Wall clock time and date at job start Mon Mar 30 2020 02:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99951 * 2 1 4 4 H 1.48505 * 109.46817 * 239.99809 * 3 2 1 5 5 H 1.48496 * 109.47160 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46969 * 119.99908 * 3 2 1 7 7 C 1.37875 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99922 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00027 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46869 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.46580 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00165 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99778 * 180.02562 * 11 10 9 14 14 C 1.47134 * 121.32690 * 179.97438 * 13 11 10 15 15 C 1.52872 * 108.03234 * 115.81440 * 14 13 11 16 16 C 1.50330 * 110.72881 * 47.01527 * 15 14 13 17 17 C 1.39380 * 118.48741 * 160.67633 * 16 15 14 18 18 C 1.37855 * 119.55053 * 179.59205 * 17 16 15 19 19 N 1.31980 * 120.74873 * 359.96233 * 18 17 16 20 20 C 1.32240 * 121.46069 * 0.20395 * 19 18 17 21 21 N 1.38999 * 119.59122 * 180.02562 * 20 19 18 22 22 C 1.37515 * 123.14140 * 340.57901 * 16 15 14 23 23 C 1.46769 * 121.30651 * 359.97438 * 13 11 10 24 24 H 0.96997 * 119.99907 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47025 * 59.99604 * 9 7 2 26 26 H 1.09000 * 109.46558 * 299.99635 * 9 7 2 27 27 H 1.08999 * 109.47364 * 60.00126 * 10 9 7 28 28 H 1.08991 * 109.47283 * 299.99378 * 10 9 7 29 29 H 1.09006 * 109.70544 * 356.19635 * 14 13 11 30 30 H 1.08999 * 109.76026 * 235.46900 * 14 13 11 31 31 H 1.09002 * 109.22079 * 286.70283 * 15 14 13 32 32 H 1.09003 * 109.21938 * 167.32123 * 15 14 13 33 33 H 1.07992 * 120.22761 * 359.59122 * 17 16 15 34 34 H 1.07999 * 119.62972 * 179.97438 * 18 17 16 35 35 H 0.97009 * 120.00190 * 179.97438 * 21 20 19 36 36 H 0.96996 * 120.00547 * 359.97438 * 21 20 19 37 37 H 1.08997 * 109.45732 * 104.39309 * 23 13 11 38 38 H 1.08997 * 109.45920 * 344.43291 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4917 -4.9672 0.0012 12 8 0.2790 -4.9671 0.0021 13 7 2.1656 -6.1344 0.0018 14 6 1.4596 -7.4253 0.0030 15 6 1.7875 -8.1452 -1.3052 16 6 3.2647 -8.1021 -1.5804 17 6 3.8012 -9.0251 -2.4765 18 6 5.1518 -8.9999 -2.7515 19 7 5.9410 -8.1119 -2.1766 20 6 5.4697 -7.2225 -1.3189 21 7 6.3358 -6.3045 -0.7366 22 6 4.1130 -7.1939 -0.9917 23 6 3.6329 -6.1679 0.0013 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5570 -0.8896 26 1 0.6241 -2.5566 0.8903 27 1 2.8720 -3.6044 0.8905 28 1 2.8719 -3.6044 -0.8894 29 1 0.3849 -7.2564 0.0713 30 1 1.7933 -8.0270 0.8484 31 1 1.2556 -7.6610 -2.1242 32 1 1.4661 -9.1842 -1.2332 33 1 3.1632 -9.7551 -2.9522 34 1 5.5689 -9.7148 -3.4453 35 1 5.9964 -5.6492 -0.1069 36 1 7.2796 -6.3189 -0.9598 37 1 3.9904 -6.4308 0.9969 38 1 4.0184 -5.1866 -0.2753 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001635026574.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:00 Heat of formation + Delta-G solvation = -7.304831 kcal Electronic energy + Delta-G solvation = -20907.311096 eV Core-core repulsion = 17748.980222 eV Total energy + Delta-G solvation = -3158.330873 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.93412 -39.23603 -36.44739 -35.31303 -33.53380 -32.76772 -31.41804 -30.62563 -29.28208 -26.38049 -25.56965 -24.13055 -22.27552 -22.05969 -20.63500 -18.64182 -17.72318 -17.14282 -16.65602 -16.21478 -15.76731 -15.44613 -15.11707 -14.95914 -14.62978 -14.43630 -14.05327 -13.73263 -13.24336 -13.11024 -12.59316 -12.48287 -12.16322 -12.09048 -11.65465 -11.38210 -11.13891 -10.92936 -10.85782 -10.62881 -9.99017 -9.69723 -9.64267 -9.36937 -9.22148 -9.04593 -8.54094 -8.33143 -7.94807 -5.97521 -4.02259 1.11689 1.32039 3.12049 3.17395 3.33049 3.35870 3.38135 3.39546 3.73994 4.35551 4.45265 4.51391 4.70534 4.86007 4.91507 5.12263 5.24776 5.27752 5.29952 5.37401 5.40662 5.48866 5.63659 5.73482 5.89704 5.95694 6.14827 6.16097 6.28835 6.46933 6.59354 6.84992 7.07006 7.28126 7.67954 7.71841 7.83582 8.04988 8.09666 8.35783 8.66902 9.05629 9.61323 11.13407 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022812 B = 0.004246 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.105037 B = 6592.379892 C = 7482.659533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.517 3.483 12 O -0.530 6.530 13 N -0.624 5.624 14 C 0.110 3.890 15 C -0.101 4.101 16 C 0.017 3.983 17 C -0.236 4.236 18 C 0.144 3.856 19 N -0.549 5.549 20 C 0.415 3.585 21 N -0.850 5.850 22 C -0.211 4.211 23 C 0.162 3.838 24 H 0.262 0.738 25 H 0.023 0.977 26 H 0.024 0.976 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.130 0.870 34 H 0.154 0.846 35 H 0.409 0.591 36 H 0.404 0.596 37 H 0.074 0.926 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.801 -19.063 -1.861 21.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.169 4.169 11 C 0.308 3.692 12 O -0.404 6.404 13 N -0.360 5.360 14 C -0.013 4.013 15 C -0.138 4.138 16 C 0.009 3.991 17 C -0.259 4.259 18 C -0.012 4.012 19 N -0.268 5.268 20 C 0.176 3.824 21 N -0.394 5.394 22 C -0.219 4.219 23 C 0.038 3.962 24 H 0.071 0.929 25 H 0.042 0.958 26 H 0.043 0.957 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.117 0.883 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.148 0.852 34 H 0.171 0.829 35 H 0.240 0.760 36 H 0.234 0.766 37 H 0.092 0.908 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.801 -18.916 -2.058 21.879 hybrid contribution -0.002 1.037 0.198 1.056 sum 10.798 -17.879 -1.859 20.970 Atomic orbital electron populations 1.69984 1.06061 1.26730 1.50000 1.25015 0.94816 0.99198 0.95254 0.86657 0.79565 0.83202 0.78532 1.20263 1.21257 1.20232 1.21161 0.92840 0.90990 1.51660 0.92693 1.18905 0.93147 0.89301 0.98656 1.21904 1.00837 0.91939 1.02211 1.21559 0.88413 0.85180 0.74081 1.90664 1.14248 1.86963 1.48548 1.48203 1.05793 1.06126 1.75860 1.21484 0.99565 0.84138 0.96077 1.20878 0.91492 1.01872 0.99605 1.19516 0.95457 0.91698 0.92445 1.21800 0.96867 1.03295 1.03921 1.22265 0.90018 0.93877 0.95012 1.67176 1.39636 1.07299 1.12677 1.18182 0.86916 0.88208 0.89122 1.42309 1.10590 1.36123 1.50369 1.19963 0.92797 1.03107 1.06022 1.20181 0.81003 0.98143 0.96869 0.92863 0.95835 0.95749 0.90225 0.90311 0.88267 0.91343 0.89375 0.89269 0.85187 0.82909 0.75973 0.76621 0.90774 0.88677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.30 13.29 55.43 0.74 -26.56 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.53 -14.84 9.11 -34.44 -0.31 -15.15 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 10 C -0.13 -2.60 4.06 -27.88 -0.11 -2.72 16 11 C 0.52 10.04 7.72 -10.98 -0.08 9.95 16 12 O -0.53 -12.39 15.46 5.56 0.09 -12.30 16 13 N -0.62 -9.23 2.94 -174.44 -0.51 -9.74 16 14 C 0.11 1.37 6.43 -3.76 -0.02 1.35 16 15 C -0.10 -1.07 5.91 -28.13 -0.17 -1.24 16 16 C 0.02 0.19 5.77 -104.64 -0.60 -0.41 16 17 C -0.24 -2.37 9.72 -39.30 -0.38 -2.75 16 18 C 0.14 1.48 11.17 -17.63 -0.20 1.29 16 19 N -0.55 -6.66 10.40 -12.40 -0.13 -6.79 16 20 C 0.42 4.83 7.72 -154.99 -1.20 3.63 16 21 N -0.85 -7.44 8.98 31.19 0.28 -7.16 16 22 C -0.21 -2.53 5.83 -104.41 -0.61 -3.13 16 23 C 0.16 1.92 5.10 -5.08 -0.03 1.90 16 24 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 26 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 27 H 0.08 1.43 8.11 -51.93 -0.42 1.01 16 28 H 0.08 1.47 7.58 -51.93 -0.39 1.08 16 29 H 0.10 1.37 7.06 -51.93 -0.37 1.00 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.09 0.71 8.12 -51.93 -0.42 0.29 16 33 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.41 2.96 7.07 -40.82 -0.29 2.67 16 36 H 0.40 3.02 8.95 -40.82 -0.37 2.66 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.10 1.10 5.48 -51.93 -0.28 0.81 16 LS Contribution 315.35 15.07 4.75 4.75 Total: -1.00 -35.18 315.35 -8.78 -43.96 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -5.04 Total: 2.15 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -3.93 Total: -4.79 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: 0.38 Total: -50.25 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.09 Total: -12.30 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -35.18 -8.78 -43.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635026574.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.657 kcal (2) G-P(sol) polarization free energy of solvation -35.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds