Wall clock time and date at job start Mon Mar 30 2020 01:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00221 * 2 1 4 4 C 1.53007 * 109.47141 * 179.97438 * 3 2 1 5 5 S 1.81397 * 109.47166 * 179.97438 * 4 3 2 6 6 C 1.81401 * 102.99785 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47149 * 179.97438 * 6 5 4 8 8 C 1.52992 * 109.47482 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.47859 * 179.97438 * 8 7 6 10 10 C 1.47485 * 110.99831 * 265.97768 * 9 8 7 11 11 C 1.53513 * 87.92676 * 221.28894 * 10 9 8 12 12 O 1.42907 * 114.17322 * 272.37630 * 11 10 9 13 13 C 1.50699 * 114.34401 * 139.68517 * 11 10 9 14 14 H 1.08003 * 119.99938 * 266.07927 * 13 11 10 15 15 C 1.37878 * 120.00170 * 86.07240 * 13 11 10 16 16 N 1.31507 * 120.00021 * 0.02562 * 15 13 11 17 17 Si 1.86795 * 119.99781 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47550 * 60.00205 * 17 15 13 19 19 H 1.48507 * 109.46965 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47277 * 299.99910 * 17 15 13 21 21 C 1.47470 * 111.00419 * 170.00112 * 9 8 7 22 22 H 1.08996 * 109.47683 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47444 * 300.00990 * 1 2 3 24 24 H 1.09002 * 109.46800 * 60.00242 * 1 2 3 25 25 H 1.08991 * 109.47654 * 59.99594 * 3 2 1 26 26 H 1.09000 * 109.47113 * 299.99169 * 3 2 1 27 27 H 1.09004 * 109.46969 * 59.99608 * 4 3 2 28 28 H 1.09000 * 109.46704 * 300.00112 * 4 3 2 29 29 H 1.09002 * 109.47085 * 299.99903 * 6 5 4 30 30 H 1.09001 * 109.47417 * 60.00029 * 6 5 4 31 31 H 1.09002 * 109.47153 * 299.99990 * 7 6 5 32 32 H 1.08998 * 109.47533 * 59.99620 * 7 6 5 33 33 H 1.09002 * 109.47103 * 300.00247 * 8 7 6 34 34 H 1.09001 * 109.47066 * 60.00169 * 8 7 6 35 35 H 1.08995 * 113.47551 * 336.04949 * 10 9 8 36 36 H 1.08998 * 113.47679 * 106.53039 * 10 9 8 37 37 H 0.96695 * 113.99593 * 273.84112 * 12 11 10 38 38 H 0.96996 * 120.00166 * 179.97438 * 16 15 13 39 39 H 1.09001 * 113.47605 * 253.46684 * 21 9 8 40 40 H 1.09000 * 113.48074 * 23.88122 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 16 4.2734 2.8416 -0.0001 6 6 6.0541 2.4954 0.0016 7 6 6.8300 3.8139 0.0004 8 6 8.3318 3.5220 0.0025 9 7 9.0770 4.7880 0.0008 10 6 9.4297 5.1918 -1.3731 11 6 10.8071 5.6075 -0.8378 12 8 10.8642 6.9489 -0.3481 13 6 11.9581 5.2557 -1.7447 14 1 12.4949 4.3295 -1.6014 15 6 12.3257 6.1161 -2.7574 16 7 11.6723 7.2439 -2.9316 17 14 13.7520 5.6795 -3.8819 18 1 13.4568 4.4047 -4.5838 19 1 13.9443 6.7619 -4.8804 20 1 14.9892 5.5255 -3.0752 21 6 10.5133 4.5563 0.2417 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5140 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.6887 1.8464 0.8898 26 1 1.6887 1.8463 -0.8901 27 1 3.8575 0.6433 -0.8891 28 1 3.8567 0.6437 0.8909 29 1 6.3119 1.9223 0.8922 30 1 6.3134 1.9209 -0.8878 31 1 6.5721 4.3866 -0.8904 32 1 6.5709 4.3889 0.8895 33 1 8.5895 2.9495 0.8936 34 1 8.5914 2.9470 -0.8864 35 1 9.4698 4.3581 -2.0740 36 1 8.8380 6.0282 -1.7452 37 1 11.0494 7.6089 -1.0301 38 1 11.9312 7.8494 -3.6438 39 1 10.8400 4.8541 1.2381 40 1 10.8424 3.5526 -0.0273 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658381620.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:02 Heat of formation + Delta-G solvation = -89.287817 kcal Electronic energy + Delta-G solvation = -18618.874281 eV Core-core repulsion = 15560.139559 eV Total energy + Delta-G solvation = -3058.734722 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.94631 -38.94232 -36.70719 -34.75537 -34.07941 -32.63192 -30.00707 -27.62538 -27.33939 -26.70002 -24.83829 -23.74967 -22.07617 -20.50327 -19.23959 -17.83862 -17.25480 -17.17784 -17.15201 -16.66349 -16.55199 -15.96671 -15.78714 -15.53394 -15.25571 -14.81056 -14.28353 -13.99639 -13.89815 -13.45228 -13.38302 -13.06798 -12.85070 -12.79877 -12.68735 -12.59102 -12.30009 -12.24698 -12.14460 -11.85934 -11.53247 -11.12796 -11.01467 -10.73812 -10.63271 -10.08343 -9.66846 -8.76437 -8.25152 -6.43162 0.44420 1.43561 1.45079 1.51926 1.53361 2.37280 2.91247 2.95540 3.19146 3.79300 3.82253 3.86125 3.89783 4.09016 4.12837 4.27307 4.31675 4.38779 4.47355 4.47798 4.49151 4.54530 4.60968 4.65350 4.68248 4.70324 4.83081 4.91921 4.97952 5.15068 5.21833 5.39344 5.50813 5.75304 5.96794 6.08010 6.34782 6.62903 7.29956 7.55975 8.79975 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.039000 B = 0.002547 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.785325 B =10988.957823 C =11245.895761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.080 3.920 4 C -0.081 4.081 5 S -0.281 6.281 6 C -0.066 4.066 7 C -0.083 4.083 8 C 0.024 3.976 9 N -0.479 5.479 10 C -0.009 4.009 11 C 0.215 3.785 12 O -0.585 6.585 13 C -0.557 4.557 14 H 0.068 0.932 15 C 0.024 3.976 16 N -0.921 5.921 17 Si 0.970 3.030 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.271 1.271 21 C 0.014 3.986 22 H 0.101 0.899 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.046 0.954 35 H 0.062 0.938 36 H 0.046 0.954 37 H 0.383 0.617 38 H 0.274 0.726 39 H 0.070 0.930 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.931 -13.431 3.949 21.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C 0.003 3.997 4 C -0.229 4.229 5 S -0.055 6.055 6 C -0.215 4.215 7 C -0.122 4.122 8 C -0.106 4.106 9 N -0.201 5.201 10 C -0.139 4.139 11 C 0.174 3.826 12 O -0.397 6.397 13 C -0.595 4.595 14 H 0.086 0.914 15 C -0.176 4.176 16 N -0.562 5.562 17 Si 0.795 3.205 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.196 1.196 21 C -0.115 4.115 22 H 0.119 0.881 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.110 0.890 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.109 0.891 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.238 0.762 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.914 -12.338 4.850 22.286 hybrid contribution 1.532 -1.090 -1.710 2.542 sum -16.381 -13.428 3.140 21.413 Atomic orbital electron populations 1.22969 0.78890 1.04150 1.01065 1.87816 1.21906 1.27779 1.95681 1.22081 0.90859 0.84950 1.01817 1.23163 0.97532 0.95686 1.06567 1.86983 1.06629 1.13585 1.98277 1.23287 0.90951 1.01001 1.06272 1.21012 0.93048 0.95442 1.02731 1.22690 0.94095 0.92040 1.01799 1.68762 1.08830 1.25128 1.17426 1.24506 0.99586 0.99236 0.90535 1.19782 0.91234 0.81009 0.90566 1.86010 1.94294 1.18200 1.41149 1.21823 1.16934 1.06349 1.14372 0.91389 1.25866 0.98857 0.94546 0.98301 1.69368 1.41810 1.11338 1.33675 0.85423 0.79014 0.78052 0.78028 1.19315 1.20664 1.19632 1.23962 0.88922 0.98579 1.00001 0.88058 0.92986 0.93104 0.91869 0.92084 0.88992 0.88676 0.88259 0.89095 0.92750 0.91231 0.89667 0.93524 0.91961 0.93510 0.76192 0.91568 0.91137 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.41 -7.33 10.70 -148.98 -1.59 -8.92 16 3 C 0.08 1.34 5.95 71.98 0.43 1.77 16 4 C -0.08 -1.43 6.31 71.98 0.45 -0.98 16 5 S -0.28 -6.30 21.74 -56.49 -1.23 -7.52 16 6 C -0.07 -1.43 5.94 71.98 0.43 -1.00 16 7 C -0.08 -2.32 5.55 30.59 0.17 -2.15 16 8 C 0.02 0.75 4.82 86.30 0.42 1.16 16 9 N -0.48 -19.64 6.33 -928.25 -5.88 -25.52 16 10 C -0.01 -0.42 7.13 83.58 0.60 0.18 16 11 C 0.22 11.03 1.57 -11.19 -0.02 11.01 16 12 O -0.58 -32.76 13.53 -148.98 -2.02 -34.77 16 13 C -0.56 -29.58 8.69 25.60 0.22 -29.36 16 14 H 0.07 3.47 7.81 -2.91 -0.02 3.45 16 15 C 0.02 1.25 5.39 84.66 0.46 1.71 16 16 N -0.92 -49.98 11.02 21.45 0.24 -49.75 16 17 Si 0.97 41.26 29.54 68.60 2.03 43.28 16 18 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 19 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 20 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 21 C 0.01 0.61 7.09 83.58 0.59 1.20 16 22 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 24 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.05 1.70 8.14 -2.39 -0.02 1.69 16 32 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.08 2.30 8.08 -2.39 -0.02 2.29 16 34 H 0.05 1.42 7.30 -2.39 -0.02 1.40 16 35 H 0.06 2.80 7.38 -2.39 -0.02 2.79 16 36 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.38 21.98 6.33 -74.06 -0.47 21.51 16 38 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 39 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 40 H 0.08 3.14 7.87 -2.39 -0.02 3.12 16 Total: -1.00 -59.97 342.56 -2.93 -62.90 By element: Atomic # 1 Polarization: 34.70 SS G_CDS: 0.53 Total: 35.23 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: 4.99 Total: -14.92 kcal Atomic # 7 Polarization: -69.63 SS G_CDS: -5.64 Total: -75.27 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: -3.61 Total: -43.70 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.28 kcal Atomic # 16 Polarization: -6.30 SS G_CDS: -1.23 Total: -7.52 kcal Total: -59.97 -2.93 -62.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658381620.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.390 kcal (2) G-P(sol) polarization free energy of solvation -59.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds