Wall clock time and date at job start Mon Mar 30 2020 02:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99900 * 2 1 4 4 H 1.48501 * 109.47019 * 270.00545 * 3 2 1 5 5 H 1.48496 * 109.47093 * 30.00445 * 3 2 1 6 6 H 1.48498 * 109.47088 * 150.00769 * 3 2 1 7 7 C 1.37874 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00350 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99934 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47204 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99824 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00143 * 359.97438 * 11 10 9 13 13 C 1.50704 * 119.99982 * 180.02562 * 11 10 9 14 14 H 1.09006 * 110.27155 * 302.08915 * 13 11 10 15 15 C 1.54592 * 110.31169 * 64.28126 * 13 11 10 16 16 C 1.54935 * 102.92201 * 140.87635 * 15 13 11 17 17 N 1.48811 * 103.34833 * 322.68932 * 16 15 13 18 18 C 1.39170 * 111.18086 * 159.50503 * 17 16 15 19 19 C 1.39472 * 120.86774 * 296.54702 * 18 17 16 20 20 C 1.37893 * 119.06847 * 179.73366 * 19 18 17 21 21 N 1.32000 * 120.83935 * 0.55447 * 20 19 18 22 22 C 1.31998 * 121.91041 * 359.71718 * 21 20 19 23 23 C 1.37895 * 120.84204 * 0.02562 * 22 21 20 24 24 C 1.47907 * 105.67497 * 38.98074 * 17 16 15 25 25 H 0.97005 * 119.99830 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47239 * 60.00015 * 9 7 2 27 27 H 1.09003 * 109.47031 * 300.00168 * 9 7 2 28 28 H 0.96999 * 120.00161 * 359.97438 * 10 9 7 29 29 H 1.09001 * 110.72344 * 259.23630 * 15 13 11 30 30 H 1.09004 * 110.72536 * 22.33763 * 15 13 11 31 31 H 1.09001 * 110.66647 * 81.02482 * 16 15 13 32 32 H 1.08997 * 110.66402 * 203.98412 * 16 15 13 33 33 H 1.08008 * 120.46650 * 359.97404 * 19 18 17 34 34 H 1.07995 * 119.58112 * 180.29381 * 20 19 18 35 35 H 1.08000 * 119.57371 * 179.97438 * 22 21 20 36 36 H 1.08001 * 120.46099 * 180.02562 * 23 22 21 37 37 H 1.09004 * 109.91240 * 215.45482 * 24 17 16 38 38 H 1.08995 * 109.92129 * 94.35668 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8833 0.0000 12 8 0.5613 -5.1049 0.0009 13 6 2.7330 -6.0288 0.0006 14 1 3.3914 -5.9633 -0.8657 15 6 3.5599 -6.0273 1.3068 16 6 3.6724 -7.5346 1.6473 17 7 2.3443 -8.0764 1.2512 18 6 2.4020 -9.4524 1.0509 19 6 3.1946 -9.9958 0.0400 20 6 3.2285 -11.3647 -0.1220 21 7 2.5153 -12.1562 0.6574 22 6 1.7491 -11.6804 1.6211 23 6 1.6639 -10.3236 1.8518 24 6 1.9827 -7.3735 0.0010 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 3.1567 -3.4354 -0.0009 29 1 4.5463 -5.5952 1.1384 30 1 3.0341 -5.4891 2.0955 31 1 4.4655 -8.0025 1.0641 32 1 3.8464 -7.6760 2.7140 33 1 3.7767 -9.3535 -0.6044 34 1 3.8431 -11.7946 -0.8991 35 1 1.1811 -12.3625 2.2363 36 1 1.0353 -9.9410 2.6423 37 1 0.9072 -7.1986 -0.0288 38 1 2.2860 -7.9683 -0.8605 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001638637707.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:51 Heat of formation + Delta-G solvation = -19.096499 kcal Electronic energy + Delta-G solvation = -20406.258294 eV Core-core repulsion = 17247.416096 eV Total energy + Delta-G solvation = -3158.842198 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.82755 -40.71084 -38.94474 -36.16940 -34.64967 -34.11878 -32.20114 -30.83759 -30.04223 -29.11329 -25.49625 -24.53806 -24.01968 -22.89867 -22.05850 -20.93684 -19.03532 -18.63958 -17.91969 -17.27162 -17.05457 -16.67052 -16.21518 -16.17929 -15.73055 -15.50250 -15.01705 -14.75375 -14.59293 -14.13915 -14.08663 -13.77167 -13.49730 -13.42533 -12.91760 -12.81295 -12.70680 -12.61836 -12.40875 -12.21756 -11.84185 -11.48845 -10.80899 -10.72867 -10.54000 -10.45843 -10.12254 -9.84736 -9.64091 -8.29461 -6.46256 0.12808 0.20887 1.43333 1.45656 1.56891 1.74302 2.30440 2.52495 2.74011 2.80896 3.05650 3.37481 3.58205 3.66978 3.85962 3.94449 4.05733 4.20370 4.21609 4.29794 4.34672 4.49830 4.60496 4.80122 4.83933 4.86706 4.88824 4.98015 5.06975 5.12929 5.23199 5.27967 5.48307 5.61328 5.64557 5.69795 5.84514 6.22618 6.65068 6.89750 7.00976 7.23255 7.48753 8.82819 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.051787 B = 0.003030 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.549041 B = 9237.998905 C = 9426.154260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.985 3.015 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.254 1.254 7 C -0.554 4.554 8 H 0.086 0.914 9 C 0.266 3.734 10 N -0.703 5.703 11 C 0.503 3.497 12 O -0.601 6.601 13 C -0.108 4.108 14 H 0.137 0.863 15 C -0.107 4.107 16 C 0.047 3.953 17 N -0.502 5.502 18 C 0.119 3.881 19 C -0.206 4.206 20 C 0.102 3.898 21 N -0.515 5.515 22 C 0.101 3.899 23 C -0.162 4.162 24 C 0.052 3.948 25 H 0.268 0.732 26 H -0.014 1.014 27 H -0.015 1.015 28 H 0.409 0.591 29 H 0.119 0.881 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.152 0.848 34 H 0.179 0.821 35 H 0.180 0.820 36 H 0.143 0.857 37 H 0.070 0.930 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.117 -19.240 1.616 23.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.808 3.192 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.177 1.177 7 C -0.592 4.592 8 H 0.104 0.896 9 C 0.143 3.857 10 N -0.352 5.352 11 C 0.290 3.710 12 O -0.483 6.483 13 C -0.130 4.130 14 H 0.155 0.845 15 C -0.145 4.145 16 C -0.078 4.078 17 N -0.224 5.224 18 C 0.016 3.984 19 C -0.227 4.227 20 C -0.054 4.054 21 N -0.225 5.225 22 C -0.055 4.055 23 C -0.182 4.182 24 C -0.075 4.075 25 H 0.077 0.923 26 H 0.004 0.996 27 H 0.003 0.997 28 H 0.245 0.755 29 H 0.138 0.862 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.169 0.831 34 H 0.196 0.804 35 H 0.197 0.803 36 H 0.161 0.839 37 H 0.088 0.912 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.775 -20.055 1.900 23.334 hybrid contribution 0.285 1.932 -0.470 2.009 sum 12.060 -18.123 1.431 21.816 Atomic orbital electron populations 1.70146 1.08351 1.28556 1.50046 1.26084 0.95754 1.03987 0.93884 0.85154 0.78537 0.76921 0.78598 1.19601 1.21127 1.17724 1.21620 0.94356 0.90472 1.52767 0.89608 1.18531 0.88739 0.84482 0.93931 1.46128 1.11156 1.05344 1.72548 1.21198 0.89574 0.85013 0.75235 1.90629 1.19674 1.85244 1.52767 1.22165 0.96394 0.91408 1.03001 0.84528 1.22536 1.01042 0.96587 0.94333 1.23454 0.88157 0.93571 1.02619 1.62325 1.28851 1.00961 1.30254 1.19566 0.94483 0.90039 0.94277 1.22852 1.01626 0.97873 1.00371 1.23047 0.95502 0.89870 0.97001 1.67769 1.07614 1.41259 1.05829 1.23085 0.94881 0.93392 0.94147 1.22261 1.00410 0.94113 1.01439 1.22879 1.01532 0.92481 0.90583 0.92282 0.99595 0.99739 0.75468 0.86230 0.92087 0.90494 0.88710 0.83065 0.80356 0.80267 0.83921 0.91172 0.90761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.24 13.29 21.45 0.28 -55.95 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.98 41.77 29.54 68.60 2.03 43.80 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 5 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.25 -9.91 7.11 99.48 0.71 -9.21 16 7 C -0.55 -29.72 9.28 25.60 0.24 -29.48 16 8 H 0.09 4.10 7.60 -2.91 -0.02 4.08 16 9 C 0.27 14.52 5.43 85.64 0.46 14.98 16 10 N -0.70 -28.77 5.52 -466.78 -2.58 -31.35 16 11 C 0.50 19.62 7.01 87.66 0.61 20.23 16 12 O -0.60 -29.99 15.24 -3.04 -0.05 -30.04 16 13 C -0.11 -2.69 3.38 -10.66 -0.04 -2.73 16 14 H 0.14 2.46 8.14 -2.38 -0.02 2.44 16 15 C -0.11 -2.12 6.58 31.80 0.21 -1.91 16 16 C 0.05 0.83 6.46 86.59 0.56 1.39 16 17 N -0.50 -11.84 5.30 -681.44 -3.61 -15.45 16 18 C 0.12 2.53 4.88 38.57 0.19 2.71 16 19 C -0.21 -3.51 8.01 22.49 0.18 -3.33 16 20 C 0.10 1.73 11.17 84.59 0.95 2.68 16 21 N -0.51 -10.49 10.36 -196.16 -2.03 -12.52 16 22 C 0.10 1.86 11.17 84.59 0.94 2.80 16 23 C -0.16 -3.27 10.06 22.49 0.23 -3.04 16 24 C 0.05 1.36 6.10 86.44 0.53 1.88 16 25 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 26 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 27 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 28 H 0.41 13.45 8.32 -92.71 -0.77 12.68 16 29 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 1.54 7.86 -2.38 -0.02 1.53 16 31 H 0.08 1.02 7.12 -2.39 -0.02 1.00 16 32 H 0.09 1.57 8.14 -2.39 -0.02 1.56 16 33 H 0.15 1.94 7.18 -2.91 -0.02 1.92 16 34 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 35 H 0.18 2.25 8.06 -2.91 -0.02 2.22 16 36 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 37 H 0.07 2.46 6.42 -2.38 -0.02 2.44 16 38 H 0.07 1.59 6.33 -2.39 -0.02 1.58 16 Total: -1.00 -75.47 319.56 -0.13 -75.60 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.30 Total: 19.13 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 5.52 Total: 6.78 kcal Atomic # 7 Polarization: -107.34 SS G_CDS: -7.93 Total: -115.27 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -0.05 Total: -30.04 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -75.47 -0.13 -75.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638637707.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.502 kcal (2) G-P(sol) polarization free energy of solvation -75.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds