Wall clock time and date at job start Mon Mar 30 2020 02:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00190 * 2 1 4 4 H 1.48504 * 109.46992 * 274.98482 * 3 2 1 5 5 H 1.48499 * 109.47252 * 34.98609 * 3 2 1 6 6 H 1.48498 * 109.47046 * 154.98654 * 3 2 1 7 7 C 1.38811 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00667 * 187.05378 * 7 2 1 9 9 N 1.36939 * 119.99823 * 7.05959 * 7 2 1 10 10 C 1.47029 * 125.64834 * 354.78693 * 9 7 2 11 11 C 1.54317 * 107.27142 * 178.99342 * 10 9 7 12 12 C 1.55162 * 102.94321 * 337.80331 * 11 10 9 13 13 H 1.08998 * 111.00031 * 153.61158 * 12 11 10 14 14 N 1.46493 * 111.00397 * 277.43106 * 12 11 10 15 15 C 1.34779 * 119.99776 * 204.99897 * 14 12 11 16 16 O 1.21780 * 119.99919 * 359.97438 * 15 14 12 17 17 C 1.41517 * 119.99976 * 180.02562 * 15 14 12 18 18 C 1.35621 * 119.99928 * 188.38097 * 17 15 14 19 19 C 1.41671 * 119.99617 * 31.88300 * 18 17 15 20 20 C 1.38279 * 126.25351 * 187.19604 * 19 18 17 21 21 C 1.39789 * 107.07568 * 179.97438 * 20 19 18 22 22 C 1.35502 * 107.91131 * 0.02562 * 21 20 19 23 23 N 1.35750 * 108.90703 * 0.22335 * 22 21 20 24 24 H 0.97001 * 125.68950 * 179.77348 * 23 22 21 25 25 C 1.47425 * 125.65055 * 174.85016 * 9 7 2 26 26 H 0.97009 * 119.99717 * 0.02562 * 1 2 3 27 27 H 1.08992 * 109.88244 * 59.57158 * 10 9 7 28 28 H 1.09003 * 109.87828 * 298.40585 * 10 9 7 29 29 H 1.09003 * 110.72156 * 219.44363 * 11 10 9 30 30 H 1.08995 * 110.72334 * 96.17070 * 11 10 9 31 31 H 0.97000 * 120.00624 * 25.00341 * 14 12 11 32 32 H 1.08001 * 119.99790 * 8.38711 * 17 15 14 33 33 H 1.08003 * 119.99666 * 211.88180 * 18 17 15 34 34 H 1.08004 * 126.46660 * 359.97438 * 20 19 18 35 35 H 1.08009 * 126.04577 * 179.97438 * 21 20 19 36 36 H 1.07998 * 125.54577 * 179.97438 * 22 21 20 37 37 H 1.08998 * 110.36994 * 85.23739 * 25 9 7 38 38 H 1.09006 * 110.36410 * 322.90984 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5044 2.6200 0.8028 6 1 3.5964 1.4120 0.5920 7 6 2.0102 -1.2021 -0.0005 8 1 3.0840 -1.2058 0.1143 9 7 1.3333 -2.3835 -0.1468 10 6 -0.1284 -2.5322 -0.2035 11 6 -0.4289 -4.0330 -0.3998 12 6 0.8910 -4.5749 -1.0096 13 1 1.0196 -5.6336 -0.7843 14 7 0.9376 -4.3389 -2.4546 15 6 1.6945 -5.1283 -3.2423 16 8 2.3401 -6.0374 -2.7526 17 6 1.7400 -4.9000 -4.6382 18 6 2.3610 -5.7904 -5.4511 19 6 2.3650 -7.1680 -5.1205 20 6 3.0691 -8.1634 -5.7729 21 6 2.7844 -9.3647 -5.1173 22 6 1.9315 -9.0924 -4.1001 23 7 1.6645 -7.7615 -4.0944 24 1 1.0797 -7.3043 -3.4699 25 6 1.9493 -3.7170 -0.2723 26 1 -0.4850 0.8401 -0.0004 27 1 -0.5268 -1.9615 -1.0422 28 1 -0.5728 -2.1841 0.7290 29 1 -1.2593 -4.1728 -1.0920 30 1 -0.6376 -4.5129 0.5563 31 1 0.4237 -3.6145 -2.8446 32 1 1.2803 -4.0165 -5.0561 33 1 2.8523 -5.4493 -6.3503 34 1 3.7169 -8.0367 -6.6278 35 1 3.1744 -10.3381 -5.3763 36 1 1.5267 -9.8170 -3.4092 37 1 2.1558 -4.1338 0.7135 38 1 2.8657 -3.6577 -0.8597 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660979921.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:56 Heat of formation + Delta-G solvation = 56.548255 kcal Electronic energy + Delta-G solvation = -21046.863351 eV Core-core repulsion = 17891.301356 eV Total energy + Delta-G solvation = -3155.561996 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.19210 -40.74396 -38.92753 -35.43784 -34.62380 -33.61238 -31.76663 -31.09612 -29.56948 -28.61859 -26.53102 -24.75227 -22.21186 -21.88008 -21.31519 -21.18306 -20.65269 -19.17797 -18.66622 -17.75203 -16.80808 -16.59497 -15.99832 -15.63534 -15.43436 -15.23684 -14.92074 -14.68361 -14.31716 -13.92345 -13.89206 -13.70526 -13.57597 -13.09900 -12.90992 -12.85640 -12.80463 -12.29487 -12.09169 -12.03473 -11.87206 -11.63511 -10.99903 -10.72542 -10.66929 -10.07534 -9.67727 -8.89441 -8.42002 -7.89190 -5.22394 -0.39005 1.44283 1.45031 1.54234 1.72409 2.07000 2.35247 2.47033 2.52469 2.69828 3.29821 3.65259 3.76498 4.05795 4.15717 4.16659 4.29597 4.38855 4.52259 4.57029 4.65288 4.70644 4.72828 4.87195 4.93869 5.00115 5.11122 5.16101 5.41691 5.42537 5.45301 5.59318 5.66183 5.73928 6.09796 6.17280 6.25787 6.65665 6.71495 7.08897 7.29691 7.74269 8.38745 9.21159 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.032437 B = 0.003991 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.007006 B = 7013.423707 C = 7430.879162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.057 4.057 3 Si 0.974 3.026 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.621 5.621 10 C 0.183 3.817 11 C -0.133 4.133 12 C 0.143 3.857 13 H 0.103 0.897 14 N -0.700 5.700 15 C 0.542 3.458 16 O -0.591 6.591 17 C -0.305 4.305 18 C 0.056 3.944 19 C -0.025 4.025 20 C -0.150 4.150 21 C -0.231 4.231 22 C 0.012 3.988 23 N -0.518 5.518 24 H 0.415 0.585 25 C 0.122 3.878 26 H 0.248 0.752 27 H 0.022 0.978 28 H 0.006 0.994 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.406 0.594 32 H 0.151 0.849 33 H 0.178 0.822 34 H 0.161 0.839 35 H 0.156 0.844 36 H 0.187 0.813 37 H 0.028 0.972 38 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.088 -16.019 -11.885 19.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.250 4.250 3 Si 0.802 3.198 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.199 1.199 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.348 5.348 10 C 0.058 3.942 11 C -0.172 4.172 12 C 0.037 3.963 13 H 0.121 0.879 14 N -0.348 5.348 15 C 0.337 3.663 16 O -0.477 6.477 17 C -0.327 4.327 18 C 0.036 3.964 19 C -0.136 4.136 20 C -0.175 4.175 21 C -0.255 4.255 22 C -0.126 4.126 23 N -0.113 5.113 24 H 0.257 0.743 25 C -0.004 4.004 26 H 0.058 0.942 27 H 0.040 0.960 28 H 0.024 0.976 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.241 0.759 32 H 0.169 0.831 33 H 0.195 0.805 34 H 0.179 0.821 35 H 0.174 0.826 36 H 0.204 0.796 37 H 0.045 0.955 38 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 0.349 -16.291 -11.369 19.869 hybrid contribution -0.008 1.919 0.631 2.020 sum 0.341 -14.372 -10.738 17.944 Atomic orbital electron populations 1.70158 1.05992 1.25329 1.57769 1.25542 0.96593 1.00552 1.02336 0.85133 0.77721 0.79517 0.77397 1.21194 1.21872 1.19901 1.19345 0.91302 0.84111 1.42725 0.91078 1.44715 1.02520 1.01560 1.85978 1.20967 0.83423 0.91734 0.98074 1.23069 0.96367 0.95971 1.01769 1.21895 0.95489 0.98867 0.80064 0.87871 1.45884 1.47192 1.34498 1.07247 1.17562 0.78772 0.81319 0.88664 1.90797 1.45396 1.33818 1.77674 1.21940 1.11853 1.06639 0.92226 1.21226 0.87723 0.88656 0.98807 1.18681 1.05214 0.94045 0.95629 1.21875 1.01382 0.92084 1.02208 1.21164 1.04992 0.99652 0.99676 1.22650 1.02387 0.85427 1.02177 1.42809 1.35946 1.07895 1.24681 0.74312 1.22057 0.95424 0.86186 0.96736 0.94245 0.95997 0.97557 0.88804 0.89231 0.75911 0.83146 0.80466 0.82101 0.82601 0.79629 0.95468 0.95762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.52 10.36 21.65 0.22 -55.29 16 2 C -0.06 -3.21 5.48 84.86 0.46 -2.74 16 3 Si 0.97 45.85 29.56 68.60 2.03 47.88 16 4 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.25 -14.00 10.27 84.03 0.86 -13.14 16 8 H 0.07 4.01 7.84 -2.91 -0.02 3.98 16 9 N -0.62 -31.84 3.39 -691.98 -2.35 -34.19 16 10 C 0.18 8.59 5.37 86.73 0.47 9.06 16 11 C -0.13 -4.45 6.55 31.78 0.21 -4.24 16 12 C 0.14 4.88 3.43 46.39 0.16 5.04 16 13 H 0.10 3.27 7.54 -2.39 -0.02 3.25 16 14 N -0.70 -22.10 5.18 -444.95 -2.30 -24.40 16 15 C 0.54 16.76 6.32 85.05 0.54 17.30 16 16 O -0.59 -21.05 12.34 -4.60 -0.06 -21.11 16 17 C -0.30 -7.52 9.73 22.47 0.22 -7.30 16 18 C 0.06 1.21 9.77 22.51 0.22 1.43 16 19 C -0.02 -0.61 5.94 39.08 0.23 -0.37 16 20 C -0.15 -3.19 10.86 22.65 0.25 -2.95 16 21 C -0.23 -4.70 10.81 22.01 0.24 -4.46 16 22 C 0.01 0.26 11.90 83.45 0.99 1.25 16 23 N -0.52 -13.00 4.50 -187.34 -0.84 -13.84 16 24 H 0.41 10.86 6.13 -92.71 -0.57 10.30 16 25 C 0.12 5.29 6.93 86.86 0.60 5.89 16 26 H 0.25 14.18 8.31 -92.70 -0.77 13.41 16 27 H 0.02 1.13 7.30 -2.39 -0.02 1.11 16 28 H 0.01 0.33 7.61 -2.39 -0.02 0.31 16 29 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.41 12.47 8.63 -92.71 -0.80 11.67 16 32 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 33 H 0.18 2.45 8.06 -2.91 -0.02 2.43 16 34 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 35 H 0.16 2.38 8.06 -2.91 -0.02 2.35 16 36 H 0.19 2.75 8.06 -2.91 -0.02 2.73 16 37 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.02 1.12 8.14 -2.38 -0.02 1.10 16 Total: -1.00 -70.59 316.19 1.86 -68.73 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: -0.29 Total: 27.47 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: 5.45 Total: 4.76 kcal Atomic # 7 Polarization: -122.46 SS G_CDS: -5.27 Total: -127.73 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.06 Total: -21.11 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -70.59 1.86 -68.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660979921.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.280 kcal (2) G-P(sol) polarization free energy of solvation -70.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds