Wall clock time and date at job start Mon Mar 30 2020 01:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86793 * 120.00293 * 2 1 4 4 H 1.48500 * 109.47013 * 269.99823 * 3 2 1 5 5 H 1.48502 * 109.47170 * 29.99572 * 3 2 1 6 6 H 1.48494 * 109.47386 * 149.99602 * 3 2 1 7 7 C 1.39932 * 119.99656 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99776 * 196.79209 * 7 2 1 9 9 C 1.41412 * 120.00452 * 16.79555 * 7 2 1 10 10 C 1.40771 * 120.20663 * 25.16271 * 9 7 2 11 11 C 1.37641 * 119.88390 * 180.02562 * 10 9 7 12 12 C 1.38537 * 120.32317 * 359.72927 * 11 10 9 13 13 C 1.39250 * 120.42238 * 0.54774 * 12 11 10 14 14 N 1.39956 * 119.94303 * 179.72234 * 13 12 11 15 15 C 1.34770 * 119.99978 * 325.51535 * 14 13 12 16 16 O 1.21584 * 120.00281 * 354.85213 * 15 14 13 17 17 N 1.34778 * 120.00094 * 174.85089 * 15 14 13 18 18 C 1.46497 * 120.00555 * 180.02562 * 17 15 14 19 19 H 1.08998 * 112.84553 * 23.80338 * 18 17 15 20 20 C 1.53774 * 113.61666 * 154.99946 * 18 17 15 21 21 C 1.53784 * 87.08240 * 139.98164 * 20 18 17 22 22 H 1.08998 * 113.61671 * 220.02002 * 21 20 18 23 23 N 1.46902 * 113.61167 * 89.11441 * 21 20 18 24 24 C 1.53783 * 113.61310 * 252.50120 * 18 17 15 25 25 C 1.38272 * 120.10682 * 359.45503 * 13 12 11 26 26 H 0.96995 * 119.99762 * 0.02562 * 1 2 3 27 27 H 1.08009 * 120.05870 * 0.02562 * 10 9 7 28 28 H 1.08004 * 119.84003 * 180.02562 * 11 10 9 29 29 H 1.07993 * 119.78946 * 180.27192 * 12 11 10 30 30 H 0.96998 * 119.99799 * 145.52062 * 14 13 12 31 31 H 0.97006 * 119.99927 * 0.02562 * 17 15 14 32 32 H 1.09002 * 113.61859 * 254.52800 * 20 18 17 33 33 H 1.09002 * 113.61551 * 25.43403 * 20 18 17 34 34 H 1.00901 * 110.99942 * 180.02562 * 23 21 20 35 35 H 1.00894 * 111.00150 * 303.95270 * 23 21 20 36 36 H 1.08998 * 113.61485 * 334.56297 * 24 18 17 37 37 H 1.09000 * 113.61548 * 105.47272 * 24 18 17 38 38 H 1.08000 * 120.15955 * 180.25038 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.4899 2.0463 -1.4001 5 1 1.4398 2.6527 0.7000 6 1 3.5398 1.4401 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0534 -1.2317 0.2708 9 6 1.3461 -2.4106 -0.3528 10 6 0.2108 -2.3743 -1.1843 11 6 -0.4285 -3.5450 -1.5236 12 6 0.0430 -4.7605 -1.0553 13 6 1.1615 -4.8113 -0.2273 14 7 1.6258 -6.0443 0.2448 15 6 0.7513 -7.0295 0.5293 16 8 -0.4443 -6.8183 0.4658 17 7 1.2022 -8.2490 0.8842 18 6 0.2517 -9.3202 1.1930 19 1 -0.7213 -9.1704 0.7252 20 6 0.8250 -10.7317 0.9838 21 6 0.0869 -11.1369 2.2707 22 1 0.6611 -11.8065 2.9110 23 7 -1.2861 -11.6050 2.0389 24 6 0.1716 -9.6599 2.6907 25 6 1.8173 -3.6460 0.1247 26 1 -0.4849 0.8400 -0.0004 27 1 -0.1579 -1.4293 -1.5555 28 1 -1.2992 -3.5163 -2.1620 29 1 -0.4626 -5.6742 -1.3305 30 1 2.5770 -6.1897 0.3673 31 1 2.1561 -8.4175 0.9352 32 1 0.4481 -11.2281 0.0896 33 1 1.9106 -10.7792 1.0697 34 1 -1.7328 -11.8595 2.9072 35 1 -1.8263 -10.9107 1.5448 36 1 1.0785 -9.4144 3.2432 37 1 -0.7329 -9.2910 3.1743 38 1 2.6873 -3.6847 0.7635 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580055835.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:09 Heat of formation + Delta-G solvation = -11.678097 kcal Electronic energy + Delta-G solvation = -20310.943706 eV Core-core repulsion = 17152.423194 eV Total energy + Delta-G solvation = -3158.520512 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.61781 -40.18643 -38.91836 -36.13112 -35.17833 -34.58073 -31.77525 -31.73094 -29.70878 -27.17072 -26.64739 -25.14910 -23.17262 -22.76269 -21.74030 -20.41366 -19.45997 -19.18105 -17.98330 -17.34137 -16.77126 -16.65297 -16.24497 -16.07000 -15.74092 -15.48108 -14.91980 -14.66105 -14.37067 -14.07316 -13.77760 -13.52232 -13.47451 -12.98424 -12.91488 -12.78027 -12.69692 -12.27302 -11.94371 -11.84365 -11.46245 -11.40551 -11.23965 -11.07977 -10.74741 -10.07599 -9.63645 -9.41091 -8.73022 -8.58097 -6.35021 0.95054 0.98200 1.40476 1.53842 1.54289 1.70973 2.15512 2.22962 2.77751 3.29955 3.47078 3.51239 3.72633 3.75388 3.94555 4.11305 4.41099 4.59869 4.68741 4.75663 4.84516 4.96064 5.01947 5.03934 5.06464 5.12226 5.17326 5.21121 5.34477 5.56124 5.75726 5.78908 6.05439 6.09360 6.17958 6.21215 6.38399 6.52616 6.69084 6.93683 6.99206 7.11115 7.58080 8.36007 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.044914 B = 0.003158 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.260872 B = 8863.920114 C = 9049.561906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.033 3.967 3 Si 0.987 3.013 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.496 4.496 8 H 0.082 0.918 9 C 0.096 3.904 10 C -0.197 4.197 11 C -0.098 4.098 12 C -0.239 4.239 13 C 0.182 3.818 14 N -0.672 5.672 15 C 0.695 3.305 16 O -0.620 6.620 17 N -0.715 5.715 18 C 0.128 3.872 19 H 0.086 0.914 20 C -0.128 4.128 21 C 0.083 3.917 22 H 0.114 0.886 23 N -0.837 5.837 24 C -0.188 4.188 25 C -0.255 4.255 26 H 0.288 0.712 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.416 0.584 31 H 0.413 0.587 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.353 0.647 35 H 0.341 0.659 36 H 0.098 0.902 37 H 0.054 0.946 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.893 -17.106 4.234 18.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.182 4.182 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.179 1.179 7 C -0.525 4.525 8 H 0.100 0.900 9 C 0.093 3.907 10 C -0.217 4.217 11 C -0.116 4.116 12 C -0.260 4.260 13 C 0.088 3.912 14 N -0.320 5.320 15 C 0.396 3.604 16 O -0.500 6.500 17 N -0.371 5.371 18 C 0.022 3.978 19 H 0.104 0.896 20 C -0.166 4.166 21 C -0.031 4.031 22 H 0.132 0.868 23 N -0.366 5.366 24 C -0.229 4.229 25 C -0.277 4.277 26 H 0.098 0.902 27 H 0.122 0.878 28 H 0.126 0.874 29 H 0.118 0.882 30 H 0.254 0.746 31 H 0.251 0.749 32 H 0.096 0.904 33 H 0.132 0.868 34 H 0.168 0.832 35 H 0.154 0.846 36 H 0.116 0.884 37 H 0.073 0.927 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.947 -17.450 3.772 18.284 hybrid contribution 0.389 1.722 0.630 1.875 sum 4.336 -15.728 4.402 16.898 Atomic orbital electron populations 1.69909 1.09186 1.30551 1.35750 1.26825 0.95475 1.04732 0.91166 0.85139 0.79015 0.75629 0.79507 1.18647 1.19555 1.17903 1.19816 0.98106 0.91944 1.42668 0.90030 1.17745 0.91526 0.92640 0.88781 1.21303 1.00495 0.96780 1.03087 1.20796 0.98706 0.92612 0.99532 1.20436 1.01847 0.96954 1.06807 1.17224 0.95813 0.83646 0.94545 1.42409 1.10027 1.11196 1.68375 1.16253 0.84934 0.81484 0.77766 1.90907 1.16130 1.82361 1.60589 1.44967 1.10774 1.08189 1.73133 1.22548 0.93370 0.85519 0.96319 0.89636 1.23485 1.01876 0.92222 0.99064 1.22299 0.91098 0.92844 0.96816 0.86849 1.58729 1.03278 1.46915 1.27721 1.24356 1.02976 0.99163 0.96395 1.20834 1.06506 0.91113 1.09296 0.90181 0.87790 0.87448 0.88244 0.74640 0.74932 0.90442 0.86782 0.83230 0.84558 0.88384 0.92688 0.87131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.43 10.94 21.82 0.24 -44.19 16 2 C 0.03 1.66 5.16 85.25 0.44 2.10 16 3 Si 0.99 38.24 29.59 68.60 2.03 40.27 16 4 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 5 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 6 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 7 C -0.50 -26.76 9.05 23.46 0.21 -26.54 16 8 H 0.08 4.16 7.90 -2.91 -0.02 4.14 16 9 C 0.10 5.30 5.57 -21.31 -0.12 5.18 16 10 C -0.20 -10.88 8.69 22.75 0.20 -10.68 16 11 C -0.10 -5.00 10.02 22.20 0.22 -4.77 16 12 C -0.24 -11.91 8.66 22.58 0.20 -11.71 16 13 C 0.18 8.43 6.25 38.10 0.24 8.66 16 14 N -0.67 -23.78 5.34 -317.34 -1.69 -25.48 16 15 C 0.69 24.61 8.29 179.06 1.48 26.10 16 16 O -0.62 -28.28 13.69 -3.98 -0.05 -28.34 16 17 N -0.71 -16.63 5.36 -455.32 -2.44 -19.07 16 18 C 0.13 2.68 3.90 45.52 0.18 2.85 16 19 H 0.09 2.30 7.04 -2.39 -0.02 2.29 16 20 C -0.13 -1.76 7.63 31.12 0.24 -1.53 16 21 C 0.08 1.08 5.18 45.44 0.24 1.32 16 22 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 23 N -0.84 -11.81 9.64 -166.48 -1.60 -13.41 16 24 C -0.19 -3.20 7.59 31.12 0.24 -2.97 16 25 C -0.26 -12.61 9.70 22.85 0.22 -12.39 16 26 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 27 H 0.10 5.94 6.17 -2.91 -0.02 5.93 16 28 H 0.11 4.96 8.06 -2.91 -0.02 4.93 16 29 H 0.10 4.95 6.48 -2.91 -0.02 4.93 16 30 H 0.42 11.00 8.83 -92.71 -0.82 10.18 16 31 H 0.41 6.41 8.75 -92.70 -0.81 5.59 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.11 1.06 8.12 -2.39 -0.02 1.04 16 34 H 0.35 3.87 9.08 -89.69 -0.81 3.06 16 35 H 0.34 5.37 8.15 -89.70 -0.73 4.64 16 36 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -70.62 319.03 -1.59 -72.21 By element: Atomic # 1 Polarization: 44.42 SS G_CDS: -2.04 Total: 42.37 kcal Atomic # 6 Polarization: -28.36 SS G_CDS: 3.98 Total: -24.38 kcal Atomic # 7 Polarization: -96.65 SS G_CDS: -5.50 Total: -102.15 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.05 Total: -28.34 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.27 kcal Total: -70.62 -1.59 -72.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055835.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.535 kcal (2) G-P(sol) polarization free energy of solvation -70.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds