Wall clock time and date at job start Mon Mar 30 2020 02:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00041 * 2 1 4 4 H 1.48499 * 109.47414 * 274.99105 * 3 2 1 5 5 H 1.48499 * 109.46964 * 34.99207 * 3 2 1 6 6 H 1.48497 * 109.47286 * 154.98843 * 3 2 1 7 7 C 1.38810 * 119.99729 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99470 * 187.05728 * 7 2 1 9 9 N 1.36929 * 120.00399 * 7.05731 * 7 2 1 10 10 C 1.47023 * 125.64894 * 354.87513 * 9 7 2 11 11 C 1.54319 * 107.27313 * 178.91742 * 10 9 7 12 12 C 1.55160 * 102.94448 * 337.80687 * 11 10 9 13 13 H 1.09003 * 111.00759 * 277.39096 * 12 11 10 14 14 N 1.46498 * 111.00704 * 153.57529 * 12 11 10 15 15 C 1.34776 * 120.00119 * 155.00053 * 14 12 11 16 16 O 1.21778 * 119.99843 * 0.02562 * 15 14 12 17 17 C 1.41514 * 119.99742 * 179.97438 * 15 14 12 18 18 C 1.35623 * 119.99913 * 180.27480 * 17 15 14 19 19 C 1.41671 * 120.00194 * 179.72769 * 18 17 15 20 20 C 1.38278 * 126.25906 * 180.02562 * 19 18 17 21 21 C 1.39790 * 107.07833 * 179.97438 * 20 19 18 22 22 C 1.35498 * 107.90653 * 359.97438 * 21 20 19 23 23 N 1.35752 * 108.91563 * 359.73102 * 22 21 20 24 24 H 0.96992 * 125.69492 * 180.26328 * 23 22 21 25 25 C 1.47424 * 125.65200 * 174.84609 * 9 7 2 26 26 H 0.97004 * 119.99976 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.88164 * 59.50307 * 10 9 7 28 28 H 1.09001 * 109.88358 * 298.33818 * 10 9 7 29 29 H 1.09000 * 110.72346 * 219.44789 * 11 10 9 30 30 H 1.09002 * 110.87191 * 96.24354 * 11 10 9 31 31 H 0.97008 * 119.99816 * 335.00273 * 14 12 11 32 32 H 1.08003 * 120.00538 * 0.02562 * 17 15 14 33 33 H 1.08003 * 119.99494 * 359.73222 * 18 17 15 34 34 H 1.08003 * 126.46358 * 359.97438 * 20 19 18 35 35 H 1.07998 * 126.04213 * 180.02562 * 21 20 19 36 36 H 1.08003 * 125.54153 * 180.02562 * 22 21 20 37 37 H 1.09005 * 110.36657 * 85.31234 * 25 9 7 38 38 H 1.09004 * 110.36728 * 322.99682 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1074 -1.3947 5 1 1.5043 2.6199 0.8029 6 1 3.5964 1.4121 0.5919 7 6 2.0102 -1.2022 -0.0005 8 1 3.0841 -1.2057 0.1144 9 7 1.3333 -2.3835 -0.1468 10 6 -0.1282 -2.5321 -0.2052 11 6 -0.4287 -4.0328 -0.4027 12 6 0.8919 -4.5745 -1.0111 13 1 0.9276 -4.3990 -2.0863 14 7 1.0648 -5.9973 -0.7082 15 6 1.8214 -6.7704 -1.5121 16 8 2.3617 -6.2860 -2.4901 17 6 1.9889 -8.1447 -1.2191 18 6 2.7548 -8.9215 -2.0250 19 6 2.9271 -10.2960 -1.7285 20 6 3.6758 -11.2022 -2.4568 21 6 3.5695 -12.4367 -1.8096 22 6 2.7779 -12.2704 -0.7226 23 7 2.3858 -10.9723 -0.6581 24 1 1.8168 -10.5863 0.0260 25 6 1.9494 -3.7169 -0.2723 26 1 -0.4850 0.8401 0.0004 27 1 -0.5257 -1.9609 -1.0443 28 1 -0.5738 -2.1843 0.7268 29 1 -1.2582 -4.1721 -1.0959 30 1 -0.6402 -4.5154 0.5515 31 1 0.6347 -6.3831 0.0711 32 1 1.5101 -8.5742 -0.3515 33 1 3.2333 -8.4920 -2.8927 34 1 4.2369 -10.9952 -3.3561 35 1 4.0366 -13.3595 -2.1206 36 1 2.5071 -13.0437 -0.0189 37 1 2.1547 -4.1343 0.7136 38 1 2.8665 -3.6575 -0.8584 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660979920.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:53 Heat of formation + Delta-G solvation = 54.400425 kcal Electronic energy + Delta-G solvation = -20029.591758 eV Core-core repulsion = 16873.936626 eV Total energy + Delta-G solvation = -3155.655133 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.40657 -39.67066 -37.27761 -34.06838 -33.84701 -31.86306 -31.39163 -29.34183 -28.68780 -27.00051 -24.70893 -23.52291 -21.25777 -20.60777 -20.35102 -20.07660 -19.53950 -17.92197 -17.13570 -16.57873 -15.80114 -14.81328 -14.65009 -14.50495 -14.30644 -14.14249 -14.00505 -13.82804 -12.89802 -12.68159 -12.44214 -12.38322 -12.20308 -12.18416 -11.78209 -10.99472 -10.91655 -10.73929 -10.46464 -10.34550 -10.07661 -9.87514 -9.76678 -9.64081 -9.29991 -8.69794 -8.55713 -7.91490 -6.81970 -5.71203 -3.03275 0.51493 2.25492 2.77775 2.88823 3.42492 3.47652 3.49366 3.53884 3.60222 4.53225 4.69852 4.77022 4.84889 5.02890 5.13734 5.27513 5.39402 5.46640 5.61297 5.64851 5.77969 5.81150 5.83637 6.03723 6.12167 6.22872 6.35910 6.44057 6.58896 6.63342 6.69487 6.74107 7.02998 7.13300 7.53345 7.61174 7.76929 7.84550 8.26239 8.48547 9.23164 9.83370 10.48997 11.41218 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.046969 B = 0.002823 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.998341 B = 9915.724258 C =10193.631598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.079 0.921 9 N -0.604 5.604 10 C 0.178 3.822 11 C -0.149 4.149 12 C 0.127 3.873 13 H 0.097 0.903 14 N -0.714 5.714 15 C 0.548 3.452 16 O -0.550 6.550 17 C -0.238 4.238 18 C 0.021 3.979 19 C 0.008 3.992 20 C -0.145 4.145 21 C -0.208 4.208 22 C 0.011 3.989 23 N -0.545 5.545 24 H 0.417 0.583 25 C 0.130 3.870 26 H 0.252 0.748 27 H 0.051 0.949 28 H 0.044 0.956 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.396 0.604 32 H 0.113 0.887 33 H 0.151 0.849 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.168 0.832 37 H 0.018 0.982 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.610 -24.587 -0.154 24.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.053 3.947 11 C -0.188 4.188 12 C 0.021 3.979 13 H 0.115 0.885 14 N -0.364 5.364 15 C 0.338 3.662 16 O -0.430 6.430 17 C -0.260 4.260 18 C 0.000 4.000 19 C -0.102 4.102 20 C -0.170 4.170 21 C -0.232 4.232 22 C -0.124 4.124 23 N -0.139 5.139 24 H 0.254 0.746 25 C 0.002 3.998 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.229 0.771 32 H 0.131 0.869 33 H 0.169 0.831 34 H 0.163 0.837 35 H 0.158 0.842 36 H 0.185 0.815 37 H 0.036 0.964 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.835 -23.903 -0.708 23.984 hybrid contribution -0.133 0.780 0.904 1.202 sum 1.702 -23.123 0.196 23.186 Atomic orbital electron populations 1.69963 1.04927 1.25074 1.56982 1.24825 0.95736 0.97689 1.02179 0.86095 0.78670 0.83468 0.77546 1.21551 1.21792 1.20618 1.19079 0.91205 0.82455 1.42780 0.90359 1.44397 1.01641 1.00941 1.86126 1.21152 0.84646 0.87741 1.01134 1.23173 0.95826 1.00271 0.99549 1.22294 0.96685 0.78035 1.00858 0.88482 1.45941 1.51062 1.10386 1.28962 1.16923 0.79295 0.86758 0.83249 1.90846 1.48180 1.75700 1.28284 1.21793 1.06289 0.94940 1.02974 1.20855 0.92508 0.89024 0.97621 1.18334 1.05629 0.93209 0.93049 1.21553 1.01881 0.92590 1.00988 1.20895 1.05347 0.98877 0.98113 1.22055 1.02570 0.85955 1.01824 1.42203 1.40277 1.08965 1.22464 0.74554 1.21826 0.95050 0.86652 0.96265 0.93742 0.93091 0.93794 0.91674 0.92167 0.77066 0.86918 0.83132 0.83749 0.84222 0.81511 0.96433 0.93841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.39 10.36 55.49 0.57 -26.82 16 2 C -0.01 -0.24 5.48 -17.43 -0.10 -0.33 16 3 Si 0.91 22.54 29.56 -169.99 -5.02 17.52 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.23 -6.53 10.26 -15.06 -0.15 -6.68 16 8 H 0.08 2.19 7.84 -52.48 -0.41 1.78 16 9 N -0.60 -15.94 3.39 -170.07 -0.58 -16.52 16 10 C 0.18 4.35 5.38 -3.07 -0.02 4.33 16 11 C -0.15 -2.73 6.60 -24.90 -0.16 -2.90 16 12 C 0.13 2.37 3.42 -65.78 -0.23 2.14 16 13 H 0.10 2.02 7.54 -51.93 -0.39 1.63 16 14 N -0.71 -10.50 5.19 -54.64 -0.28 -10.79 16 15 C 0.55 8.41 7.56 -15.01 -0.11 8.30 16 16 O -0.55 -10.75 15.75 5.12 0.08 -10.67 16 17 C -0.24 -2.66 9.39 -39.27 -0.37 -3.03 16 18 C 0.02 0.22 9.40 -39.21 -0.37 -0.15 16 19 C 0.01 0.08 6.74 -83.91 -0.57 -0.49 16 20 C -0.15 -1.31 10.86 -38.99 -0.42 -1.73 16 21 C -0.21 -1.61 10.81 -39.98 -0.43 -2.04 16 22 C 0.01 0.07 11.90 -16.80 -0.20 -0.13 16 23 N -0.54 -3.95 5.94 -10.56 -0.06 -4.01 16 24 H 0.42 2.04 7.87 -40.82 -0.32 1.72 16 25 C 0.13 2.87 6.93 -2.53 -0.02 2.85 16 26 H 0.25 7.25 8.31 -40.82 -0.34 6.92 16 27 H 0.05 1.38 7.30 -51.93 -0.38 1.00 16 28 H 0.04 1.16 7.61 -51.93 -0.40 0.77 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 0.97 8.00 -51.93 -0.42 0.56 16 31 H 0.40 4.51 8.52 -40.82 -0.35 4.16 16 32 H 0.11 0.89 6.93 -52.48 -0.36 0.53 16 33 H 0.15 1.73 7.46 -52.48 -0.39 1.34 16 34 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 35 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 36 H 0.17 0.56 8.06 -52.48 -0.42 0.13 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 322.22 15.07 4.86 4.86 Total: -1.00 -34.70 322.22 -8.67 -43.37 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -5.09 Total: 2.91 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -3.15 Total: 0.15 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.35 Total: -58.14 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.08 Total: -10.67 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.70 -8.67 -43.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660979920.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.767 kcal (2) G-P(sol) polarization free energy of solvation -34.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds