Wall clock time and date at job start Mon Mar 30 2020 02:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99900 * 2 1 4 4 H 1.48501 * 109.47019 * 270.00545 * 3 2 1 5 5 H 1.48496 * 109.47093 * 30.00445 * 3 2 1 6 6 H 1.48498 * 109.47088 * 150.00769 * 3 2 1 7 7 C 1.37874 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00350 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99934 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47204 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99824 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00143 * 359.97438 * 11 10 9 13 13 C 1.50704 * 119.99982 * 180.02562 * 11 10 9 14 14 H 1.09006 * 110.27155 * 302.08915 * 13 11 10 15 15 C 1.54592 * 110.31169 * 64.28126 * 13 11 10 16 16 C 1.54935 * 102.92201 * 140.87635 * 15 13 11 17 17 N 1.48811 * 103.34833 * 322.68932 * 16 15 13 18 18 C 1.39170 * 111.18086 * 159.50503 * 17 16 15 19 19 C 1.39472 * 120.86774 * 296.54702 * 18 17 16 20 20 C 1.37893 * 119.06847 * 179.73366 * 19 18 17 21 21 N 1.32000 * 120.83935 * 0.55447 * 20 19 18 22 22 C 1.31998 * 121.91041 * 359.71718 * 21 20 19 23 23 C 1.37895 * 120.84204 * 0.02562 * 22 21 20 24 24 C 1.47907 * 105.67497 * 38.98074 * 17 16 15 25 25 H 0.97005 * 119.99830 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47239 * 60.00015 * 9 7 2 27 27 H 1.09003 * 109.47031 * 300.00168 * 9 7 2 28 28 H 0.96999 * 120.00161 * 359.97438 * 10 9 7 29 29 H 1.09001 * 110.72344 * 259.23630 * 15 13 11 30 30 H 1.09004 * 110.72536 * 22.33763 * 15 13 11 31 31 H 1.09001 * 110.66647 * 81.02482 * 16 15 13 32 32 H 1.08997 * 110.66402 * 203.98412 * 16 15 13 33 33 H 1.08008 * 120.46650 * 359.97404 * 19 18 17 34 34 H 1.07995 * 119.58112 * 180.29381 * 20 19 18 35 35 H 1.08000 * 119.57371 * 179.97438 * 22 21 20 36 36 H 1.08001 * 120.46099 * 180.02562 * 23 22 21 37 37 H 1.09004 * 109.91240 * 215.45482 * 24 17 16 38 38 H 1.08995 * 109.92129 * 94.35668 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8833 0.0000 12 8 0.5613 -5.1049 0.0009 13 6 2.7330 -6.0288 0.0006 14 1 3.3914 -5.9633 -0.8657 15 6 3.5599 -6.0273 1.3068 16 6 3.6724 -7.5346 1.6473 17 7 2.3443 -8.0764 1.2512 18 6 2.4020 -9.4524 1.0509 19 6 3.1946 -9.9958 0.0400 20 6 3.2285 -11.3647 -0.1220 21 7 2.5153 -12.1562 0.6574 22 6 1.7491 -11.6804 1.6211 23 6 1.6639 -10.3236 1.8518 24 6 1.9827 -7.3735 0.0010 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 3.1567 -3.4354 -0.0009 29 1 4.5463 -5.5952 1.1384 30 1 3.0341 -5.4891 2.0955 31 1 4.4655 -8.0025 1.0641 32 1 3.8464 -7.6760 2.7140 33 1 3.7767 -9.3535 -0.6044 34 1 3.8431 -11.7946 -0.8991 35 1 1.1811 -12.3625 2.2363 36 1 1.0353 -9.9410 2.6423 37 1 0.9072 -7.1986 -0.0288 38 1 2.2860 -7.9683 -0.8605 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001638637707.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:51 Heat of formation + Delta-G solvation = 5.333691 kcal Electronic energy + Delta-G solvation = -20405.198921 eV Core-core repulsion = 17247.416096 eV Total energy + Delta-G solvation = -3157.782826 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.92099 -39.45629 -37.75953 -34.24926 -33.51932 -32.30477 -31.47264 -29.77757 -29.10466 -27.21973 -24.21643 -23.50880 -22.82843 -21.55853 -21.12388 -19.39830 -17.82697 -17.48250 -16.61925 -15.93619 -15.87693 -15.36139 -14.99148 -14.72423 -14.40249 -14.31765 -13.95712 -13.92061 -13.37190 -12.93547 -12.63272 -12.42030 -12.06341 -11.95526 -11.84784 -11.62486 -11.34944 -10.98817 -10.93675 -10.83881 -10.33979 -9.78153 -9.66076 -9.42892 -9.39816 -9.08591 -8.77436 -8.75383 -7.92880 -6.19426 -4.26662 0.88247 0.96653 3.21835 3.28098 3.28585 3.30341 3.55102 3.56380 3.98946 4.22880 4.32778 4.38021 4.62743 4.65988 4.77568 4.91664 5.02203 5.10011 5.16773 5.20956 5.29123 5.42146 5.54498 5.56464 5.59833 5.65823 5.77790 5.99280 6.01029 6.14890 6.37047 6.53038 7.05820 7.27292 7.39255 7.48450 7.62712 7.74190 7.93975 8.57956 8.74135 9.04908 9.40090 10.90753 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.051787 B = 0.003030 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.549041 B = 9237.998905 C = 9426.154260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.709 5.709 11 C 0.507 3.493 12 O -0.550 6.550 13 C -0.122 4.122 14 H 0.099 0.901 15 C -0.112 4.112 16 C 0.042 3.958 17 N -0.484 5.484 18 C 0.137 3.863 19 C -0.207 4.207 20 C 0.106 3.894 21 N -0.494 5.494 22 C 0.103 3.897 23 C -0.149 4.149 24 C 0.048 3.952 25 H 0.266 0.734 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.390 0.610 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.088 0.912 33 H 0.133 0.867 34 H 0.154 0.846 35 H 0.158 0.842 36 H 0.142 0.858 37 H 0.112 0.888 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.658 -18.793 1.943 21.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.129 3.871 10 N -0.357 5.357 11 C 0.291 3.709 12 O -0.429 6.429 13 C -0.144 4.144 14 H 0.117 0.883 15 C -0.150 4.150 16 C -0.083 4.083 17 N -0.206 5.206 18 C 0.034 3.966 19 C -0.229 4.229 20 C -0.051 4.051 21 N -0.203 5.203 22 C -0.054 4.054 23 C -0.170 4.170 24 C -0.078 4.078 25 H 0.076 0.924 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.223 0.777 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.070 0.930 32 H 0.106 0.894 33 H 0.150 0.850 34 H 0.171 0.829 35 H 0.175 0.825 36 H 0.160 0.840 37 H 0.130 0.870 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.260 -19.576 2.220 21.363 hybrid contribution 1.433 1.891 -0.587 2.445 sum 9.694 -17.684 1.633 20.233 Atomic orbital electron populations 1.69975 1.06118 1.27340 1.48799 1.24954 0.94914 0.99468 0.94680 0.86415 0.79620 0.82653 0.78224 1.20463 1.20978 1.19746 1.21214 0.93231 0.90451 1.53326 0.91922 1.19117 0.88302 0.81948 0.97764 1.46421 1.11091 1.06028 1.72165 1.20109 0.89141 0.84256 0.77401 1.90645 1.16795 1.84459 1.50998 1.22153 0.97497 0.94690 1.00085 0.88297 1.22495 1.00200 0.95656 0.96668 1.23402 0.88581 0.94619 1.01746 1.62431 1.27120 1.00198 1.30806 1.19422 0.93513 0.90539 0.93176 1.22713 1.01958 0.97526 1.00749 1.22589 0.95795 0.89828 0.96899 1.67713 1.06899 1.40524 1.05161 1.22736 0.95114 0.93298 0.94240 1.22128 1.00165 0.93639 1.01064 1.23041 1.03924 0.91870 0.88975 0.92412 0.95551 0.95492 0.77728 0.89757 0.89552 0.92969 0.89362 0.84952 0.82908 0.82466 0.83983 0.87009 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.54 -14.53 9.28 -34.44 -0.32 -14.85 16 8 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 9 C 0.25 6.51 5.43 -5.19 -0.03 6.48 16 10 N -0.71 -14.41 5.52 -61.47 -0.34 -14.75 16 11 C 0.51 9.73 7.01 -10.98 -0.08 9.65 16 12 O -0.55 -12.97 15.24 5.55 0.08 -12.88 16 13 C -0.12 -1.64 3.38 -90.42 -0.31 -1.94 16 14 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 15 C -0.11 -1.26 6.58 -24.87 -0.16 -1.42 16 16 C 0.04 0.43 6.46 -1.74 -0.01 0.42 16 17 N -0.48 -6.00 5.30 -166.74 -0.88 -6.88 16 18 C 0.14 1.55 4.88 -83.61 -0.41 1.14 16 19 C -0.21 -2.05 8.01 -39.25 -0.31 -2.36 16 20 C 0.11 1.02 11.17 -17.61 -0.20 0.83 16 21 N -0.49 -5.45 10.36 -13.35 -0.14 -5.59 16 22 C 0.10 1.01 11.17 -17.61 -0.20 0.81 16 23 C -0.15 -1.56 10.06 -39.25 -0.39 -1.96 16 24 C 0.05 0.65 6.10 -2.75 -0.02 0.63 16 25 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.39 6.72 8.32 -40.82 -0.34 6.38 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.09 1.14 7.86 -51.93 -0.41 0.73 16 31 H 0.05 0.46 7.12 -51.93 -0.37 0.09 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.13 1.11 7.18 -52.48 -0.38 0.73 16 34 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.16 1.09 8.06 -52.49 -0.42 0.66 16 36 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.11 1.88 6.42 -51.93 -0.33 1.54 16 38 H 0.05 0.62 6.33 -51.93 -0.33 0.30 16 LS Contribution 319.56 15.07 4.82 4.82 Total: -1.00 -32.74 319.56 -8.35 -41.08 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -5.07 Total: 4.70 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -2.53 Total: -0.91 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: -0.62 Total: -52.38 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: 0.08 Total: -12.88 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.74 -8.35 -41.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638637707.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.418 kcal (2) G-P(sol) polarization free energy of solvation -32.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds