Wall clock time and date at job start Mon Mar 30 2020 01:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34228 * 117.00441 * 2 1 4 4 O 1.20829 * 119.99391 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00278 * 179.97438 * 3 2 1 6 6 C 1.53783 * 113.61491 * 179.97438 * 5 3 2 7 7 C 1.53774 * 87.07869 * 139.98145 * 6 5 3 8 8 N 1.46506 * 113.61380 * 89.11776 * 7 6 5 9 9 C 1.39680 * 119.99793 * 156.52860 * 8 7 6 10 10 C 1.39334 * 119.95675 * 0.29175 * 9 8 7 11 11 C 1.38479 * 120.42758 * 180.25537 * 10 9 8 12 12 C 1.37691 * 120.32042 * 359.45475 * 11 10 9 13 13 C 1.40740 * 119.89587 * 0.26841 * 12 11 10 14 14 C 1.41409 * 120.20848 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00115 * 204.46599 * 14 13 12 16 16 C 1.39928 * 119.99954 * 24.46300 * 14 13 12 17 17 N 1.30828 * 119.99986 * 17.88258 * 16 14 13 18 18 Si 1.86806 * 119.99912 * 197.88290 * 16 14 13 19 19 H 1.48500 * 109.46810 * 90.00105 * 18 16 14 20 20 H 1.48497 * 109.47042 * 209.99807 * 18 16 14 21 21 H 1.48493 * 109.47158 * 330.00087 * 18 16 14 22 22 C 1.38284 * 119.94950 * 180.02562 * 9 8 7 23 23 C 1.53776 * 87.17489 * 334.52821 * 7 6 5 24 24 H 1.09010 * 109.47161 * 59.99777 * 1 2 3 25 25 H 1.08992 * 109.47375 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47065 * 300.00606 * 1 2 3 27 27 H 1.09003 * 112.84726 * 48.80941 * 5 3 2 28 28 H 1.09004 * 113.61510 * 25.43507 * 6 5 3 29 29 H 1.09000 * 113.61447 * 254.53341 * 6 5 3 30 30 H 1.09006 * 113.61626 * 219.93229 * 7 6 5 31 31 H 0.96992 * 119.99630 * 336.53085 * 8 7 6 32 32 H 1.08009 * 119.78686 * 359.97438 * 10 9 8 33 33 H 1.07993 * 119.83934 * 179.72367 * 11 10 9 34 34 H 1.07995 * 120.04862 * 180.25220 * 12 11 10 35 35 H 0.97003 * 119.99659 * 179.97438 * 17 16 14 36 36 H 1.07999 * 120.15955 * 359.97438 * 22 9 8 37 37 H 1.08999 * 113.61362 * 140.02785 * 23 7 6 38 38 H 1.09000 * 113.61278 * 270.92274 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.1079 2.7141 -0.0001 7 6 5.1806 2.2273 0.9882 8 7 6.3903 1.7179 0.3373 9 6 7.6027 1.7023 1.0308 10 6 7.6594 2.1659 2.3435 11 6 8.8572 2.1598 3.0383 12 6 10.0040 1.6848 2.4425 13 6 9.9611 1.2080 1.1190 14 6 11.1350 0.7191 0.5005 15 1 11.2211 0.7259 -0.5761 16 6 12.1851 0.2266 1.2832 17 7 11.9701 -0.1108 2.5288 18 14 13.8941 0.0508 0.5496 19 1 14.6554 1.3080 0.7617 20 1 14.6029 -1.0746 1.2101 21 1 13.7824 -0.2207 -0.9060 22 6 8.7440 1.2218 0.4153 23 6 4.1918 1.1241 1.4002 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 4.0239 0.6361 -0.7550 28 1 3.4172 3.4407 0.4281 29 1 4.5113 3.0284 -0.9627 30 1 5.3965 2.9399 1.7843 31 1 6.3492 1.3915 -0.5751 32 1 6.7641 2.5365 2.8208 33 1 8.8912 2.5255 4.0539 34 1 10.9350 1.6783 2.9898 35 1 12.6980 -0.4526 3.0713 36 1 8.7003 0.8579 -0.6006 37 1 4.6630 0.1556 1.5676 38 1 3.5241 1.4166 2.2106 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001659235973.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:58 Heat of formation + Delta-G solvation = -60.393199 kcal Electronic energy + Delta-G solvation = -20208.917337 eV Core-core repulsion = 17015.991628 eV Total energy + Delta-G solvation = -3192.925709 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.88988 -40.18594 -38.90964 -37.43504 -35.83453 -34.06229 -31.65105 -29.80427 -28.70890 -27.19504 -26.68262 -26.49360 -23.10593 -22.46705 -21.87349 -20.09746 -19.31262 -18.71694 -17.90616 -17.42754 -17.21330 -16.80352 -16.40025 -16.22162 -15.29515 -15.10645 -14.60472 -14.45607 -14.39310 -13.97191 -13.88484 -13.47672 -13.33596 -13.08869 -12.92674 -12.83247 -12.60602 -12.47441 -12.15429 -11.83126 -11.73392 -11.68806 -11.56180 -11.28978 -11.09530 -11.01440 -10.40949 -9.30523 -8.58427 -7.92800 -6.29457 1.07495 1.08574 1.36908 1.40971 1.53520 1.61530 1.75671 2.24312 2.70058 2.82681 3.35025 3.45784 3.78678 3.84884 3.97042 4.11002 4.28556 4.31027 4.51247 4.54350 4.68555 4.69795 4.77635 4.87002 4.91728 5.01759 5.07896 5.19100 5.19849 5.33429 5.35215 5.45753 5.62948 5.98252 6.05394 6.23884 6.35072 6.65373 6.67907 6.92606 7.05065 7.07622 7.28110 8.39724 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.038950 B = 0.003105 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.700186 B = 9016.349581 C = 9241.771482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.365 6.365 3 C 0.475 3.525 4 O -0.535 6.535 5 C -0.105 4.105 6 C -0.116 4.116 7 C 0.135 3.865 8 N -0.731 5.731 9 C 0.236 3.764 10 C -0.301 4.301 11 C -0.077 4.077 12 C -0.233 4.233 13 C 0.111 3.889 14 C -0.503 4.503 15 H 0.072 0.928 16 C 0.036 3.964 17 N -0.824 5.824 18 Si 0.981 3.019 19 H -0.263 1.263 20 H -0.268 1.268 21 H -0.259 1.259 22 C -0.308 4.308 23 C -0.134 4.134 24 H 0.063 0.937 25 H 0.129 0.871 26 H 0.062 0.938 27 H 0.135 0.865 28 H 0.106 0.894 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.398 0.602 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.286 0.714 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.312 0.400 -3.606 16.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.281 6.281 3 C 0.320 3.680 4 O -0.424 6.424 5 C -0.123 4.123 6 C -0.154 4.154 7 C 0.028 3.972 8 N -0.362 5.362 9 C 0.135 3.865 10 C -0.323 4.323 11 C -0.096 4.096 12 C -0.254 4.254 13 C 0.108 3.892 14 C -0.532 4.532 15 H 0.090 0.910 16 C -0.179 4.179 17 N -0.450 5.450 18 Si 0.802 3.198 19 H -0.188 1.188 20 H -0.193 1.193 21 H -0.183 1.183 22 C -0.332 4.332 23 C -0.174 4.174 24 H 0.082 0.918 25 H 0.147 0.853 26 H 0.081 0.919 27 H 0.153 0.847 28 H 0.124 0.876 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.234 0.766 32 H 0.135 0.865 33 H 0.125 0.875 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.565 0.647 -3.272 16.898 hybrid contribution 0.573 -0.356 -0.458 0.815 sum -15.992 0.291 -3.730 16.424 Atomic orbital electron populations 1.23550 0.74955 1.05630 1.02556 1.86542 1.24964 1.33151 1.83493 1.23933 0.92204 0.81041 0.70834 1.90633 1.67694 1.37243 1.46859 1.22688 0.86052 1.01467 1.02142 1.23285 0.96547 0.94325 1.01252 1.21621 0.83815 0.95503 0.96256 1.44126 1.04520 1.71707 1.15873 1.17458 0.85153 0.92617 0.91231 1.20230 0.98072 1.18790 0.95240 1.20737 0.93027 0.97656 0.98131 1.21117 0.97763 1.08820 0.97700 1.17695 0.92103 0.87282 0.92075 1.19806 1.00426 1.38378 0.94610 0.90976 1.26741 1.04422 0.91919 0.94825 1.69922 1.35020 1.30693 1.09357 0.85235 0.76336 0.78805 0.79473 1.18802 1.19278 1.18257 1.20523 0.92444 1.19070 1.01148 1.23522 0.97990 1.01469 0.94377 0.91834 0.85307 0.91925 0.84736 0.87577 0.89255 0.88677 0.76649 0.86549 0.87540 0.88776 0.90345 0.88928 0.90414 0.88303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.57 16 2 O -0.37 -7.53 10.56 -51.40 -0.54 -8.07 16 3 C 0.48 10.76 7.49 71.24 0.53 11.30 16 4 O -0.53 -14.48 15.65 21.96 0.34 -14.13 16 5 C -0.10 -2.12 4.15 -10.92 -0.05 -2.16 16 6 C -0.12 -2.39 7.15 31.12 0.22 -2.17 16 7 C 0.14 3.39 4.07 45.51 0.19 3.57 16 8 N -0.73 -22.92 5.44 -316.63 -1.72 -24.64 16 9 C 0.24 9.97 6.64 38.17 0.25 10.23 16 10 C -0.30 -12.84 9.27 22.59 0.21 -12.63 16 11 C -0.08 -3.62 10.02 22.20 0.22 -3.39 16 12 C -0.23 -12.66 8.70 22.75 0.20 -12.47 16 13 C 0.11 6.16 5.57 -21.31 -0.12 6.04 16 14 C -0.50 -27.80 9.05 23.46 0.21 -27.59 16 15 H 0.07 3.86 7.91 -2.91 -0.02 3.84 16 16 C 0.04 1.85 5.14 85.25 0.44 2.28 16 17 N -0.82 -44.24 10.96 21.82 0.24 -44.00 16 18 Si 0.98 39.02 29.60 68.60 2.03 41.05 16 19 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 20 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 21 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 22 C -0.31 -15.13 9.63 22.86 0.22 -14.91 16 23 C -0.13 -2.98 7.45 31.21 0.23 -2.74 16 24 H 0.06 0.88 8.13 -2.38 -0.02 0.86 16 25 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.06 0.88 8.13 -2.39 -0.02 0.86 16 27 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.11 2.20 7.44 -2.38 -0.02 2.18 16 29 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.10 2.50 6.20 -2.38 -0.01 2.48 16 31 H 0.40 11.16 8.71 -92.71 -0.81 10.35 16 32 H 0.12 4.25 6.06 -2.91 -0.02 4.23 16 33 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 34 H 0.09 5.38 6.15 -2.91 -0.02 5.36 16 35 H 0.29 13.86 8.30 -92.71 -0.77 13.09 16 36 H 0.09 4.33 8.06 -2.91 -0.02 4.31 16 37 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 38 H 0.10 1.99 8.10 -2.39 -0.02 1.97 16 Total: -1.00 -64.64 322.21 4.58 -60.07 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: 0.27 Total: 32.81 kcal Atomic # 6 Polarization: -47.04 SS G_CDS: 3.96 Total: -43.08 kcal Atomic # 7 Polarization: -67.16 SS G_CDS: -1.48 Total: -68.64 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.20 Total: -22.20 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Total: -64.64 4.58 -60.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659235973.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.326 kcal (2) G-P(sol) polarization free energy of solvation -64.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds