Wall clock time and date at job start Mon Mar 30 2020 02:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 119.99521 * 2 1 4 4 H 1.48506 * 109.46974 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47133 * 300.00138 * 3 2 1 6 6 H 1.48500 * 109.47031 * 60.00346 * 3 2 1 7 7 C 1.37868 * 120.00428 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00516 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00051 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47233 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46895 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00492 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99948 * 179.97438 * 11 10 9 14 14 C 1.47025 * 125.64700 * 0.03707 * 13 11 10 15 15 C 1.54330 * 107.27180 * 178.90716 * 14 13 11 16 16 C 1.55163 * 102.94033 * 337.80775 * 15 14 13 17 17 H 1.08997 * 111.03486 * 277.41126 * 16 15 14 18 18 C 1.50696 * 111.00087 * 153.57549 * 16 15 14 19 19 C 1.38383 * 120.00355 * 284.19360 * 18 16 15 20 20 N 1.32132 * 119.99950 * 179.77254 * 19 18 16 21 21 C 1.32153 * 119.99715 * 0.50288 * 20 19 18 22 22 C 1.38349 * 120.00256 * 359.49726 * 21 20 19 23 23 N 1.32126 * 119.99980 * 104.21790 * 18 16 15 24 24 C 1.47422 * 125.65149 * 179.97438 * 13 11 10 25 25 H 0.97003 * 120.00843 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47575 * 59.99834 * 9 7 2 27 27 H 1.09001 * 109.46865 * 299.99726 * 9 7 2 28 28 H 1.08990 * 109.47300 * 59.99745 * 10 9 7 29 29 H 1.09001 * 109.46801 * 299.99556 * 10 9 7 30 30 H 1.08999 * 109.88225 * 298.32132 * 14 13 11 31 31 H 1.08999 * 109.88230 * 59.48794 * 14 13 11 32 32 H 1.08993 * 110.72008 * 219.44520 * 15 14 13 33 33 H 1.08998 * 110.71979 * 96.16666 * 15 14 13 34 34 H 1.08001 * 120.00352 * 0.02562 * 19 18 16 35 35 H 1.08002 * 120.00212 * 179.76838 * 21 20 19 36 36 H 1.07994 * 119.99641 * 180.22722 * 22 21 20 37 37 H 1.09000 * 110.36757 * 85.32168 * 24 13 11 38 38 H 1.09005 * 110.46130 * 323.04963 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2455 -3.6619 -0.0015 11 6 1.4920 -4.9671 -0.0033 12 8 0.2792 -4.9672 -0.0041 13 7 2.1659 -6.1342 -0.0039 14 6 3.6290 -6.2789 -0.0022 15 6 3.9401 -7.7903 0.0244 16 6 2.6390 -8.4026 0.6073 17 1 2.6323 -8.3437 1.6956 18 6 2.4574 -9.8253 0.1450 19 6 2.0323 -10.0845 -1.1462 20 7 1.8775 -11.3322 -1.5528 21 6 2.1189 -12.3322 -0.7233 22 6 2.5439 -12.0731 0.5676 23 7 2.7035 -10.8254 0.9727 24 6 1.5582 -7.4774 -0.0051 25 1 -0.4851 0.8400 0.0004 26 1 0.6248 -2.5563 -0.8919 27 1 0.6242 -2.5574 0.8880 28 1 2.8714 -3.6046 0.8889 29 1 2.8727 -3.6038 -0.8910 30 1 4.0469 -5.8302 -0.9034 31 1 4.0480 -5.7986 0.8820 32 1 4.7892 -7.9978 0.6753 33 1 4.1244 -8.1638 -0.9829 34 1 1.8311 -9.2672 -1.8228 35 1 1.9888 -13.3520 -1.0544 36 1 2.7447 -12.8905 1.2442 37 1 1.3262 -7.7879 -1.0238 38 1 0.6573 -7.4885 0.6085 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646562441.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:11 Heat of formation + Delta-G solvation = 6.901327 kcal Electronic energy + Delta-G solvation = -20250.735600 eV Core-core repulsion = 17093.020752 eV Total energy + Delta-G solvation = -3157.714848 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.57654 -39.69958 -37.41855 -34.68716 -33.49094 -33.14511 -31.07765 -30.45165 -28.92012 -26.08728 -25.06641 -24.46392 -23.11979 -21.43571 -20.85470 -18.76301 -18.00507 -17.52457 -17.01374 -16.41310 -15.88680 -15.59536 -15.11647 -14.85997 -14.44231 -14.25442 -14.05033 -13.55520 -13.02846 -12.99226 -12.55336 -12.15406 -12.14632 -11.93814 -11.89152 -11.67778 -11.36425 -11.12504 -11.07796 -10.94077 -10.57777 -9.95728 -9.66684 -9.57434 -9.41995 -9.19588 -9.02570 -8.46833 -8.31862 -5.95961 -4.00397 0.37296 0.76415 3.10187 3.18742 3.28223 3.32777 3.39950 3.43141 3.65399 3.89461 4.07747 4.26414 4.35086 4.47978 4.51739 4.68121 4.87203 4.98985 5.01993 5.09222 5.25818 5.35623 5.39103 5.48790 5.62008 5.71271 5.79040 5.88821 5.97930 6.21276 6.23490 6.46298 6.87648 6.90898 7.40762 7.74788 7.78854 7.86022 8.07157 8.38120 8.70245 9.08174 9.63244 11.15059 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.052348 B = 0.002923 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.753100 B = 9575.910056 C = 9819.375856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.123 4.123 11 C 0.527 3.473 12 O -0.530 6.530 13 N -0.631 5.631 14 C 0.104 3.896 15 C -0.119 4.119 16 C -0.053 4.053 17 H 0.109 0.891 18 C 0.099 3.901 19 C 0.054 3.946 20 N -0.434 5.434 21 C 0.040 3.960 22 C 0.054 3.946 23 N -0.435 5.435 24 C 0.111 3.889 25 H 0.260 0.740 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.172 0.828 35 H 0.170 0.830 36 H 0.171 0.829 37 H 0.068 0.932 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.416 -24.407 -0.093 26.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.163 4.163 11 C 0.318 3.682 12 O -0.405 6.405 13 N -0.368 5.368 14 C -0.019 4.019 15 C -0.157 4.157 16 C -0.073 4.073 17 H 0.127 0.873 18 C -0.042 4.042 19 C -0.106 4.106 20 N -0.148 5.148 21 C -0.119 4.119 22 C -0.106 4.106 23 N -0.150 5.150 24 C -0.012 4.012 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.189 0.811 35 H 0.187 0.813 36 H 0.188 0.812 37 H 0.086 0.914 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.543 -24.190 -0.106 25.654 hybrid contribution 0.495 0.701 0.024 0.858 sum 9.037 -23.489 -0.082 25.168 Atomic orbital electron populations 1.70005 1.06063 1.26488 1.50277 1.25027 0.94822 0.99247 0.95321 0.86537 0.80001 0.83844 0.77587 1.19741 1.21021 1.21015 1.21243 0.92953 0.90950 1.51263 0.92539 1.18928 0.93208 0.89395 0.98661 1.21856 1.00642 0.91376 1.02453 1.21377 0.88143 0.84356 0.74290 1.90687 1.14263 1.86858 1.48701 1.48701 1.06738 1.05211 1.76173 1.21990 0.81523 0.95739 1.02688 1.22721 0.96726 0.94299 1.01953 1.21228 0.96500 0.87261 1.02356 0.87326 1.21904 0.95191 0.95567 0.91548 1.23725 0.96170 0.95132 0.95528 1.68508 1.10771 0.99863 1.35682 1.23811 0.96542 0.99839 0.91745 1.23800 0.96079 0.94768 0.95986 1.68263 1.11545 0.99693 1.35499 1.22192 0.96109 0.82251 1.00684 0.92991 0.95791 0.95800 0.90203 0.90223 0.90773 0.90804 0.89363 0.90397 0.81066 0.81310 0.81233 0.91423 0.89960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.50 13.29 55.43 0.74 -26.76 16 2 C 0.06 1.67 5.46 -17.83 -0.10 1.57 16 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.53 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.04 0.96 4.26 -27.88 -0.12 0.84 16 10 C -0.12 -2.51 4.83 -27.88 -0.13 -2.65 16 11 C 0.53 10.31 7.85 -10.99 -0.09 10.23 16 12 O -0.53 -12.69 16.24 5.55 0.09 -12.60 16 13 N -0.63 -9.08 3.33 -170.53 -0.57 -9.64 16 14 C 0.10 1.07 6.49 -3.06 -0.02 1.05 16 15 C -0.12 -0.95 6.40 -24.89 -0.16 -1.11 16 16 C -0.05 -0.50 3.42 -89.63 -0.31 -0.81 16 17 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 18 C 0.10 0.95 5.89 -82.41 -0.49 0.47 16 19 C 0.05 0.52 10.17 -17.37 -0.18 0.34 16 20 N -0.43 -4.28 10.50 -13.06 -0.14 -4.42 16 21 C 0.04 0.29 11.22 -17.37 -0.19 0.10 16 22 C 0.05 0.39 11.23 -17.37 -0.20 0.19 16 23 N -0.44 -4.28 10.42 -9.29 -0.10 -4.38 16 24 C 0.11 1.35 6.22 -2.54 -0.02 1.33 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 28 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 29 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.56 7.93 -51.93 -0.41 0.15 16 34 H 0.17 1.42 6.27 -52.49 -0.33 1.09 16 35 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.17 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.07 0.75 5.83 -51.93 -0.30 0.44 16 38 H 0.08 1.12 8.04 -51.93 -0.42 0.71 16 LS Contribution 322.45 15.07 4.86 4.86 Total: -1.00 -35.89 322.45 -7.67 -43.55 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: -5.23 Total: -3.58 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -2.30 Total: -3.66 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: -0.06 Total: -45.20 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.09 Total: -12.60 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.89 -7.67 -43.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646562441.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.452 kcal (2) G-P(sol) polarization free energy of solvation -35.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds