Wall clock time and date at job start Mon Mar 30 2020 02:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00508 * 2 1 4 4 H 1.48501 * 109.47170 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46957 * 300.00169 * 3 2 1 6 6 H 1.48507 * 109.46789 * 59.99749 * 3 2 1 7 7 C 1.37880 * 119.99888 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00485 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99692 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47258 * 179.97438 * 9 7 2 11 11 C 1.50690 * 109.47254 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00471 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99949 * 180.02562 * 11 10 9 14 14 C 1.47021 * 125.64709 * 0.03764 * 13 11 10 15 15 C 1.54377 * 107.28683 * 181.05960 * 14 13 11 16 16 C 1.55156 * 102.92276 * 22.14253 * 15 14 13 17 17 H 1.08995 * 111.00507 * 82.63413 * 16 15 14 18 18 C 1.50696 * 111.00267 * 206.45551 * 16 15 14 19 19 C 1.38389 * 120.00395 * 75.84452 * 18 16 15 20 20 N 1.32131 * 119.99732 * 179.76398 * 19 18 16 21 21 C 1.32147 * 119.99866 * 0.50950 * 20 19 18 22 22 C 1.38348 * 120.00175 * 359.48868 * 21 20 19 23 23 N 1.32119 * 119.99892 * 255.86341 * 18 16 15 24 24 C 1.47426 * 125.65019 * 180.02562 * 13 11 10 25 25 H 0.97004 * 119.99728 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47269 * 59.99997 * 9 7 2 27 27 H 1.08999 * 109.47019 * 299.99430 * 9 7 2 28 28 H 1.09004 * 109.47172 * 59.99505 * 10 9 7 29 29 H 1.09004 * 109.47198 * 300.00324 * 10 9 7 30 30 H 1.08993 * 109.88683 * 300.44332 * 14 13 11 31 31 H 1.09003 * 109.88369 * 61.45894 * 14 13 11 32 32 H 1.08999 * 110.70084 * 263.79639 * 15 14 13 33 33 H 1.08997 * 110.75363 * 140.51278 * 15 14 13 34 34 H 1.08001 * 120.00093 * 0.02562 * 19 18 16 35 35 H 1.08002 * 120.00054 * 179.76916 * 21 20 19 36 36 H 1.08004 * 119.99521 * 180.26884 * 22 21 20 37 37 H 1.09001 * 110.36637 * 37.06597 * 24 13 11 38 38 H 1.09000 * 110.36643 * 274.74595 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4915 -4.9672 0.0012 12 8 0.2787 -4.9672 0.0011 13 7 2.1653 -6.1344 0.0018 14 6 3.6284 -6.2792 0.0027 15 6 3.9398 -7.7910 -0.0241 16 6 2.6392 -8.4029 -0.6085 17 1 2.6345 -8.3439 -1.6968 18 6 2.4566 -9.8256 -0.1465 19 6 2.0292 -10.0847 1.1440 20 7 1.8646 -11.3321 1.5475 21 6 2.1179 -12.3324 0.7219 22 6 2.5452 -12.0733 -0.5682 23 7 2.7050 -10.8256 -0.9733 24 6 1.5574 -7.4775 0.0019 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 2.8718 -3.6045 0.8905 29 1 2.8718 -3.6045 -0.8895 30 1 4.0490 -5.7991 -0.8807 31 1 4.0450 -5.8282 0.9034 32 1 4.1230 -8.1646 0.9834 33 1 4.7897 -7.9988 -0.6740 34 1 1.8260 -9.2672 1.8199 35 1 1.9870 -13.3521 1.0529 36 1 2.7480 -12.8909 -1.2442 37 1 0.6584 -7.4870 -0.6144 38 1 1.3235 -7.7879 1.0203 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646562440.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:07 Heat of formation + Delta-G solvation = -18.662315 kcal Electronic energy + Delta-G solvation = -20251.748931 eV Core-core repulsion = 17092.925560 eV Total energy + Delta-G solvation = -3158.823371 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.24942 -40.95543 -38.66322 -35.57892 -35.39296 -34.11640 -32.91461 -31.40271 -29.85527 -27.83126 -25.88824 -25.47630 -24.16879 -23.05905 -21.77418 -20.10501 -18.84860 -18.70683 -18.15596 -17.63987 -17.23985 -16.58926 -16.38108 -16.23260 -15.79303 -15.55372 -14.80007 -14.52196 -14.39437 -14.19597 -13.86813 -13.64057 -13.44584 -13.16558 -12.85004 -12.76818 -12.61096 -12.51096 -12.40107 -12.08003 -11.96742 -11.76239 -11.62220 -11.28094 -10.79065 -10.57462 -10.18638 -10.05861 -9.66995 -8.17722 -6.31785 -0.23743 0.12120 1.42873 1.44434 1.57741 1.65557 1.93473 2.43648 2.64961 2.97366 3.15496 3.26704 3.41134 3.51146 3.58064 3.88798 3.99856 4.01092 4.24366 4.27480 4.33904 4.45994 4.48646 4.53315 4.54486 4.68709 4.81217 4.85635 4.97995 5.06201 5.17513 5.35263 5.40761 5.50987 5.62609 5.85338 6.17446 6.29008 6.45874 6.78767 6.86968 7.21386 7.38600 8.95362 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.052338 B = 0.002924 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.855819 B = 9575.251803 C = 9819.656284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.009 4.009 3 Si 0.975 3.025 4 H -0.251 1.251 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.540 4.540 8 H 0.077 0.923 9 C 0.041 3.959 10 C -0.110 4.110 11 C 0.524 3.476 12 O -0.590 6.590 13 N -0.621 5.621 14 C 0.093 3.907 15 C -0.105 4.105 16 C -0.040 4.040 17 H 0.104 0.896 18 C 0.089 3.911 19 C 0.043 3.957 20 N -0.460 5.460 21 C 0.044 3.956 22 C 0.057 3.943 23 N -0.457 5.457 24 C 0.107 3.893 25 H 0.263 0.737 26 H -0.019 1.019 27 H -0.018 1.018 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.110 0.890 34 H 0.175 0.825 35 H 0.204 0.796 36 H 0.205 0.795 37 H 0.059 0.941 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.687 -25.817 0.075 28.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.799 3.201 4 H -0.174 1.174 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.578 4.578 8 H 0.096 0.904 9 C 0.003 3.997 10 C -0.150 4.150 11 C 0.315 3.685 12 O -0.471 6.471 13 N -0.356 5.356 14 C -0.028 4.028 15 C -0.143 4.143 16 C -0.060 4.060 17 H 0.122 0.878 18 C -0.051 4.051 19 C -0.116 4.116 20 N -0.175 5.175 21 C -0.116 4.116 22 C -0.103 4.103 23 N -0.172 5.172 24 C -0.016 4.016 25 H 0.071 0.929 26 H -0.001 1.001 27 H 0.000 1.000 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.128 0.872 34 H 0.192 0.808 35 H 0.220 0.780 36 H 0.222 0.778 37 H 0.077 0.923 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.874 -25.633 0.086 28.250 hybrid contribution -0.531 0.948 -0.024 1.087 sum 11.342 -24.685 0.062 27.167 Atomic orbital electron populations 1.70193 1.08374 1.27744 1.51601 1.26163 0.95727 1.04031 0.94670 0.85256 0.79366 0.77999 0.77513 1.17434 1.20684 1.20667 1.21732 0.94031 0.91452 1.50573 0.90440 1.18712 0.93737 0.92547 0.94663 1.21591 0.99153 0.89514 1.04703 1.21118 0.87324 0.85661 0.74351 1.90660 1.16635 1.87830 1.51931 1.48555 1.08880 1.04606 1.73541 1.22375 0.78491 0.97892 1.04058 1.22719 0.96386 0.92056 1.03127 1.21036 0.96096 0.87040 1.01842 0.87772 1.21772 0.96178 0.95454 0.91663 1.23766 0.96682 0.95474 0.95672 1.68516 1.11744 1.00418 1.36794 1.24412 0.94900 1.00738 0.91551 1.24404 0.94695 0.94692 0.96559 1.68252 1.12334 1.00695 1.35958 1.22339 0.96331 0.81649 1.01311 0.92873 1.00056 0.99970 0.87746 0.87849 0.89626 0.89254 0.89139 0.87169 0.80815 0.77975 0.77788 0.92267 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.11 13.29 21.45 0.28 -59.82 16 2 C -0.01 -0.51 5.46 84.66 0.46 -0.05 16 3 Si 0.97 44.38 29.54 68.60 2.03 46.41 16 4 H -0.25 -10.46 7.11 99.48 0.71 -9.75 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 7 C -0.54 -30.83 9.11 25.60 0.23 -30.60 16 8 H 0.08 4.01 7.74 -2.91 -0.02 3.98 16 9 C 0.04 2.32 4.26 29.85 0.13 2.44 16 10 C -0.11 -4.48 4.83 29.85 0.14 -4.34 16 11 C 0.52 21.08 7.85 87.65 0.69 21.77 16 12 O -0.59 -30.13 16.24 -3.02 -0.05 -30.18 16 13 N -0.62 -17.61 3.33 -811.73 -2.70 -20.31 16 14 C 0.09 1.69 6.49 86.75 0.56 2.25 16 15 C -0.10 -1.38 6.40 31.80 0.20 -1.17 16 16 C -0.04 -0.70 3.42 -10.15 -0.03 -0.74 16 17 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 18 C 0.09 1.60 5.89 42.55 0.25 1.85 16 19 C 0.04 0.77 10.17 84.68 0.86 1.63 16 20 N -0.46 -8.39 10.50 -195.22 -2.05 -10.43 16 21 C 0.04 0.53 11.22 84.67 0.95 1.48 16 22 C 0.06 0.67 11.22 84.67 0.95 1.62 16 23 N -0.46 -8.10 10.42 -183.30 -1.91 -10.01 16 24 C 0.11 2.60 6.22 86.85 0.54 3.14 16 25 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 26 H -0.02 -1.22 8.10 -2.39 -0.02 -1.24 16 27 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 28 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 29 H 0.10 3.70 8.14 -2.38 -0.02 3.68 16 30 H 0.09 1.40 8.14 -2.39 -0.02 1.39 16 31 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.09 1.02 7.93 -2.39 -0.02 1.00 16 33 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.17 2.81 6.26 -2.91 -0.02 2.79 16 35 H 0.20 0.86 8.06 -2.91 -0.02 0.83 16 36 H 0.21 0.79 8.06 -2.91 -0.02 0.77 16 37 H 0.06 1.72 8.04 -2.39 -0.02 1.70 16 38 H 0.08 1.76 5.83 -2.39 -0.01 1.75 16 Total: -1.00 -82.67 322.46 2.60 -80.07 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: 1.06 Total: 4.99 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 5.94 Total: -0.72 kcal Atomic # 7 Polarization: -94.19 SS G_CDS: -6.38 Total: -100.57 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.05 Total: -30.18 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -82.67 2.60 -80.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646562440.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.408 kcal (2) G-P(sol) polarization free energy of solvation -82.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds