Wall clock time and date at job start Mon Mar 30 2020 02:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99951 * 2 1 4 4 H 1.48505 * 109.46817 * 239.99809 * 3 2 1 5 5 H 1.48496 * 109.47160 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46969 * 119.99908 * 3 2 1 7 7 C 1.37875 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99922 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00027 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46869 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.46580 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00165 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99778 * 180.02562 * 11 10 9 14 14 C 1.47134 * 121.32690 * 179.97438 * 13 11 10 15 15 C 1.52872 * 108.03234 * 115.81440 * 14 13 11 16 16 C 1.50330 * 110.72881 * 47.01527 * 15 14 13 17 17 C 1.39380 * 118.48741 * 160.67633 * 16 15 14 18 18 C 1.37855 * 119.55053 * 179.59205 * 17 16 15 19 19 N 1.31980 * 120.74873 * 359.96233 * 18 17 16 20 20 C 1.32240 * 121.46069 * 0.20395 * 19 18 17 21 21 N 1.38999 * 119.59122 * 180.02562 * 20 19 18 22 22 C 1.37515 * 123.14140 * 340.57901 * 16 15 14 23 23 C 1.46769 * 121.30651 * 359.97438 * 13 11 10 24 24 H 0.96997 * 119.99907 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47025 * 59.99604 * 9 7 2 26 26 H 1.09000 * 109.46558 * 299.99635 * 9 7 2 27 27 H 1.08999 * 109.47364 * 60.00126 * 10 9 7 28 28 H 1.08991 * 109.47283 * 299.99378 * 10 9 7 29 29 H 1.09006 * 109.70544 * 356.19635 * 14 13 11 30 30 H 1.08999 * 109.76026 * 235.46900 * 14 13 11 31 31 H 1.09002 * 109.22079 * 286.70283 * 15 14 13 32 32 H 1.09003 * 109.21938 * 167.32123 * 15 14 13 33 33 H 1.07992 * 120.22761 * 359.59122 * 17 16 15 34 34 H 1.07999 * 119.62972 * 179.97438 * 18 17 16 35 35 H 0.97009 * 120.00190 * 179.97438 * 21 20 19 36 36 H 0.96996 * 120.00547 * 359.97438 * 21 20 19 37 37 H 1.08997 * 109.45732 * 104.39309 * 23 13 11 38 38 H 1.08997 * 109.45920 * 344.43291 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4917 -4.9672 0.0012 12 8 0.2790 -4.9671 0.0021 13 7 2.1656 -6.1344 0.0018 14 6 1.4596 -7.4253 0.0030 15 6 1.7875 -8.1452 -1.3052 16 6 3.2647 -8.1021 -1.5804 17 6 3.8012 -9.0251 -2.4765 18 6 5.1518 -8.9999 -2.7515 19 7 5.9410 -8.1119 -2.1766 20 6 5.4697 -7.2225 -1.3189 21 7 6.3358 -6.3045 -0.7366 22 6 4.1130 -7.1939 -0.9917 23 6 3.6329 -6.1679 0.0013 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5570 -0.8896 26 1 0.6241 -2.5566 0.8903 27 1 2.8720 -3.6044 0.8905 28 1 2.8719 -3.6044 -0.8894 29 1 0.3849 -7.2564 0.0713 30 1 1.7933 -8.0270 0.8484 31 1 1.2556 -7.6610 -2.1242 32 1 1.4661 -9.1842 -1.2332 33 1 3.1632 -9.7551 -2.9522 34 1 5.5689 -9.7148 -3.4453 35 1 5.9964 -5.6492 -0.1069 36 1 7.2796 -6.3189 -0.9598 37 1 3.9904 -6.4308 0.9969 38 1 4.0184 -5.1866 -0.2753 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001635026574.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:00 Heat of formation + Delta-G solvation = -31.668806 kcal Electronic energy + Delta-G solvation = -20908.367597 eV Core-core repulsion = 17748.980222 eV Total energy + Delta-G solvation = -3159.387374 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.86672 -40.54994 -37.63570 -36.11049 -35.58480 -33.88702 -32.98408 -31.85462 -30.18235 -27.97984 -26.84065 -25.29007 -23.66362 -23.07126 -21.97682 -19.83390 -19.04278 -18.29544 -17.95750 -17.30537 -17.24639 -16.71149 -16.42960 -15.94501 -15.84019 -15.74886 -15.08404 -14.88592 -14.37449 -14.32035 -14.21547 -13.85678 -13.41720 -13.27209 -13.17430 -12.78768 -12.60289 -12.48542 -12.29658 -11.94093 -11.61755 -11.59187 -11.32565 -10.77823 -10.55926 -10.47353 -10.22991 -9.72248 -8.70489 -8.17497 -6.31732 0.30063 0.52077 1.42490 1.46864 1.54528 1.62851 1.93982 2.43360 2.65795 2.93541 3.15618 3.49119 3.64522 3.77696 3.87074 4.05139 4.14854 4.27406 4.38707 4.42655 4.46605 4.52364 4.61542 4.65832 4.78215 4.82547 4.98207 5.04542 5.10381 5.42346 5.48485 5.53720 5.61471 5.73881 5.84541 6.16971 6.34053 6.36576 6.60832 6.86131 7.19666 7.35603 7.38618 8.95065 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022812 B = 0.004246 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.105037 B = 6592.379892 C = 7482.659533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.005 4.005 3 Si 0.973 3.027 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.260 1.260 7 C -0.543 4.543 8 H 0.077 0.923 9 C 0.043 3.957 10 C -0.117 4.117 11 C 0.515 3.485 12 O -0.584 6.584 13 N -0.613 5.613 14 C 0.105 3.895 15 C -0.093 4.093 16 C 0.002 3.998 17 C -0.235 4.235 18 C 0.138 3.862 19 N -0.570 5.570 20 C 0.406 3.594 21 N -0.841 5.841 22 C -0.227 4.227 23 C 0.159 3.841 24 H 0.263 0.737 25 H -0.020 1.020 26 H -0.016 1.016 27 H 0.108 0.892 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.121 0.879 33 H 0.155 0.845 34 H 0.181 0.819 35 H 0.416 0.584 36 H 0.411 0.589 37 H 0.099 0.901 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.588 -19.968 -2.001 24.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.797 3.203 4 H -0.188 1.188 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.095 0.905 9 C 0.006 3.994 10 C -0.156 4.156 11 C 0.306 3.694 12 O -0.463 6.463 13 N -0.346 5.346 14 C -0.017 4.017 15 C -0.130 4.130 16 C -0.006 4.006 17 C -0.258 4.258 18 C -0.017 4.017 19 N -0.289 5.289 20 C 0.166 3.834 21 N -0.386 5.386 22 C -0.235 4.235 23 C 0.036 3.964 24 H 0.071 0.929 25 H -0.002 1.002 26 H 0.003 0.997 27 H 0.126 0.874 28 H 0.116 0.884 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.139 0.861 33 H 0.172 0.828 34 H 0.198 0.802 35 H 0.248 0.752 36 H 0.241 0.759 37 H 0.117 0.883 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 13.662 -19.862 -2.189 24.207 hybrid contribution -0.844 1.203 0.220 1.486 sum 12.818 -18.659 -1.969 22.723 Atomic orbital electron populations 1.70172 1.08336 1.27866 1.51391 1.26123 0.95686 1.03895 0.94600 0.85388 0.78073 0.77386 0.79486 1.18824 1.21422 1.18496 1.21667 0.94003 0.91493 1.50927 0.90493 1.18683 0.93650 0.92399 0.94684 1.21655 0.99419 0.90145 1.04410 1.21325 0.87652 0.86333 0.74096 1.90644 1.16359 1.87797 1.51518 1.48111 1.07300 1.05592 1.73589 1.21703 0.98416 0.83260 0.98364 1.20828 0.91228 1.03225 0.97721 1.19723 0.95587 0.92206 0.93056 1.22050 0.97166 1.03242 1.03334 1.22800 0.90242 0.93783 0.94896 1.67248 1.40362 1.08013 1.13295 1.18344 0.87152 0.88646 0.89293 1.42306 1.10710 1.35574 1.49992 1.19976 0.93252 1.03525 1.06766 1.20412 0.78707 0.98757 0.98480 0.92865 1.00190 0.99747 0.87431 0.88421 0.90209 0.88788 0.90815 0.86116 0.82770 0.80217 0.75152 0.75904 0.88343 0.88306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.47 13.29 21.45 0.28 -59.19 16 2 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 3 Si 0.97 43.95 29.54 68.60 2.03 45.97 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 5 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 7 C -0.54 -30.68 9.11 25.60 0.23 -30.44 16 8 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 9 C 0.04 2.42 4.26 29.85 0.13 2.55 16 10 C -0.12 -4.70 4.06 29.85 0.12 -4.58 16 11 C 0.52 20.36 7.72 87.66 0.68 21.03 16 12 O -0.58 -28.79 15.46 -3.02 -0.05 -28.84 16 13 N -0.61 -17.58 2.94 -824.19 -2.42 -20.00 16 14 C 0.10 2.50 6.43 86.22 0.55 3.05 16 15 C -0.09 -1.81 5.91 29.69 0.18 -1.63 16 16 C 0.00 0.04 5.77 -19.88 -0.11 -0.07 16 17 C -0.24 -4.07 9.72 22.45 0.22 -3.85 16 18 C 0.14 2.47 11.17 84.58 0.94 3.42 16 19 N -0.57 -12.55 10.40 -193.14 -2.01 -14.56 16 20 C 0.41 8.56 7.72 133.22 1.03 9.59 16 21 N -0.84 -12.86 8.98 -55.24 -0.50 -13.35 16 22 C -0.23 -4.95 5.83 -19.73 -0.12 -5.07 16 23 C 0.16 3.43 5.10 85.56 0.44 3.87 16 24 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 25 H -0.02 -1.29 8.10 -2.39 -0.02 -1.31 16 26 H -0.02 -1.00 8.10 -2.39 -0.02 -1.02 16 27 H 0.11 3.70 8.11 -2.39 -0.02 3.68 16 28 H 0.10 3.55 7.58 -2.39 -0.02 3.53 16 29 H 0.08 2.25 7.06 -2.38 -0.02 2.23 16 30 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.12 1.58 8.12 -2.39 -0.02 1.56 16 33 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 34 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 35 H 0.42 4.98 7.07 -92.70 -0.66 4.33 16 36 H 0.41 5.29 8.95 -92.71 -0.83 4.46 16 37 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.10 2.04 5.48 -2.39 -0.01 2.02 16 Total: -1.00 -79.67 315.35 1.70 -77.97 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -0.39 Total: 13.98 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 4.75 Total: -1.98 kcal Atomic # 7 Polarization: -102.46 SS G_CDS: -4.64 Total: -107.10 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -0.05 Total: -28.84 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -79.67 1.70 -77.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635026574.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.297 kcal (2) G-P(sol) polarization free energy of solvation -79.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds