Wall clock time and date at job start Mon Mar 30 2020 02:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00041 * 2 1 4 4 H 1.48499 * 109.47414 * 274.99105 * 3 2 1 5 5 H 1.48499 * 109.46964 * 34.99207 * 3 2 1 6 6 H 1.48497 * 109.47286 * 154.98843 * 3 2 1 7 7 C 1.38810 * 119.99729 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99470 * 187.05728 * 7 2 1 9 9 N 1.36929 * 120.00399 * 7.05731 * 7 2 1 10 10 C 1.47023 * 125.64894 * 354.87513 * 9 7 2 11 11 C 1.54319 * 107.27313 * 178.91742 * 10 9 7 12 12 C 1.55160 * 102.94448 * 337.80687 * 11 10 9 13 13 H 1.09003 * 111.00759 * 277.39096 * 12 11 10 14 14 N 1.46498 * 111.00704 * 153.57529 * 12 11 10 15 15 C 1.34776 * 120.00119 * 155.00053 * 14 12 11 16 16 O 1.21778 * 119.99843 * 0.02562 * 15 14 12 17 17 C 1.41514 * 119.99742 * 179.97438 * 15 14 12 18 18 C 1.35623 * 119.99913 * 180.27480 * 17 15 14 19 19 C 1.41671 * 120.00194 * 179.72769 * 18 17 15 20 20 C 1.38278 * 126.25906 * 180.02562 * 19 18 17 21 21 C 1.39790 * 107.07833 * 179.97438 * 20 19 18 22 22 C 1.35498 * 107.90653 * 359.97438 * 21 20 19 23 23 N 1.35752 * 108.91563 * 359.73102 * 22 21 20 24 24 H 0.96992 * 125.69492 * 180.26328 * 23 22 21 25 25 C 1.47424 * 125.65200 * 174.84609 * 9 7 2 26 26 H 0.97004 * 119.99976 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.88164 * 59.50307 * 10 9 7 28 28 H 1.09001 * 109.88358 * 298.33818 * 10 9 7 29 29 H 1.09000 * 110.72346 * 219.44789 * 11 10 9 30 30 H 1.09002 * 110.87191 * 96.24354 * 11 10 9 31 31 H 0.97008 * 119.99816 * 335.00273 * 14 12 11 32 32 H 1.08003 * 120.00538 * 0.02562 * 17 15 14 33 33 H 1.08003 * 119.99494 * 359.73222 * 18 17 15 34 34 H 1.08003 * 126.46358 * 359.97438 * 20 19 18 35 35 H 1.07998 * 126.04213 * 180.02562 * 21 20 19 36 36 H 1.08003 * 125.54153 * 180.02562 * 22 21 20 37 37 H 1.09005 * 110.36657 * 85.31234 * 25 9 7 38 38 H 1.09004 * 110.36728 * 322.99682 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1074 -1.3947 5 1 1.5043 2.6199 0.8029 6 1 3.5964 1.4121 0.5919 7 6 2.0102 -1.2022 -0.0005 8 1 3.0841 -1.2057 0.1144 9 7 1.3333 -2.3835 -0.1468 10 6 -0.1282 -2.5321 -0.2052 11 6 -0.4287 -4.0328 -0.4027 12 6 0.8919 -4.5745 -1.0111 13 1 0.9276 -4.3990 -2.0863 14 7 1.0648 -5.9973 -0.7082 15 6 1.8214 -6.7704 -1.5121 16 8 2.3617 -6.2860 -2.4901 17 6 1.9889 -8.1447 -1.2191 18 6 2.7548 -8.9215 -2.0250 19 6 2.9271 -10.2960 -1.7285 20 6 3.6758 -11.2022 -2.4568 21 6 3.5695 -12.4367 -1.8096 22 6 2.7779 -12.2704 -0.7226 23 7 2.3858 -10.9723 -0.6581 24 1 1.8168 -10.5863 0.0260 25 6 1.9494 -3.7169 -0.2723 26 1 -0.4850 0.8401 0.0004 27 1 -0.5257 -1.9609 -1.0443 28 1 -0.5738 -2.1843 0.7268 29 1 -1.2582 -4.1721 -1.0959 30 1 -0.6402 -4.5154 0.5515 31 1 0.6347 -6.3831 0.0711 32 1 1.5101 -8.5742 -0.3515 33 1 3.2333 -8.4920 -2.8927 34 1 4.2369 -10.9952 -3.3561 35 1 4.0366 -13.3595 -2.1206 36 1 2.5071 -13.0437 -0.0189 37 1 2.1547 -4.1343 0.7136 38 1 2.8665 -3.6575 -0.8584 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660979920.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:52 Heat of formation + Delta-G solvation = 30.174756 kcal Electronic energy + Delta-G solvation = -20030.642262 eV Core-core repulsion = 16873.936626 eV Total energy + Delta-G solvation = -3156.705636 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.01641 -40.95032 -38.97016 -35.63424 -34.80966 -33.73853 -31.98249 -31.10996 -29.76948 -28.53734 -26.54544 -24.64662 -22.25745 -21.97669 -21.65900 -21.21979 -20.59582 -18.99897 -18.70782 -17.75501 -17.24623 -16.68388 -16.10556 -15.75446 -15.55419 -15.15546 -14.88193 -14.71124 -14.39597 -14.18874 -13.98233 -13.69464 -13.29162 -13.20235 -12.97607 -12.90760 -12.80199 -12.41779 -12.13787 -12.03418 -11.84772 -11.59804 -11.29157 -11.01783 -10.72121 -10.08483 -9.88060 -8.94358 -8.59667 -7.89967 -5.24916 -0.31561 1.43849 1.46924 1.55360 1.58263 2.04735 2.26172 2.36951 2.50138 2.57945 3.29081 3.67265 3.75015 3.99590 4.02929 4.05210 4.19516 4.39307 4.45642 4.47315 4.54611 4.58357 4.71803 4.85498 4.95726 4.97482 5.06553 5.18741 5.37625 5.39332 5.40789 5.56751 5.62285 5.71163 5.95483 6.07929 6.16267 6.65077 6.66712 7.06679 7.32851 7.72076 8.36201 9.20789 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.046969 B = 0.002823 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.998341 B = 9915.724258 C =10193.631598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.062 4.062 3 Si 0.979 3.021 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.269 1.269 7 C -0.249 4.249 8 H 0.077 0.923 9 N -0.627 5.627 10 C 0.183 3.817 11 C -0.127 4.127 12 C 0.145 3.855 13 H 0.072 0.928 14 N -0.700 5.700 15 C 0.546 3.454 16 O -0.602 6.602 17 C -0.254 4.254 18 C 0.038 3.962 19 C -0.023 4.023 20 C -0.153 4.153 21 C -0.230 4.230 22 C 0.032 3.968 23 N -0.538 5.538 24 H 0.429 0.571 25 C 0.129 3.871 26 H 0.249 0.751 27 H 0.015 0.985 28 H 0.017 0.983 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.417 0.583 32 H 0.151 0.849 33 H 0.134 0.866 34 H 0.148 0.852 35 H 0.156 0.844 36 H 0.205 0.795 37 H 0.032 0.968 38 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.544 -27.363 1.111 27.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.256 4.256 3 Si 0.807 3.193 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.194 1.194 7 C -0.378 4.378 8 H 0.095 0.905 9 N -0.354 5.354 10 C 0.058 3.942 11 C -0.166 4.166 12 C 0.038 3.962 13 H 0.090 0.910 14 N -0.351 5.351 15 C 0.339 3.661 16 O -0.486 6.486 17 C -0.275 4.275 18 C 0.018 3.982 19 C -0.133 4.133 20 C -0.178 4.178 21 C -0.253 4.253 22 C -0.104 4.104 23 N -0.133 5.133 24 H 0.269 0.731 25 C 0.002 3.998 26 H 0.059 0.941 27 H 0.033 0.967 28 H 0.035 0.965 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.254 0.746 32 H 0.168 0.832 33 H 0.152 0.848 34 H 0.166 0.834 35 H 0.174 0.826 36 H 0.222 0.778 37 H 0.049 0.951 38 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 1.754 -26.717 0.596 26.782 hybrid contribution -0.020 1.452 0.484 1.530 sum 1.734 -25.266 1.080 25.348 Atomic orbital electron populations 1.70166 1.06207 1.25525 1.57664 1.25676 0.96716 1.00973 1.02189 0.85052 0.77854 0.79041 0.77342 1.21455 1.21561 1.19358 1.19420 0.91562 0.83942 1.42841 0.90492 1.44688 1.02755 1.01834 1.86075 1.20956 0.83503 0.91563 0.98214 1.22985 0.96058 0.95709 1.01810 1.21763 0.95537 0.79977 0.98927 0.90962 1.45659 1.51247 1.08392 1.29800 1.17540 0.78106 0.88196 0.82229 1.90826 1.50345 1.76881 1.30583 1.21650 1.08314 0.92505 1.05077 1.20815 0.91066 0.89843 0.96524 1.18186 1.07601 0.92709 0.94755 1.21880 1.01375 0.93413 1.01153 1.21235 1.06319 0.99031 0.98749 1.22726 1.00245 0.86097 1.01332 1.42249 1.39930 1.09114 1.21998 0.73114 1.21934 0.95198 0.85761 0.96920 0.94130 0.96721 0.96522 0.89405 0.88895 0.74592 0.83173 0.84838 0.83443 0.82621 0.77791 0.95057 0.95840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.86 10.36 21.65 0.22 -57.63 16 2 C -0.06 -3.65 5.48 84.86 0.46 -3.19 16 3 Si 0.98 47.09 29.56 68.60 2.03 49.12 16 4 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.25 -14.67 10.26 84.03 0.86 -13.80 16 8 H 0.08 4.41 7.84 -2.91 -0.02 4.39 16 9 N -0.63 -33.90 3.39 -691.98 -2.35 -36.25 16 10 C 0.18 9.12 5.38 86.73 0.47 9.59 16 11 C -0.13 -4.48 6.60 31.78 0.21 -4.27 16 12 C 0.14 5.37 3.42 46.38 0.16 5.53 16 13 H 0.07 3.08 7.54 -2.39 -0.02 3.06 16 14 N -0.70 -19.45 5.19 -444.96 -2.31 -21.76 16 15 C 0.55 16.44 7.56 85.05 0.64 17.08 16 16 O -0.60 -24.18 15.75 -4.60 -0.07 -24.26 16 17 C -0.25 -5.26 9.39 22.47 0.21 -5.05 16 18 C 0.04 0.80 9.40 22.51 0.21 1.01 16 19 C -0.02 -0.39 6.74 39.08 0.26 -0.13 16 20 C -0.15 -2.53 10.86 22.65 0.25 -2.28 16 21 C -0.23 -2.91 10.81 22.01 0.24 -2.67 16 22 C 0.03 0.30 11.90 83.45 0.99 1.29 16 23 N -0.54 -5.99 5.94 -187.34 -1.11 -7.11 16 24 H 0.43 2.52 7.87 -92.71 -0.73 1.79 16 25 C 0.13 5.76 6.93 86.85 0.60 6.36 16 26 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 27 H 0.01 0.82 7.30 -2.38 -0.02 0.80 16 28 H 0.02 0.91 7.61 -2.39 -0.02 0.89 16 29 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.09 2.70 8.00 -2.39 -0.02 2.68 16 31 H 0.42 8.14 8.52 -92.70 -0.79 7.35 16 32 H 0.15 1.85 6.93 -2.91 -0.02 1.83 16 33 H 0.13 3.18 7.46 -2.91 -0.02 3.16 16 34 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 35 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 36 H 0.21 0.26 8.06 -2.91 -0.02 0.24 16 37 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.02 1.12 8.14 -2.38 -0.02 1.10 16 Total: -1.00 -78.77 322.22 1.54 -77.23 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -0.44 Total: 11.18 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 5.57 Total: 9.47 kcal Atomic # 7 Polarization: -117.20 SS G_CDS: -5.55 Total: -122.75 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.07 Total: -24.26 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -78.77 1.54 -77.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660979920.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.404 kcal (2) G-P(sol) polarization free energy of solvation -78.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds