Wall clock time and date at job start Mon Mar 30 2020 02:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99941 * 2 1 4 4 H 1.48501 * 109.47002 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47165 * 300.00428 * 3 2 1 6 6 H 1.48503 * 109.46798 * 60.00239 * 3 2 1 7 7 C 1.37883 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99844 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00119 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.46963 * 180.02562 * 9 7 2 11 11 C 1.34779 * 119.99471 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00596 * 0.02562 * 11 10 9 13 13 C 1.50707 * 119.99824 * 180.02562 * 11 10 9 14 14 H 1.09003 * 110.90236 * 56.12905 * 13 11 10 15 15 C 1.55429 * 111.10209 * 292.17339 * 13 11 10 16 16 C 1.54322 * 103.04571 * 206.29378 * 15 13 11 17 17 N 1.47447 * 107.23126 * 22.28401 * 16 15 13 18 18 C 1.39162 * 111.00090 * 123.25614 * 17 16 15 19 19 C 1.39475 * 120.86629 * 113.15064 * 18 17 16 20 20 C 1.37899 * 119.06835 * 179.73093 * 19 18 17 21 21 N 1.31995 * 120.84125 * 0.55604 * 20 19 18 22 22 C 1.31997 * 121.91021 * 359.72013 * 21 20 19 23 23 C 1.37895 * 120.84233 * 359.97438 * 22 21 20 24 24 C 1.47843 * 108.56727 * 0.98868 * 17 16 15 25 25 H 0.96999 * 120.00037 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46570 * 60.00440 * 9 7 2 27 27 H 1.08995 * 109.47289 * 300.00418 * 9 7 2 28 28 H 0.96999 * 120.00528 * 0.02562 * 10 9 7 29 29 H 1.09003 * 110.69716 * 87.90809 * 15 13 11 30 30 H 1.08994 * 110.69747 * 324.68299 * 15 13 11 31 31 H 1.08998 * 109.89199 * 262.87812 * 16 15 13 32 32 H 1.08996 * 109.88797 * 141.68627 * 16 15 13 33 33 H 1.07998 * 120.46487 * 359.97438 * 19 18 17 34 34 H 1.08002 * 119.57615 * 180.29644 * 20 19 18 35 35 H 1.07994 * 119.57621 * 179.97438 * 22 21 20 36 36 H 1.07997 * 120.46526 * 179.97438 * 23 22 21 37 37 H 1.09003 * 110.37640 * 94.73122 * 24 17 16 38 38 H 1.09003 * 110.37816 * 216.96681 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7538 -4.8833 -0.0011 12 8 0.5615 -5.1050 -0.0020 13 6 2.7331 -6.0288 -0.0005 14 1 3.4166 -5.9558 0.8455 15 6 3.5138 -6.0984 -1.3427 16 6 3.8977 -7.5895 -1.4455 17 7 2.9540 -8.3429 -0.5995 18 6 2.2924 -9.3195 -1.3380 19 6 2.5099 -10.6745 -1.0893 20 6 1.8303 -11.6109 -1.8397 21 7 0.9924 -11.2385 -2.7891 22 6 0.7638 -9.9667 -3.0586 23 6 1.3987 -8.9687 -2.3497 24 6 1.9945 -7.3905 -0.0012 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6247 -2.5572 0.8896 28 1 3.1568 -3.4354 -0.0002 29 1 4.4055 -5.4728 -1.3026 30 1 2.8743 -5.8068 -2.1758 31 1 4.9162 -7.7359 -1.0859 32 1 3.8159 -7.9230 -2.4800 33 1 3.1979 -10.9860 -0.3173 34 1 1.9889 -12.6624 -1.6508 35 1 0.0707 -9.7045 -3.8441 36 1 1.2074 -7.9301 -2.5756 37 1 1.0904 -7.3313 -0.6073 38 1 1.7485 -7.6892 1.0178 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001638637706.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:47 Heat of formation + Delta-G solvation = -20.100516 kcal Electronic energy + Delta-G solvation = -20496.374586 eV Core-core repulsion = 17337.488850 eV Total energy + Delta-G solvation = -3158.885736 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.88188 -40.69873 -39.03928 -36.18926 -34.61216 -34.11129 -32.21426 -30.87053 -30.14079 -29.13893 -25.50910 -24.49902 -24.12641 -23.05813 -21.87662 -21.07637 -19.27251 -18.32864 -17.79388 -17.30666 -17.11632 -16.76879 -16.38381 -16.14223 -15.79709 -15.38977 -15.01454 -14.68163 -14.61061 -14.30802 -14.22948 -13.98611 -13.90432 -13.20790 -12.94439 -12.81437 -12.75204 -12.55604 -12.29465 -12.21318 -11.94800 -11.47128 -10.83528 -10.78606 -10.57994 -10.46862 -10.15148 -9.87958 -9.69063 -8.30846 -6.47412 0.10548 0.17992 1.42949 1.43686 1.57220 1.67342 2.24111 2.42138 2.76850 2.83104 3.04499 3.40979 3.54147 3.55021 3.79668 3.92829 4.02125 4.17834 4.22757 4.26367 4.28761 4.46967 4.65841 4.73463 4.79099 4.83175 4.86846 4.93362 5.08352 5.12265 5.21499 5.26687 5.46298 5.56933 5.61840 5.65982 5.82872 6.15358 6.63807 6.85581 6.98215 7.21756 7.43993 8.81555 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.041172 B = 0.003201 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.904218 B = 8745.856734 C = 9002.606428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.984 3.016 4 H -0.251 1.251 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.554 4.554 8 H 0.086 0.914 9 C 0.265 3.735 10 N -0.701 5.701 11 C 0.506 3.494 12 O -0.603 6.603 13 C -0.106 4.106 14 H 0.138 0.862 15 C -0.124 4.124 16 C 0.053 3.947 17 N -0.491 5.491 18 C 0.121 3.879 19 C -0.149 4.149 20 C 0.101 3.899 21 N -0.513 5.513 22 C 0.099 3.901 23 C -0.213 4.213 24 C 0.065 3.935 25 H 0.268 0.732 26 H -0.013 1.013 27 H -0.013 1.013 28 H 0.410 0.590 29 H 0.115 0.885 30 H 0.057 0.943 31 H 0.113 0.887 32 H 0.063 0.937 33 H 0.162 0.838 34 H 0.189 0.811 35 H 0.167 0.833 36 H 0.124 0.876 37 H 0.045 0.955 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.014 -18.888 -3.070 22.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.807 3.193 4 H -0.174 1.174 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.592 4.592 8 H 0.104 0.896 9 C 0.143 3.857 10 N -0.350 5.350 11 C 0.292 3.708 12 O -0.485 6.485 13 C -0.128 4.128 14 H 0.156 0.844 15 C -0.163 4.163 16 C -0.073 4.073 17 N -0.212 5.212 18 C 0.018 3.982 19 C -0.169 4.169 20 C -0.056 4.056 21 N -0.223 5.223 22 C -0.057 4.057 23 C -0.235 4.235 24 C -0.061 4.061 25 H 0.077 0.923 26 H 0.005 0.995 27 H 0.005 0.995 28 H 0.246 0.754 29 H 0.134 0.866 30 H 0.076 0.924 31 H 0.131 0.869 32 H 0.081 0.919 33 H 0.180 0.820 34 H 0.205 0.795 35 H 0.185 0.815 36 H 0.142 0.858 37 H 0.064 0.936 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.886 -19.793 -3.163 22.810 hybrid contribution -0.210 2.318 -0.112 2.330 sum 10.676 -17.475 -3.276 20.739 Atomic orbital electron populations 1.70143 1.08315 1.28509 1.50071 1.26073 0.95755 1.03951 0.93883 0.85116 0.79193 0.77327 0.77619 1.17443 1.20551 1.20560 1.21647 0.94359 0.90464 1.52705 0.89639 1.18552 0.88722 0.84422 0.94045 1.46160 1.11252 1.05359 1.72248 1.21074 0.89343 0.84877 0.75468 1.90650 1.19503 1.85542 1.52828 1.22444 0.96710 0.91079 1.02580 0.84439 1.22861 1.01119 0.97977 0.94306 1.23008 0.97621 0.90469 0.96186 1.61246 1.16058 1.12647 1.31231 1.19563 0.93223 0.93868 0.91520 1.22304 1.01764 0.91101 1.01733 1.23267 0.90700 1.01627 0.89991 1.67768 1.16981 1.19630 1.17897 1.22858 0.97112 0.87646 0.98120 1.22791 1.00460 1.01475 0.98784 1.22897 0.93531 0.88798 1.00901 0.92271 0.99543 0.99517 0.75428 0.86631 0.92404 0.86861 0.91857 0.82025 0.79460 0.81537 0.85838 0.93612 0.89363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.79 13.29 21.45 0.28 -55.50 16 2 C 0.00 0.16 5.46 84.66 0.46 0.62 16 3 Si 0.98 41.63 29.54 68.60 2.03 43.65 16 4 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 5 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 6 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.55 -29.50 9.28 25.60 0.24 -29.27 16 8 H 0.09 4.08 7.60 -2.91 -0.02 4.06 16 9 C 0.27 14.32 5.43 85.63 0.46 14.78 16 10 N -0.70 -28.41 5.55 -466.79 -2.59 -31.00 16 11 C 0.51 19.41 7.16 87.66 0.63 20.04 16 12 O -0.60 -29.36 15.72 -3.02 -0.05 -29.41 16 13 C -0.11 -2.70 3.44 -10.05 -0.03 -2.73 16 14 H 0.14 2.77 8.14 -2.39 -0.02 2.75 16 15 C -0.12 -2.46 6.41 31.88 0.20 -2.26 16 16 C 0.05 0.90 6.64 86.65 0.58 1.48 16 17 N -0.49 -10.33 5.17 -684.54 -3.54 -13.87 16 18 C 0.12 2.63 4.60 38.58 0.18 2.81 16 19 C -0.15 -2.62 10.06 22.49 0.23 -2.40 16 20 C 0.10 1.77 11.17 84.59 0.95 2.71 16 21 N -0.51 -11.49 10.36 -196.16 -2.03 -13.52 16 22 C 0.10 2.19 11.17 84.59 0.95 3.13 16 23 C -0.21 -4.96 8.22 22.49 0.18 -4.77 16 24 C 0.07 1.72 5.65 86.77 0.49 2.21 16 25 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 26 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 27 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 28 H 0.41 13.41 8.32 -92.71 -0.77 12.64 16 29 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.06 1.37 8.04 -2.39 -0.02 1.36 16 31 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.10 7.25 -2.39 -0.02 1.08 16 33 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 34 H 0.19 1.95 8.06 -2.91 -0.02 1.92 16 35 H 0.17 3.03 8.06 -2.91 -0.02 3.00 16 36 H 0.12 3.07 7.43 -2.91 -0.02 3.05 16 37 H 0.05 1.46 5.65 -2.39 -0.01 1.45 16 38 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -72.81 321.26 -0.10 -72.91 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 0.30 Total: 20.39 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 5.51 Total: 6.36 kcal Atomic # 7 Polarization: -106.02 SS G_CDS: -7.88 Total: -113.90 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.05 Total: -29.41 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal Total: -72.81 -0.10 -72.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638637706.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.805 kcal (2) G-P(sol) polarization free energy of solvation -72.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds