Wall clock time and date at job start Mon Mar 30 2020 01:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00221 * 2 1 4 4 C 1.53007 * 109.47141 * 179.97438 * 3 2 1 5 5 S 1.81397 * 109.47166 * 179.97438 * 4 3 2 6 6 C 1.81401 * 102.99785 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47149 * 179.97438 * 6 5 4 8 8 C 1.52992 * 109.47482 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.47859 * 179.97438 * 8 7 6 10 10 C 1.47485 * 110.99831 * 265.97768 * 9 8 7 11 11 C 1.53513 * 87.92676 * 221.28894 * 10 9 8 12 12 O 1.42907 * 114.17322 * 272.37630 * 11 10 9 13 13 C 1.50699 * 114.34401 * 139.68517 * 11 10 9 14 14 H 1.08003 * 119.99938 * 266.07927 * 13 11 10 15 15 C 1.37878 * 120.00170 * 86.07240 * 13 11 10 16 16 N 1.31507 * 120.00021 * 0.02562 * 15 13 11 17 17 Si 1.86795 * 119.99781 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47550 * 60.00205 * 17 15 13 19 19 H 1.48507 * 109.46965 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47277 * 299.99910 * 17 15 13 21 21 C 1.47470 * 111.00419 * 170.00112 * 9 8 7 22 22 H 1.08996 * 109.47683 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47444 * 300.00990 * 1 2 3 24 24 H 1.09002 * 109.46800 * 60.00242 * 1 2 3 25 25 H 1.08991 * 109.47654 * 59.99594 * 3 2 1 26 26 H 1.09000 * 109.47113 * 299.99169 * 3 2 1 27 27 H 1.09004 * 109.46969 * 59.99608 * 4 3 2 28 28 H 1.09000 * 109.46704 * 300.00112 * 4 3 2 29 29 H 1.09002 * 109.47085 * 299.99903 * 6 5 4 30 30 H 1.09001 * 109.47417 * 60.00029 * 6 5 4 31 31 H 1.09002 * 109.47153 * 299.99990 * 7 6 5 32 32 H 1.08998 * 109.47533 * 59.99620 * 7 6 5 33 33 H 1.09002 * 109.47103 * 300.00247 * 8 7 6 34 34 H 1.09001 * 109.47066 * 60.00169 * 8 7 6 35 35 H 1.08995 * 113.47551 * 336.04949 * 10 9 8 36 36 H 1.08998 * 113.47679 * 106.53039 * 10 9 8 37 37 H 0.96695 * 113.99593 * 273.84112 * 12 11 10 38 38 H 0.96996 * 120.00166 * 179.97438 * 16 15 13 39 39 H 1.09001 * 113.47605 * 253.46684 * 21 9 8 40 40 H 1.09000 * 113.48074 * 23.88122 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 16 4.2734 2.8416 -0.0001 6 6 6.0541 2.4954 0.0016 7 6 6.8300 3.8139 0.0004 8 6 8.3318 3.5220 0.0025 9 7 9.0770 4.7880 0.0008 10 6 9.4297 5.1918 -1.3731 11 6 10.8071 5.6075 -0.8378 12 8 10.8642 6.9489 -0.3481 13 6 11.9581 5.2557 -1.7447 14 1 12.4949 4.3295 -1.6014 15 6 12.3257 6.1161 -2.7574 16 7 11.6723 7.2439 -2.9316 17 14 13.7520 5.6795 -3.8819 18 1 13.4568 4.4047 -4.5838 19 1 13.9443 6.7619 -4.8804 20 1 14.9892 5.5255 -3.0752 21 6 10.5133 4.5563 0.2417 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5140 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.6887 1.8464 0.8898 26 1 1.6887 1.8463 -0.8901 27 1 3.8575 0.6433 -0.8891 28 1 3.8567 0.6437 0.8909 29 1 6.3119 1.9223 0.8922 30 1 6.3134 1.9209 -0.8878 31 1 6.5721 4.3866 -0.8904 32 1 6.5709 4.3889 0.8895 33 1 8.5895 2.9495 0.8936 34 1 8.5914 2.9470 -0.8864 35 1 9.4698 4.3581 -2.0740 36 1 8.8380 6.0282 -1.7452 37 1 11.0494 7.6089 -1.0301 38 1 11.9312 7.8494 -3.6438 39 1 10.8400 4.8541 1.2381 40 1 10.8424 3.5526 -0.0273 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658381620.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:03 Heat of formation + Delta-G solvation = -68.485667 kcal Electronic energy + Delta-G solvation = -18617.972232 eV Core-core repulsion = 15560.139559 eV Total energy + Delta-G solvation = -3057.832673 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.18964 -38.29357 -35.01224 -33.24887 -32.04039 -31.93033 -28.40928 -26.86680 -25.85338 -24.90328 -23.70919 -22.57288 -20.75997 -18.62025 -17.28166 -17.13558 -16.56739 -16.16412 -15.54439 -15.29262 -15.05808 -14.90329 -14.30091 -14.18427 -13.88269 -13.73748 -12.87992 -12.81881 -12.34018 -12.11919 -12.04517 -11.80062 -11.72098 -11.55073 -11.34655 -11.10841 -10.96267 -10.55260 -10.52509 -10.23757 -10.10783 -10.08491 -9.92141 -9.26339 -8.65138 -8.19406 -7.89768 -7.84120 -6.27450 -4.37402 1.30994 2.39409 3.20195 3.25876 3.28059 3.52846 4.24065 4.52598 4.55589 4.66436 4.88131 4.93783 4.94819 4.95338 5.00897 5.23147 5.25670 5.33567 5.37907 5.40755 5.44534 5.64969 5.90171 5.99650 6.04125 6.13348 6.30040 6.42401 6.47929 6.68180 6.69338 7.05237 7.16534 7.35301 7.76004 7.94771 8.03259 8.64518 9.32681 9.69009 10.78587 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.039000 B = 0.002547 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.785325 B =10988.957823 C =11245.895761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.392 6.392 3 C 0.079 3.921 4 C -0.093 4.093 5 S -0.250 6.250 6 C -0.077 4.077 7 C -0.092 4.092 8 C 0.024 3.976 9 N -0.472 5.472 10 C -0.021 4.021 11 C 0.247 3.753 12 O -0.570 6.570 13 C -0.535 4.535 14 H 0.065 0.935 15 C 0.070 3.930 16 N -0.898 5.898 17 Si 0.905 3.095 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.274 1.274 21 C 0.004 3.996 22 H 0.087 0.913 23 H 0.043 0.957 24 H 0.043 0.957 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.041 0.959 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.390 0.610 38 H 0.272 0.728 39 H 0.071 0.929 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.591 -11.559 3.942 20.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.311 6.311 3 C 0.001 3.999 4 C -0.242 4.242 5 S -0.023 6.023 6 C -0.226 4.226 7 C -0.132 4.132 8 C -0.107 4.107 9 N -0.194 5.194 10 C -0.151 4.151 11 C 0.205 3.795 12 O -0.383 6.383 13 C -0.573 4.573 14 H 0.084 0.916 15 C -0.132 4.132 16 N -0.538 5.538 17 Si 0.732 3.268 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.125 4.125 22 H 0.106 0.894 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.246 0.754 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.558 -10.452 4.829 20.997 hybrid contribution 1.510 -1.659 -1.746 2.842 sum -16.048 -12.111 3.083 20.340 Atomic orbital electron populations 1.22762 0.80470 1.02928 1.00262 1.87855 1.20115 1.27618 1.95541 1.22112 0.91281 0.84906 1.01559 1.23197 0.97241 0.97606 1.06120 1.86863 1.06083 1.11175 1.98178 1.23424 0.91568 1.02609 1.04962 1.21173 0.93863 0.94111 1.04008 1.22617 0.93629 0.93917 1.00523 1.68854 1.08997 1.22252 1.19327 1.24757 1.01144 0.99845 0.89307 1.19357 0.90302 0.81268 0.88562 1.86030 1.94120 1.17165 1.40940 1.21542 1.16153 1.05950 1.13698 0.91638 1.25072 0.96489 0.94660 0.96959 1.69282 1.40675 1.10651 1.33236 0.86446 0.82225 0.78150 0.79976 1.20073 1.20980 1.19931 1.24050 0.88323 0.98943 1.01175 0.89409 0.93853 0.93833 0.92218 0.92194 0.89301 0.89318 0.89975 0.90015 0.90943 0.90415 0.91829 0.94112 0.92317 0.91340 0.75427 0.91739 0.91084 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.80 10.70 -35.23 -0.38 -4.18 16 3 C 0.08 0.71 5.95 37.16 0.22 0.94 16 4 C -0.09 -0.90 6.31 37.16 0.23 -0.67 16 5 S -0.25 -2.96 21.74 -107.50 -2.34 -5.29 16 6 C -0.08 -0.90 5.94 37.16 0.22 -0.68 16 7 C -0.09 -1.34 5.55 -26.74 -0.15 -1.49 16 8 C 0.02 0.40 4.82 -3.83 -0.02 0.38 16 9 N -0.47 -9.86 6.33 -244.63 -1.55 -11.40 16 10 C -0.02 -0.49 7.13 -7.54 -0.05 -0.55 16 11 C 0.25 6.29 1.57 -91.24 -0.14 6.15 16 12 O -0.57 -15.64 13.53 -35.23 -0.48 -16.12 16 13 C -0.54 -14.25 8.69 -34.44 -0.30 -14.55 16 14 H 0.07 1.70 7.81 -52.48 -0.41 1.29 16 15 C 0.07 1.85 5.39 -17.82 -0.10 1.75 16 16 N -0.90 -24.11 11.02 55.43 0.61 -23.50 16 17 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 21 C 0.00 0.09 7.09 -7.55 -0.05 0.03 16 22 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 24 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.09 0.84 8.14 -51.92 -0.42 0.42 16 28 H 0.09 0.82 8.14 -51.92 -0.42 0.40 16 29 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 30 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 34 H 0.04 0.66 7.30 -51.93 -0.38 0.29 16 35 H 0.06 1.33 7.38 -51.93 -0.38 0.94 16 36 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 37 H 0.39 10.84 6.33 45.56 0.29 11.12 16 38 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 40 H 0.06 1.28 7.87 -51.93 -0.41 0.87 16 LS Contribution 342.56 15.07 5.16 5.16 Total: -1.00 -28.33 342.56 -9.35 -37.69 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -6.34 Total: 9.74 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: 0.98 Total: -7.37 kcal Atomic # 7 Polarization: -33.97 SS G_CDS: -0.94 Total: -34.91 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.85 Total: -20.29 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: -2.96 SS G_CDS: -2.34 Total: -5.29 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.33 -9.35 -37.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658381620.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.798 kcal (2) G-P(sol) polarization free energy of solvation -28.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds