Wall clock time and date at job start Mon Mar 30 2020 02:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99941 * 2 1 4 4 H 1.48501 * 109.47002 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47165 * 300.00428 * 3 2 1 6 6 H 1.48503 * 109.46798 * 60.00239 * 3 2 1 7 7 C 1.37883 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99844 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00119 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.46963 * 180.02562 * 9 7 2 11 11 C 1.34779 * 119.99471 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00596 * 0.02562 * 11 10 9 13 13 C 1.50707 * 119.99824 * 180.02562 * 11 10 9 14 14 H 1.09003 * 110.90236 * 56.12905 * 13 11 10 15 15 C 1.55429 * 111.10209 * 292.17339 * 13 11 10 16 16 C 1.54322 * 103.04571 * 206.29378 * 15 13 11 17 17 N 1.47447 * 107.23126 * 22.28401 * 16 15 13 18 18 C 1.39162 * 111.00090 * 123.25614 * 17 16 15 19 19 C 1.39475 * 120.86629 * 113.15064 * 18 17 16 20 20 C 1.37899 * 119.06835 * 179.73093 * 19 18 17 21 21 N 1.31995 * 120.84125 * 0.55604 * 20 19 18 22 22 C 1.31997 * 121.91021 * 359.72013 * 21 20 19 23 23 C 1.37895 * 120.84233 * 359.97438 * 22 21 20 24 24 C 1.47843 * 108.56727 * 0.98868 * 17 16 15 25 25 H 0.96999 * 120.00037 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46570 * 60.00440 * 9 7 2 27 27 H 1.08995 * 109.47289 * 300.00418 * 9 7 2 28 28 H 0.96999 * 120.00528 * 0.02562 * 10 9 7 29 29 H 1.09003 * 110.69716 * 87.90809 * 15 13 11 30 30 H 1.08994 * 110.69747 * 324.68299 * 15 13 11 31 31 H 1.08998 * 109.89199 * 262.87812 * 16 15 13 32 32 H 1.08996 * 109.88797 * 141.68627 * 16 15 13 33 33 H 1.07998 * 120.46487 * 359.97438 * 19 18 17 34 34 H 1.08002 * 119.57615 * 180.29644 * 20 19 18 35 35 H 1.07994 * 119.57621 * 179.97438 * 22 21 20 36 36 H 1.07997 * 120.46526 * 179.97438 * 23 22 21 37 37 H 1.09003 * 110.37640 * 94.73122 * 24 17 16 38 38 H 1.09003 * 110.37816 * 216.96681 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7538 -4.8833 -0.0011 12 8 0.5615 -5.1050 -0.0020 13 6 2.7331 -6.0288 -0.0005 14 1 3.4166 -5.9558 0.8455 15 6 3.5138 -6.0984 -1.3427 16 6 3.8977 -7.5895 -1.4455 17 7 2.9540 -8.3429 -0.5995 18 6 2.2924 -9.3195 -1.3380 19 6 2.5099 -10.6745 -1.0893 20 6 1.8303 -11.6109 -1.8397 21 7 0.9924 -11.2385 -2.7891 22 6 0.7638 -9.9667 -3.0586 23 6 1.3987 -8.9687 -2.3497 24 6 1.9945 -7.3905 -0.0012 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6247 -2.5572 0.8896 28 1 3.1568 -3.4354 -0.0002 29 1 4.4055 -5.4728 -1.3026 30 1 2.8743 -5.8068 -2.1758 31 1 4.9162 -7.7359 -1.0859 32 1 3.8159 -7.9230 -2.4800 33 1 3.1979 -10.9860 -0.3173 34 1 1.9889 -12.6624 -1.6508 35 1 0.0707 -9.7045 -3.8441 36 1 1.2074 -7.9301 -2.5756 37 1 1.0904 -7.3313 -0.6073 38 1 1.7485 -7.6892 1.0178 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001638637706.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:48 Heat of formation + Delta-G solvation = 3.397073 kcal Electronic energy + Delta-G solvation = -20495.355654 eV Core-core repulsion = 17337.488850 eV Total energy + Delta-G solvation = -3157.866804 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.93966 -39.41087 -37.84672 -34.28133 -33.43252 -32.32682 -31.41159 -29.77981 -29.19557 -27.25439 -24.12761 -23.50816 -22.92953 -21.64269 -20.97558 -19.52721 -18.01652 -16.95403 -16.66457 -16.06663 -15.85934 -15.39050 -15.07705 -14.66269 -14.40867 -14.21990 -13.90233 -13.83358 -13.52500 -13.28133 -12.78074 -12.36946 -12.08090 -11.98011 -11.71249 -11.65821 -11.28587 -11.00234 -10.96514 -10.90978 -10.36427 -9.75211 -9.61905 -9.43916 -9.35091 -9.12424 -8.80803 -8.76672 -7.97138 -6.21930 -4.29169 0.94093 0.99816 3.19610 3.20895 3.26971 3.29773 3.46425 3.59496 4.05561 4.28284 4.32042 4.40565 4.58235 4.67936 4.86108 4.87666 5.00840 5.14326 5.15327 5.27587 5.28928 5.47597 5.55366 5.58629 5.62037 5.71503 5.73946 5.91300 6.04420 6.10933 6.40973 6.49721 7.04770 7.23356 7.34266 7.44521 7.60017 7.79080 7.90952 8.53665 8.70874 8.99937 9.37680 10.88281 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.041172 B = 0.003201 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.904218 B = 8745.856734 C = 9002.606428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.708 5.708 11 C 0.507 3.493 12 O -0.555 6.555 13 C -0.120 4.120 14 H 0.108 0.892 15 C -0.130 4.130 16 C 0.049 3.951 17 N -0.500 5.500 18 C 0.137 3.863 19 C -0.153 4.153 20 C 0.101 3.899 21 N -0.493 5.493 22 C 0.107 3.893 23 C -0.201 4.201 24 C 0.063 3.937 25 H 0.266 0.734 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.391 0.609 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.140 0.860 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.135 0.865 37 H 0.073 0.927 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.769 -18.219 -3.271 20.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.082 0.918 9 C 0.128 3.872 10 N -0.355 5.355 11 C 0.291 3.709 12 O -0.435 6.435 13 C -0.142 4.142 14 H 0.126 0.874 15 C -0.169 4.169 16 C -0.076 4.076 17 N -0.221 5.221 18 C 0.034 3.966 19 C -0.174 4.174 20 C -0.056 4.056 21 N -0.202 5.202 22 C -0.049 4.049 23 C -0.223 4.223 24 C -0.063 4.063 25 H 0.076 0.924 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.224 0.776 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.158 0.842 34 H 0.174 0.826 35 H 0.172 0.828 36 H 0.153 0.847 37 H 0.091 0.909 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.588 -19.093 -3.356 20.818 hybrid contribution 0.861 2.212 -0.043 2.374 sum 8.449 -16.881 -3.400 19.181 Atomic orbital electron populations 1.69981 1.06127 1.27267 1.48853 1.24961 0.94918 0.99506 0.94645 0.86357 0.79823 0.82917 0.77799 1.19612 1.20772 1.20757 1.21250 0.93289 0.90402 1.53270 0.91831 1.19129 0.88309 0.81989 0.97763 1.46453 1.11192 1.06035 1.71832 1.20094 0.88995 0.84225 0.77592 1.90670 1.16784 1.84851 1.51150 1.22504 0.97759 0.94067 0.99880 0.87415 1.22830 1.00880 0.96432 0.96731 1.22914 0.96929 0.91821 0.95977 1.61160 1.16831 1.13225 1.30876 1.19352 0.92797 0.93077 0.91368 1.22073 1.01766 0.91960 1.01563 1.22717 0.91830 1.00063 0.91030 1.67715 1.16042 1.19581 1.16860 1.22632 0.96874 0.87673 0.97747 1.22822 0.99612 1.01882 0.98011 1.23010 0.93895 0.88160 1.01222 0.92449 0.95541 0.95484 0.77622 0.89360 0.90600 0.89466 0.92083 0.84196 0.82572 0.82760 0.84719 0.90917 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.75 13.29 55.43 0.74 -25.01 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.54 -14.44 9.28 -34.44 -0.32 -14.76 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.25 6.43 5.43 -5.20 -0.03 6.41 16 10 N -0.71 -14.22 5.55 -61.47 -0.34 -14.57 16 11 C 0.51 9.57 7.16 -10.98 -0.08 9.49 16 12 O -0.56 -12.83 15.72 5.56 0.09 -12.74 16 13 C -0.12 -1.60 3.44 -89.47 -0.31 -1.91 16 14 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 15 C -0.13 -1.43 6.41 -24.75 -0.16 -1.59 16 16 C 0.05 0.49 6.64 -2.83 -0.02 0.47 16 17 N -0.50 -5.72 5.17 -167.72 -0.87 -6.59 16 18 C 0.14 1.57 4.60 -83.61 -0.38 1.18 16 19 C -0.15 -1.52 10.06 -39.24 -0.39 -1.92 16 20 C 0.10 0.99 11.17 -17.61 -0.20 0.79 16 21 N -0.49 -5.77 10.36 -13.35 -0.14 -5.91 16 22 C 0.11 1.19 11.17 -17.61 -0.20 0.99 16 23 C -0.20 -2.32 8.22 -39.25 -0.32 -2.64 16 24 C 0.06 0.85 5.65 -2.30 -0.01 0.83 16 25 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.39 6.69 8.32 -40.82 -0.34 6.35 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 0.93 8.04 -51.93 -0.42 0.51 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.59 7.25 -51.93 -0.38 0.22 16 33 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 34 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.13 1.57 7.43 -52.49 -0.39 1.18 16 37 H 0.07 1.11 5.65 -51.93 -0.29 0.82 16 38 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 321.26 15.07 4.84 4.84 Total: -1.00 -32.11 321.26 -8.38 -40.49 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -5.16 Total: 5.01 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -2.52 Total: -1.01 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: -0.61 Total: -52.07 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.09 Total: -12.74 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.11 -8.38 -40.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638637706.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.884 kcal (2) G-P(sol) polarization free energy of solvation -32.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds