Wall clock time and date at job start Mon Mar 30 2020 02:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86796 * 120.00161 * 2 1 4 4 H 1.48503 * 109.46969 * 269.99689 * 3 2 1 5 5 H 1.48495 * 109.47333 * 29.99427 * 3 2 1 6 6 H 1.48503 * 109.47632 * 149.99681 * 3 2 1 7 7 C 1.40036 * 119.99883 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99587 * 189.84895 * 7 2 1 9 9 C 1.41543 * 120.00023 * 9.85082 * 7 2 1 10 10 C 1.41165 * 120.99753 * 206.23738 * 9 7 2 11 11 C 1.37592 * 119.01747 * 180.02562 * 10 9 7 12 12 N 1.32074 * 121.10520 * 359.97438 * 11 10 9 13 13 C 1.32470 * 122.23599 * 359.97438 * 12 11 10 14 14 N 1.39471 * 119.58380 * 179.97438 * 13 12 11 15 15 C 1.34777 * 119.99692 * 354.67842 * 14 13 12 16 16 O 1.21277 * 120.00156 * 354.91000 * 15 14 13 17 17 C 1.50699 * 120.00013 * 174.91705 * 15 14 13 18 18 H 1.09004 * 109.46970 * 39.99676 * 17 15 14 19 19 N 1.46901 * 109.47150 * 159.99323 * 17 15 14 20 20 C 1.52996 * 109.47115 * 279.99652 * 17 15 14 21 21 C 1.52999 * 109.47160 * 174.99848 * 20 17 15 22 22 C 1.53005 * 117.50091 * 243.74794 * 21 20 17 23 23 C 1.53007 * 117.50021 * 175.08702 * 21 20 17 24 24 C 1.38592 * 120.83732 * 0.02562 * 13 12 11 25 25 H 0.97003 * 119.99777 * 0.02562 * 1 2 3 26 26 H 1.08009 * 120.49309 * 359.97438 * 10 9 7 27 27 H 1.07999 * 119.44534 * 179.97438 * 11 10 9 28 28 H 0.96993 * 119.99977 * 174.67080 * 14 13 12 29 29 H 1.00895 * 111.00012 * 60.00409 * 19 17 15 30 30 H 1.00904 * 111.00233 * 183.95158 * 19 17 15 31 31 H 1.08999 * 109.47242 * 294.99895 * 20 17 15 32 32 H 1.08998 * 109.47514 * 54.99721 * 20 17 15 33 33 H 1.09004 * 115.55238 * 29.41526 * 21 20 17 34 34 H 1.09002 * 117.49447 * 359.97438 * 22 21 20 35 35 H 1.09000 * 117.49846 * 145.02003 * 22 21 20 36 36 H 1.09002 * 117.49603 * 214.97841 * 23 21 20 37 37 H 1.08996 * 117.49667 * 359.97438 * 23 21 20 38 38 H 1.08008 * 120.59977 * 179.97438 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0463 -1.4001 5 1 1.4389 2.6527 0.6999 6 1 3.5390 1.4402 0.7001 7 6 2.0075 -1.2128 0.0005 8 1 3.0756 -1.2195 0.1605 9 6 1.3154 -2.4296 -0.2086 10 6 1.8137 -3.6468 0.3041 11 6 1.1081 -4.8058 0.0761 12 7 -0.0203 -4.7938 -0.6102 13 6 -0.5306 -3.6788 -1.1114 14 7 -1.7260 -3.7301 -1.8282 15 6 -2.2985 -4.9197 -2.0994 16 8 -1.7294 -5.9485 -1.8020 17 6 -3.6459 -4.9715 -2.7725 18 1 -3.6955 -4.2046 -3.5455 19 7 -3.8383 -6.2942 -3.3818 20 6 -4.7435 -4.7227 -1.7361 21 6 -6.1011 -4.6512 -2.4382 22 6 -6.8593 -3.3237 -2.3767 23 6 -7.3458 -4.5221 -1.5579 24 6 0.1087 -2.4621 -0.9335 25 1 -0.4850 0.8401 -0.0004 26 1 2.7357 -3.6681 0.8664 27 1 1.4832 -5.7410 0.4648 28 1 -2.1453 -2.9097 -2.1313 29 1 -3.7966 -7.0228 -2.6851 30 1 -4.7067 -6.3334 -3.8943 31 1 -4.7513 -5.5376 -1.0123 32 1 -4.5507 -3.7815 -1.2213 33 1 -6.1895 -5.2394 -3.3517 34 1 -6.3911 -2.5014 -1.8356 35 1 -7.4467 -3.0387 -3.2495 36 1 -8.2532 -5.0249 -1.8924 37 1 -7.1976 -4.4884 -0.4785 38 1 -0.3107 -1.5555 -1.3442 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580055871.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:13 Heat of formation + Delta-G solvation = 0.022006 kcal Electronic energy + Delta-G solvation = -20610.515588 eV Core-core repulsion = 17452.502431 eV Total energy + Delta-G solvation = -3158.013158 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.36676 -39.82820 -38.54623 -36.17816 -35.47915 -35.40647 -32.44950 -30.72774 -29.47153 -27.91909 -25.97254 -23.84400 -23.25241 -22.92999 -21.41609 -21.04179 -19.48695 -18.67332 -17.74555 -17.03935 -16.93657 -16.24865 -16.04209 -15.91888 -15.61677 -15.48530 -14.96449 -14.77878 -14.39162 -14.29602 -14.26159 -13.67080 -13.16274 -12.88830 -12.86710 -12.69935 -12.39761 -12.34952 -12.08644 -11.88585 -11.48475 -11.27605 -11.18615 -10.90292 -10.86696 -9.94405 -9.77811 -9.53802 -8.87884 -8.58353 -6.58794 0.73175 0.99683 1.41547 1.53626 1.55375 1.86697 2.09329 2.20703 2.82191 2.86566 3.47263 3.60103 3.74012 3.82426 3.94558 3.99775 4.18107 4.21232 4.29562 4.48987 4.73844 4.76615 4.81694 4.84553 4.89888 4.93117 5.05172 5.09117 5.24048 5.27005 5.30258 5.47458 5.64406 5.91476 6.02618 6.16450 6.48429 6.56714 6.60374 6.79015 6.83630 7.32214 7.82602 8.28921 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019160 B = 0.004430 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.993471 B = 6318.928667 C = 7456.522023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.038 3.962 3 Si 0.990 3.010 4 H -0.260 1.260 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.485 4.485 8 H 0.083 0.917 9 C 0.113 3.887 10 C -0.297 4.297 11 C 0.111 3.889 12 N -0.578 5.578 13 C 0.332 3.668 14 N -0.652 5.652 15 C 0.499 3.501 16 O -0.519 6.519 17 C 0.097 3.903 18 H 0.123 0.877 19 N -0.832 5.832 20 C -0.111 4.111 21 C -0.155 4.155 22 C -0.177 4.177 23 C -0.181 4.181 24 C -0.257 4.257 25 H 0.292 0.708 26 H 0.116 0.884 27 H 0.149 0.851 28 H 0.421 0.579 29 H 0.348 0.652 30 H 0.361 0.639 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.121 0.879 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.304 -0.711 -5.361 14.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.179 4.179 3 Si 0.810 3.190 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.184 1.184 7 C -0.516 4.516 8 H 0.101 0.899 9 C 0.104 3.896 10 C -0.321 4.321 11 C -0.043 4.043 12 N -0.298 5.298 13 C 0.106 3.894 14 N -0.299 5.299 15 C 0.286 3.714 16 O -0.391 6.391 17 C -0.018 4.018 18 H 0.141 0.859 19 N -0.366 5.366 20 C -0.151 4.151 21 C -0.173 4.173 22 C -0.213 4.213 23 C -0.218 4.218 24 C -0.282 4.282 25 H 0.103 0.897 26 H 0.134 0.866 27 H 0.167 0.833 28 H 0.259 0.741 29 H 0.162 0.838 30 H 0.179 0.821 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.139 0.861 34 H 0.109 0.891 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.105 0.895 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.982 -2.001 -5.728 14.330 hybrid contribution -0.012 1.713 0.964 1.966 sum -12.994 -0.287 -4.764 13.843 Atomic orbital electron populations 1.69772 1.08892 1.30791 1.34891 1.26806 0.95707 1.04490 0.90851 0.85077 0.78894 0.75391 0.79608 1.18491 1.19079 1.18358 1.19885 0.96205 0.90962 1.44510 0.89921 1.18022 0.91227 0.93296 0.87006 1.22117 1.04906 0.94299 1.10740 1.22211 0.90315 0.97543 0.94213 1.67309 1.15771 1.28660 1.18037 1.18487 0.87656 0.90348 0.92930 1.43491 1.21910 1.10399 1.54120 1.21487 0.88196 0.82889 0.78844 1.90724 1.64321 1.33988 1.50040 1.21208 0.88749 0.95120 0.96753 0.85921 1.58523 1.43277 1.02613 1.32195 1.21794 0.93257 1.02598 0.97416 1.22209 0.90971 1.02371 1.01722 1.23153 1.03600 0.91486 1.03106 1.23049 0.97943 1.02751 0.98011 1.21673 1.01405 0.95876 1.09265 0.89748 0.86597 0.83329 0.74097 0.83836 0.82146 0.92183 0.91328 0.86138 0.89125 0.87273 0.87322 0.89530 0.85249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.86 10.70 21.84 0.23 -39.62 16 2 C 0.04 1.80 5.31 85.29 0.45 2.25 16 3 Si 0.99 35.94 29.57 68.60 2.03 37.97 16 4 H -0.26 -9.13 7.11 99.48 0.71 -8.43 16 5 H -0.27 -9.15 7.11 99.48 0.71 -8.45 16 6 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 7 C -0.48 -25.27 9.14 23.52 0.21 -25.06 16 8 H 0.08 4.13 7.87 -2.91 -0.02 4.11 16 9 C 0.11 6.09 5.60 -21.12 -0.12 5.97 16 10 C -0.30 -14.98 9.90 22.84 0.23 -14.76 16 11 C 0.11 5.48 11.15 84.50 0.94 6.42 16 12 N -0.58 -30.38 7.89 -193.54 -1.53 -31.91 16 13 C 0.33 16.54 7.40 132.75 0.98 17.52 16 14 N -0.65 -25.78 5.39 -308.66 -1.66 -27.44 16 15 C 0.50 18.85 7.03 87.66 0.62 19.46 16 16 O -0.52 -24.41 14.54 -3.02 -0.04 -24.46 16 17 C 0.10 2.42 3.20 44.17 0.14 2.56 16 18 H 0.12 2.54 8.14 -2.38 -0.02 2.52 16 19 N -0.83 -19.38 8.95 -171.80 -1.54 -20.92 16 20 C -0.11 -2.39 5.12 30.59 0.16 -2.24 16 21 C -0.15 -2.41 5.59 -10.79 -0.06 -2.47 16 22 C -0.18 -2.58 10.18 30.62 0.31 -2.27 16 23 C -0.18 -2.67 10.26 30.62 0.31 -2.36 16 24 C -0.26 -13.38 8.61 22.98 0.20 -13.18 16 25 H 0.29 12.66 8.29 -92.71 -0.77 11.89 16 26 H 0.12 5.33 8.06 -2.91 -0.02 5.31 16 27 H 0.15 6.32 8.06 -2.91 -0.02 6.30 16 28 H 0.42 13.60 8.70 -92.71 -0.81 12.79 16 29 H 0.35 8.80 8.58 -89.70 -0.77 8.03 16 30 H 0.36 5.79 7.40 -89.69 -0.66 5.13 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 32 H 0.07 1.59 7.88 -2.39 -0.02 1.57 16 33 H 0.12 1.50 6.58 -2.38 -0.02 1.48 16 34 H 0.09 1.46 8.03 -2.39 -0.02 1.44 16 35 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.13 6.68 6.11 -2.91 -0.02 6.66 16 Total: -1.00 -68.13 323.10 0.74 -67.39 By element: Atomic # 1 Polarization: 48.25 SS G_CDS: -1.13 Total: 47.12 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: 4.38 Total: -8.13 kcal Atomic # 7 Polarization: -115.40 SS G_CDS: -4.49 Total: -119.89 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.04 Total: -24.46 kcal Atomic # 14 Polarization: 35.94 SS G_CDS: 2.03 Total: 37.97 kcal Total: -68.13 0.74 -67.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055871.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.407 kcal (2) G-P(sol) polarization free energy of solvation -68.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds