -0.68 -12.44 5.34 -14.27 -0.08 -12.51 16 15 C 0.70 12.64 8.29 -86.92 -0.72 11.92 16 16 O -0.57 -12.90 13.69 5.29 0.07 -12.83 16 17 N -0.74 -9.29 5.36 -57.89 -0.31 -9.60 16 18 C 0.15 1.62 3.90 -67.12 -0.26 1.36 16 19 H 0.11 1.50 7.04 -51.93 -0.37 1.13 16 20 C -0.14 -1.18 7.63 -25.92 -0.20 -1.38 16 21 C 0.07 0.57 5.18 -66.89 -0.35 0.23 16 22 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 23 N -0.83 -6.51 9.64 -3.97 -0.04 -6.55 16 24 C -0.19 -1.83 7.59 -25.92 -0.20 -2.02 16 25 C -0.25 -6.05 9.70 -38.69 -0.38 -6.42 16 26 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 27 H 0.12 3.24 6.17 -52.48 -0.32 2.92 16 28 H 0.09 2.05 8.06 -52.48 -0.42 1.63 16 29 H 0.10 2.46 6.48 -52.49 -0.34 2.12 16 30 H 0.40 5.64 8.83 -40.82 -0.36 5.28 16 31 H 0.39 3.66 8.75 -40.82 -0.36 3.31 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.61 8.12 -51.93 -0.42 0.19 16 34 H 0.34 2.16 9.08 -39.29 -0.36 1.81 16 35 H 0.35 2.81 8.15 -39.29 -0.32 2.49 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 319.03 15.07 4.81 4.81 Total: -1.00 -31.84 319.03 -9.62 -41.46 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: -4.93 Total: 16.39 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -4.72 Total: -14.58 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 0.18 Total: -49.00 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.07 Total: -12.83 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.84 -9.62 -41.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055835.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.030 kcal (2) G-P(sol) polarization free energy of solvation -31.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds