Wall clock time and date at job start Mon Mar 30 2020 02:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86796 * 120.00161 * 2 1 4 4 H 1.48503 * 109.46969 * 269.99689 * 3 2 1 5 5 H 1.48495 * 109.47333 * 29.99427 * 3 2 1 6 6 H 1.48503 * 109.47632 * 149.99681 * 3 2 1 7 7 C 1.40036 * 119.99883 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99587 * 189.84895 * 7 2 1 9 9 C 1.41543 * 120.00023 * 9.85082 * 7 2 1 10 10 C 1.41165 * 120.99753 * 206.23738 * 9 7 2 11 11 C 1.37592 * 119.01747 * 180.02562 * 10 9 7 12 12 N 1.32074 * 121.10520 * 359.97438 * 11 10 9 13 13 C 1.32470 * 122.23599 * 359.97438 * 12 11 10 14 14 N 1.39471 * 119.58380 * 179.97438 * 13 12 11 15 15 C 1.34777 * 119.99692 * 354.67842 * 14 13 12 16 16 O 1.21277 * 120.00156 * 354.91000 * 15 14 13 17 17 C 1.50699 * 120.00013 * 174.91705 * 15 14 13 18 18 H 1.09004 * 109.46970 * 39.99676 * 17 15 14 19 19 N 1.46901 * 109.47150 * 159.99323 * 17 15 14 20 20 C 1.52996 * 109.47115 * 279.99652 * 17 15 14 21 21 C 1.52999 * 109.47160 * 174.99848 * 20 17 15 22 22 C 1.53005 * 117.50091 * 243.74794 * 21 20 17 23 23 C 1.53007 * 117.50021 * 175.08702 * 21 20 17 24 24 C 1.38592 * 120.83732 * 0.02562 * 13 12 11 25 25 H 0.97003 * 119.99777 * 0.02562 * 1 2 3 26 26 H 1.08009 * 120.49309 * 359.97438 * 10 9 7 27 27 H 1.07999 * 119.44534 * 179.97438 * 11 10 9 28 28 H 0.96993 * 119.99977 * 174.67080 * 14 13 12 29 29 H 1.00895 * 111.00012 * 60.00409 * 19 17 15 30 30 H 1.00904 * 111.00233 * 183.95158 * 19 17 15 31 31 H 1.08999 * 109.47242 * 294.99895 * 20 17 15 32 32 H 1.08998 * 109.47514 * 54.99721 * 20 17 15 33 33 H 1.09004 * 115.55238 * 29.41526 * 21 20 17 34 34 H 1.09002 * 117.49447 * 359.97438 * 22 21 20 35 35 H 1.09000 * 117.49846 * 145.02003 * 22 21 20 36 36 H 1.09002 * 117.49603 * 214.97841 * 23 21 20 37 37 H 1.08996 * 117.49667 * 359.97438 * 23 21 20 38 38 H 1.08008 * 120.59977 * 179.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0463 -1.4001 5 1 1.4389 2.6527 0.6999 6 1 3.5390 1.4402 0.7001 7 6 2.0075 -1.2128 0.0005 8 1 3.0756 -1.2195 0.1605 9 6 1.3154 -2.4296 -0.2086 10 6 1.8137 -3.6468 0.3041 11 6 1.1081 -4.8058 0.0761 12 7 -0.0203 -4.7938 -0.6102 13 6 -0.5306 -3.6788 -1.1114 14 7 -1.7260 -3.7301 -1.8282 15 6 -2.2985 -4.9197 -2.0994 16 8 -1.7294 -5.9485 -1.8020 17 6 -3.6459 -4.9715 -2.7725 18 1 -3.6955 -4.2046 -3.5455 19 7 -3.8383 -6.2942 -3.3818 20 6 -4.7435 -4.7227 -1.7361 21 6 -6.1011 -4.6512 -2.4382 22 6 -6.8593 -3.3237 -2.3767 23 6 -7.3458 -4.5221 -1.5579 24 6 0.1087 -2.4621 -0.9335 25 1 -0.4850 0.8401 -0.0004 26 1 2.7357 -3.6681 0.8664 27 1 1.4832 -5.7410 0.4648 28 1 -2.1453 -2.9097 -2.1313 29 1 -3.7966 -7.0228 -2.6851 30 1 -4.7067 -6.3334 -3.8943 31 1 -4.7513 -5.5376 -1.0123 32 1 -4.5507 -3.7815 -1.2213 33 1 -6.1895 -5.2394 -3.3517 34 1 -6.3911 -2.5014 -1.8356 35 1 -7.4467 -3.0387 -3.2495 36 1 -8.2532 -5.0249 -1.8924 37 1 -7.1976 -4.4884 -0.4785 38 1 -0.3107 -1.5555 -1.3442 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580055871.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:14 Heat of formation + Delta-G solvation = 20.477178 kcal Electronic energy + Delta-G solvation = -20609.628586 eV Core-core repulsion = 17452.502431 eV Total energy + Delta-G solvation = -3157.126155 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.79942 -38.30103 -37.43856 -34.57495 -34.14311 -33.70554 -30.53220 -29.17244 -28.24124 -26.00238 -24.70886 -22.59444 -21.96111 -21.30946 -20.51203 -19.51206 -17.68630 -17.29931 -16.17059 -15.98627 -15.31170 -14.82970 -14.67933 -14.23979 -14.19174 -14.08939 -13.81628 -13.30982 -12.97048 -12.73333 -12.60247 -12.23719 -11.84643 -11.65993 -11.50842 -11.41121 -11.22155 -10.91455 -10.56960 -10.27192 -10.14996 -10.12997 -9.72102 -9.40859 -9.33521 -8.68820 -7.98482 -7.71740 -7.03378 -6.74877 -4.63538 2.55514 2.79001 3.01266 3.04709 3.19378 3.43386 3.53918 3.60890 3.84943 4.43499 4.60043 4.68660 4.70177 4.77898 4.91377 5.13394 5.19079 5.35970 5.42398 5.62119 5.68514 5.69044 5.84158 5.90785 6.00474 6.07747 6.58427 6.65148 6.79893 6.94867 7.05073 7.12878 7.38869 7.43724 7.47881 7.79482 7.96056 8.22278 8.43408 8.70584 8.75284 8.92158 9.68789 10.09012 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019160 B = 0.004430 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.993471 B = 6318.928667 C = 7456.522023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.076 3.924 3 Si 0.915 3.085 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.455 4.455 8 H 0.081 0.919 9 C 0.142 3.858 10 C -0.282 4.282 11 C 0.117 3.883 12 N -0.553 5.553 13 C 0.336 3.664 14 N -0.658 5.658 15 C 0.505 3.495 16 O -0.473 6.473 17 C 0.080 3.920 18 H 0.100 0.900 19 N -0.826 5.826 20 C -0.119 4.119 21 C -0.154 4.154 22 C -0.178 4.178 23 C -0.181 4.181 24 C -0.239 4.239 25 H 0.280 0.720 26 H 0.102 0.898 27 H 0.124 0.876 28 H 0.407 0.593 29 H 0.351 0.649 30 H 0.341 0.659 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.098 -1.830 -4.510 13.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.142 4.142 3 Si 0.739 3.261 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.486 4.486 8 H 0.099 0.901 9 C 0.133 3.867 10 C -0.306 4.306 11 C -0.037 4.037 12 N -0.272 5.272 13 C 0.111 3.889 14 N -0.305 5.305 15 C 0.289 3.711 16 O -0.342 6.342 17 C -0.036 4.036 18 H 0.117 0.883 19 N -0.358 5.358 20 C -0.159 4.159 21 C -0.172 4.172 22 C -0.215 4.215 23 C -0.218 4.218 24 C -0.264 4.264 25 H 0.092 0.908 26 H 0.120 0.880 27 H 0.141 0.859 28 H 0.242 0.758 29 H 0.166 0.834 30 H 0.155 0.845 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.122 0.878 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.724 -3.124 -4.853 13.068 hybrid contribution -0.352 2.088 0.680 2.224 sum -12.076 -1.036 -4.173 12.819 Atomic orbital electron populations 1.69740 1.07578 1.29136 1.35818 1.25940 0.94874 1.01427 0.91980 0.86200 0.80382 0.80153 0.79342 1.19228 1.20214 1.18532 1.19595 0.95867 0.90014 1.43155 0.90058 1.17586 0.90391 0.92264 0.86418 1.21931 1.04123 0.94431 1.10142 1.21757 0.90655 0.96529 0.94790 1.67179 1.14964 1.28046 1.17025 1.18213 0.86516 0.90888 0.93259 1.43436 1.23206 1.08968 1.54855 1.20407 0.86753 0.84105 0.79876 1.90755 1.62694 1.32608 1.48127 1.21325 0.92070 0.93910 0.96259 0.88252 1.58559 1.41738 1.03280 1.32201 1.21910 0.92346 1.03598 0.98062 1.22285 0.92405 1.01365 1.01188 1.23079 1.03853 0.91919 1.02646 1.22976 0.97726 1.02652 0.98404 1.21682 1.00900 0.95601 1.08261 0.90849 0.87970 0.85895 0.75842 0.83411 0.84455 0.90837 0.90517 0.87815 0.88454 0.88830 0.88885 0.88726 0.84932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.48 10.70 55.55 0.59 -18.89 16 2 C 0.08 1.82 5.31 -17.34 -0.09 1.73 16 3 Si 0.91 17.94 29.57 -169.99 -5.03 12.91 16 4 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.45 -11.71 9.14 -37.65 -0.34 -12.06 16 8 H 0.08 2.01 7.87 -52.49 -0.41 1.59 16 9 C 0.14 3.74 5.60 -106.55 -0.60 3.15 16 10 C -0.28 -6.99 9.90 -38.71 -0.38 -7.37 16 11 C 0.12 2.85 11.15 -17.68 -0.20 2.65 16 12 N -0.55 -14.26 7.89 -12.52 -0.10 -14.36 16 13 C 0.34 8.21 7.40 -154.70 -1.15 7.06 16 14 N -0.66 -12.94 5.39 -11.49 -0.06 -13.00 16 15 C 0.51 9.55 7.03 -10.99 -0.08 9.47 16 16 O -0.47 -10.97 14.54 5.56 0.08 -10.89 16 17 C 0.08 1.05 3.20 -68.87 -0.22 0.83 16 18 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 19 N -0.83 -10.28 8.95 -5.65 -0.05 -10.34 16 20 C -0.12 -1.36 5.12 -26.73 -0.14 -1.50 16 21 C -0.15 -1.39 5.59 -90.61 -0.51 -1.89 16 22 C -0.18 -1.52 10.18 -26.69 -0.27 -1.79 16 23 C -0.18 -1.53 10.26 -26.69 -0.27 -1.80 16 24 C -0.24 -6.08 8.61 -38.48 -0.33 -6.41 16 25 H 0.28 6.21 8.29 -40.82 -0.34 5.87 16 26 H 0.10 2.31 8.06 -52.48 -0.42 1.89 16 27 H 0.12 2.61 8.06 -52.49 -0.42 2.19 16 28 H 0.41 6.60 8.70 -40.82 -0.36 6.24 16 29 H 0.35 4.59 8.58 -39.29 -0.34 4.26 16 30 H 0.34 3.18 7.40 -39.29 -0.29 2.89 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 0.92 7.88 -51.93 -0.41 0.51 16 33 H 0.10 0.82 6.58 -51.93 -0.34 0.48 16 34 H 0.10 0.86 8.03 -51.93 -0.42 0.45 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.13 3.34 6.11 -52.48 -0.32 3.02 16 LS Contribution 323.10 15.07 4.87 4.87 Total: -1.00 -31.20 323.10 -9.25 -40.45 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: -4.98 Total: 17.18 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -4.58 Total: -7.93 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: 0.38 Total: -56.59 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.08 Total: -10.89 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.20 -9.25 -40.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055871.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.929 kcal (2) G-P(sol) polarization free energy of solvation -31.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds