Wall clock time and date at job start Mon Mar 30 2020 02:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00190 * 2 1 4 4 H 1.48504 * 109.46992 * 274.98482 * 3 2 1 5 5 H 1.48499 * 109.47252 * 34.98609 * 3 2 1 6 6 H 1.48498 * 109.47046 * 154.98654 * 3 2 1 7 7 C 1.38811 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00667 * 187.05378 * 7 2 1 9 9 N 1.36939 * 119.99823 * 7.05959 * 7 2 1 10 10 C 1.47029 * 125.64834 * 354.78693 * 9 7 2 11 11 C 1.54317 * 107.27142 * 178.99342 * 10 9 7 12 12 C 1.55162 * 102.94321 * 337.80331 * 11 10 9 13 13 H 1.08998 * 111.00031 * 153.61158 * 12 11 10 14 14 N 1.46493 * 111.00397 * 277.43106 * 12 11 10 15 15 C 1.34779 * 119.99776 * 204.99897 * 14 12 11 16 16 O 1.21780 * 119.99919 * 359.97438 * 15 14 12 17 17 C 1.41517 * 119.99976 * 180.02562 * 15 14 12 18 18 C 1.35621 * 119.99928 * 188.38097 * 17 15 14 19 19 C 1.41671 * 119.99617 * 31.88300 * 18 17 15 20 20 C 1.38279 * 126.25351 * 187.19604 * 19 18 17 21 21 C 1.39789 * 107.07568 * 179.97438 * 20 19 18 22 22 C 1.35502 * 107.91131 * 0.02562 * 21 20 19 23 23 N 1.35750 * 108.90703 * 0.22335 * 22 21 20 24 24 H 0.97001 * 125.68950 * 179.77348 * 23 22 21 25 25 C 1.47425 * 125.65055 * 174.85016 * 9 7 2 26 26 H 0.97009 * 119.99717 * 0.02562 * 1 2 3 27 27 H 1.08992 * 109.88244 * 59.57158 * 10 9 7 28 28 H 1.09003 * 109.87828 * 298.40585 * 10 9 7 29 29 H 1.09003 * 110.72156 * 219.44363 * 11 10 9 30 30 H 1.08995 * 110.72334 * 96.17070 * 11 10 9 31 31 H 0.97000 * 120.00624 * 25.00341 * 14 12 11 32 32 H 1.08001 * 119.99790 * 8.38711 * 17 15 14 33 33 H 1.08003 * 119.99666 * 211.88180 * 18 17 15 34 34 H 1.08004 * 126.46660 * 359.97438 * 20 19 18 35 35 H 1.08009 * 126.04577 * 179.97438 * 21 20 19 36 36 H 1.07998 * 125.54577 * 179.97438 * 22 21 20 37 37 H 1.08998 * 110.36994 * 85.23739 * 25 9 7 38 38 H 1.09006 * 110.36410 * 322.90984 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5044 2.6200 0.8028 6 1 3.5964 1.4120 0.5920 7 6 2.0102 -1.2021 -0.0005 8 1 3.0840 -1.2058 0.1143 9 7 1.3333 -2.3835 -0.1468 10 6 -0.1284 -2.5322 -0.2035 11 6 -0.4289 -4.0330 -0.3998 12 6 0.8910 -4.5749 -1.0096 13 1 1.0196 -5.6336 -0.7843 14 7 0.9376 -4.3389 -2.4546 15 6 1.6945 -5.1283 -3.2423 16 8 2.3401 -6.0374 -2.7526 17 6 1.7400 -4.9000 -4.6382 18 6 2.3610 -5.7904 -5.4511 19 6 2.3650 -7.1680 -5.1205 20 6 3.0691 -8.1634 -5.7729 21 6 2.7844 -9.3647 -5.1173 22 6 1.9315 -9.0924 -4.1001 23 7 1.6645 -7.7615 -4.0944 24 1 1.0797 -7.3043 -3.4699 25 6 1.9493 -3.7170 -0.2723 26 1 -0.4850 0.8401 -0.0004 27 1 -0.5268 -1.9615 -1.0422 28 1 -0.5728 -2.1841 0.7290 29 1 -1.2593 -4.1728 -1.0920 30 1 -0.6376 -4.5129 0.5563 31 1 0.4237 -3.6145 -2.8446 32 1 1.2803 -4.0165 -5.0561 33 1 2.8523 -5.4493 -6.3503 34 1 3.7169 -8.0367 -6.6278 35 1 3.1744 -10.3381 -5.3763 36 1 1.5267 -9.8170 -3.4092 37 1 2.1558 -4.1338 0.7135 38 1 2.8657 -3.6577 -0.8597 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660979921.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:56 Heat of formation + Delta-G solvation = 77.446906 kcal Electronic energy + Delta-G solvation = -21045.957118 eV Core-core repulsion = 17891.301356 eV Total energy + Delta-G solvation = -3154.655762 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.23849 -39.51429 -37.35050 -33.83535 -33.59664 -31.84384 -30.86098 -29.32840 -28.35994 -27.14787 -24.66481 -23.57610 -21.01979 -20.31883 -20.14071 -19.88098 -19.61695 -17.96198 -16.83477 -16.51665 -15.44173 -14.76452 -14.63551 -14.27635 -14.21349 -13.94271 -13.76838 -13.38933 -13.19597 -12.76385 -12.43464 -12.25850 -11.97063 -11.93972 -11.85033 -10.97775 -10.94234 -10.74977 -10.39048 -10.15518 -10.01190 -9.87167 -9.72807 -9.61118 -8.89695 -8.69477 -8.52129 -7.49292 -6.85309 -5.76633 -3.08054 0.56678 2.66244 3.04182 3.37752 3.43644 3.43945 3.45385 3.50118 3.79175 4.47644 5.04200 5.06356 5.17761 5.26437 5.36945 5.38917 5.43197 5.50821 5.58182 5.73974 5.78314 5.94472 6.02429 6.15669 6.29862 6.31767 6.33733 6.44771 6.48384 6.66816 6.95326 7.02487 7.14250 7.49012 7.52046 7.64649 7.76118 7.88083 8.21123 8.50536 9.18393 9.78477 10.44426 11.35694 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.032437 B = 0.003991 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.007006 B = 7013.423707 C = 7430.879162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.175 3.825 11 C -0.154 4.154 12 C 0.127 3.873 13 H 0.088 0.912 14 N -0.698 5.698 15 C 0.541 3.459 16 O -0.563 6.563 17 C -0.276 4.276 18 C 0.036 3.964 19 C 0.012 3.988 20 C -0.152 4.152 21 C -0.219 4.219 22 C 0.017 3.983 23 N -0.507 5.507 24 H 0.419 0.581 25 C 0.126 3.874 26 H 0.252 0.748 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.404 0.596 32 H 0.134 0.866 33 H 0.145 0.855 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.162 0.838 37 H 0.026 0.974 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.317 -14.696 -10.534 18.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.050 3.950 11 C -0.193 4.193 12 C 0.021 3.979 13 H 0.106 0.894 14 N -0.346 5.346 15 C 0.334 3.666 16 O -0.447 6.447 17 C -0.298 4.298 18 C 0.015 3.985 19 C -0.100 4.100 20 C -0.177 4.177 21 C -0.243 4.243 22 C -0.122 4.122 23 N -0.103 5.103 24 H 0.262 0.738 25 C -0.001 4.001 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.239 0.761 32 H 0.152 0.848 33 H 0.162 0.838 34 H 0.156 0.844 35 H 0.152 0.848 36 H 0.179 0.821 37 H 0.044 0.956 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.066 -14.950 -9.996 17.984 hybrid contribution 0.040 1.660 0.237 1.677 sum -0.026 -13.290 -9.760 16.489 Atomic orbital electron populations 1.69966 1.04868 1.25008 1.57107 1.24789 0.95702 0.97597 1.02247 0.86122 0.78744 0.83594 0.77493 1.21639 1.21772 1.20650 1.19068 0.91133 0.82550 1.42708 0.90533 1.44485 1.01451 1.00966 1.86162 1.21177 0.84714 0.88097 1.01010 1.23220 0.95535 1.00469 1.00028 1.22119 0.97301 0.99066 0.79428 0.89443 1.45906 1.46655 1.34082 1.07940 1.17174 0.79655 0.82150 0.87646 1.90820 1.44205 1.32691 1.76995 1.21969 1.09279 1.05000 0.93543 1.20768 0.90055 0.89360 0.98340 1.18232 1.03906 0.93077 0.94815 1.21434 1.02030 0.92234 1.02022 1.20767 1.05057 0.98700 0.99806 1.22052 1.02799 0.85480 1.01831 1.42690 1.35740 1.07275 1.24569 0.73796 1.21934 0.94957 0.86899 0.96359 0.93798 0.93448 0.93952 0.91645 0.91011 0.76137 0.84787 0.83780 0.84382 0.84755 0.82081 0.95646 0.93919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.52 10.36 55.49 0.57 -25.94 16 2 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 3 Si 0.91 22.06 29.56 -169.99 -5.02 17.03 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.23 -6.31 10.27 -15.06 -0.15 -6.47 16 8 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 9 N -0.60 -15.18 3.39 -170.07 -0.58 -15.76 16 10 C 0.17 4.04 5.37 -3.06 -0.02 4.02 16 11 C -0.15 -2.67 6.55 -24.90 -0.16 -2.83 16 12 C 0.13 2.22 3.43 -65.78 -0.23 1.99 16 13 H 0.09 1.46 7.54 -51.93 -0.39 1.07 16 14 N -0.70 -11.24 5.18 -54.64 -0.28 -11.52 16 15 C 0.54 8.57 6.32 -15.01 -0.09 8.47 16 16 O -0.56 -10.22 12.34 5.12 0.06 -10.16 16 17 C -0.28 -3.57 9.73 -39.27 -0.38 -3.96 16 18 C 0.04 0.42 9.77 -39.21 -0.38 0.04 16 19 C 0.01 0.15 5.94 -83.91 -0.50 -0.35 16 20 C -0.15 -1.81 10.86 -38.99 -0.42 -2.23 16 21 C -0.22 -2.50 10.81 -39.98 -0.43 -2.93 16 22 C 0.02 0.20 11.90 -16.80 -0.20 0.00 16 23 N -0.51 -6.71 4.50 -10.57 -0.05 -6.76 16 24 H 0.42 5.67 6.13 -40.82 -0.25 5.42 16 25 C 0.13 2.69 6.93 -2.53 -0.02 2.68 16 26 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.05 1.19 7.30 -51.93 -0.38 0.81 16 28 H 0.04 1.10 7.61 -51.93 -0.40 0.70 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.40 6.29 8.63 -40.82 -0.35 5.94 16 32 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 33 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 34 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 35 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 36 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 37 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 316.19 15.07 4.76 4.76 Total: -1.00 -32.23 316.19 -8.74 -40.97 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -5.12 Total: 9.24 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -3.09 Total: -1.87 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: -0.33 Total: -59.98 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.06 Total: -10.16 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.23 -8.74 -40.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660979921.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.413 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds