Wall clock time and date at job start Mon Mar 30 2020 01:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00140 * 2 1 4 4 H 1.48498 * 109.47336 * 240.00244 * 3 2 1 5 5 H 1.48498 * 109.47085 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46873 * 120.00038 * 3 2 1 7 7 C 1.38808 * 119.99803 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99917 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00064 * 359.97438 * 7 2 1 10 10 C 1.46508 * 119.99805 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46807 * 180.02562 * 10 9 7 12 12 H 1.09001 * 110.91988 * 51.09511 * 11 10 9 13 13 C 1.55157 * 111.00230 * 175.00251 * 11 10 9 14 14 C 1.54321 * 103.10033 * 153.66249 * 13 11 10 15 15 N 1.47019 * 107.27531 * 337.71659 * 14 13 11 16 16 C 1.34778 * 125.65277 * 178.97403 * 15 14 13 17 17 O 1.21511 * 120.00201 * 179.97438 * 16 15 14 18 18 C 1.48175 * 119.99516 * 359.97438 * 16 15 14 19 19 C 1.39310 * 119.72154 * 179.97438 * 18 16 15 20 20 C 1.38583 * 119.06247 * 179.97438 * 19 18 16 21 21 C 1.38628 * 118.48633 * 0.02562 * 20 19 18 22 22 C 1.38562 * 119.35379 * 359.97438 * 21 20 19 23 23 N 1.31529 * 120.90047 * 359.74402 * 22 21 20 24 24 C 1.47431 * 108.70142 * 358.94050 * 15 14 13 25 25 H 0.96998 * 119.99684 * 359.97438 * 1 2 3 26 26 H 0.96996 * 119.99873 * 0.02562 * 9 7 2 27 27 H 1.08995 * 109.46564 * 60.00176 * 10 9 7 28 28 H 1.08993 * 109.47195 * 300.00058 * 10 9 7 29 29 H 1.09002 * 110.72219 * 35.20946 * 13 11 10 30 30 H 1.09003 * 110.71618 * 272.11558 * 13 11 10 31 31 H 1.09001 * 109.88480 * 97.13771 * 14 13 11 32 32 H 1.09004 * 109.87910 * 218.29695 * 14 13 11 33 33 H 1.08004 * 120.46827 * 359.97438 * 19 18 16 34 34 H 1.07998 * 120.75777 * 180.02562 * 20 19 18 35 35 H 1.07997 * 120.32854 * 180.02562 * 21 20 19 36 36 H 1.07998 * 119.55328 * 180.02562 * 22 21 20 37 37 H 1.08999 * 110.36190 * 142.96411 * 24 15 14 38 38 H 1.08998 * 110.36491 * 265.18090 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3252 -4.6998 -0.7938 13 6 1.7992 -6.1801 -0.1274 14 6 0.8261 -7.1679 0.5499 15 7 -0.0332 -6.3858 1.4507 16 6 -1.0293 -6.8804 2.2121 17 8 -1.6771 -6.1376 2.9228 18 6 -1.3343 -8.3302 2.1826 19 6 -2.3648 -8.8354 2.9723 20 6 -2.6387 -10.1933 2.9337 21 6 -1.8718 -10.9992 2.1066 22 6 -0.8623 -10.4286 1.3482 23 7 -0.6272 -9.1356 1.3999 24 6 0.3756 -4.9709 1.3838 25 1 -0.4849 0.8401 0.0004 26 1 0.3556 -2.3880 -0.0005 27 1 2.6846 -3.7145 0.8894 28 1 2.6847 -3.7146 -0.8905 29 1 2.7521 -6.1539 0.4012 30 1 1.9479 -6.4423 -1.1749 31 1 0.2168 -7.6646 -0.2051 32 1 1.3869 -7.9073 1.1218 33 1 -2.9420 -8.1780 3.6057 34 1 -3.4316 -10.6141 3.5342 35 1 -2.0599 -12.0614 2.0531 36 1 -0.2631 -11.0534 0.7024 37 1 -0.4969 -4.3207 1.4464 38 1 1.0778 -4.7407 2.1850 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662586357.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:48 Heat of formation + Delta-G solvation = 22.987118 kcal Electronic energy + Delta-G solvation = -20507.008439 eV Core-core repulsion = 17349.991124 eV Total energy + Delta-G solvation = -3157.017316 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.81586 -39.27700 -37.47108 -34.64622 -33.06832 -32.11525 -31.53197 -30.29909 -28.57867 -26.02077 -24.43372 -23.70332 -23.02781 -21.85317 -20.22347 -19.78493 -17.65896 -17.01944 -16.88806 -16.31303 -15.88421 -15.42753 -15.04817 -14.63821 -14.36778 -13.84740 -13.57298 -13.48856 -13.28546 -13.11130 -12.71989 -12.47411 -12.23930 -12.04055 -11.63539 -11.21330 -10.80734 -10.63701 -10.52527 -10.37980 -10.26067 -10.23749 -9.98657 -9.64886 -9.57568 -9.49572 -8.83414 -8.45422 -6.88509 -5.71606 -3.00899 0.41327 0.90879 2.69377 2.97883 3.47682 3.51669 3.53120 3.67313 3.90455 4.43749 4.47927 4.62364 4.66946 4.75412 4.83313 4.92716 5.10131 5.15909 5.41418 5.51210 5.61443 5.63694 5.68313 5.78218 5.92349 5.98476 6.07015 6.14166 6.18597 6.24697 6.34019 6.43825 6.52463 6.74889 6.88411 7.43769 7.61843 7.73293 8.17798 8.46782 9.57786 10.15272 10.49742 11.51102 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.039931 B = 0.003341 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.036729 B = 8379.267671 C = 8930.630655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.165 3.835 11 C -0.104 4.104 12 H 0.085 0.915 13 C -0.132 4.132 14 C 0.121 3.879 15 N -0.597 5.597 16 C 0.576 3.424 17 O -0.534 6.534 18 C 0.088 3.912 19 C -0.113 4.113 20 C -0.083 4.083 21 C -0.155 4.155 22 C 0.094 3.906 23 N -0.453 5.453 24 C 0.113 3.887 25 H 0.256 0.744 26 H 0.384 0.616 27 H 0.022 0.978 28 H 0.025 0.975 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.149 0.851 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.162 0.838 37 H 0.084 0.916 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.043 -25.494 2.655 25.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.037 3.963 11 C -0.124 4.124 12 H 0.103 0.897 13 C -0.170 4.170 14 C -0.002 4.002 15 N -0.329 5.329 16 C 0.363 3.637 17 O -0.411 6.411 18 C -0.051 4.051 19 C -0.134 4.134 20 C -0.108 4.108 21 C -0.175 4.175 22 C -0.066 4.066 23 N -0.165 5.165 24 C -0.008 4.008 25 H 0.066 0.934 26 H 0.218 0.782 27 H 0.040 0.960 28 H 0.042 0.958 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.166 0.834 34 H 0.159 0.841 35 H 0.156 0.844 36 H 0.179 0.821 37 H 0.102 0.898 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.651 -24.588 2.577 24.778 hybrid contribution -0.530 0.426 0.474 0.829 sum -2.181 -24.162 3.051 24.451 Atomic orbital electron populations 1.69655 1.05108 1.25778 1.57548 1.24752 0.95516 0.97707 1.02984 0.86260 0.78497 0.83567 0.77803 1.21297 1.21711 1.21281 1.19173 0.90989 0.84165 1.42927 0.91214 1.42377 1.05909 0.99953 1.89535 1.20585 0.92740 0.84766 0.98180 1.22663 0.98467 0.94889 0.96383 0.89666 1.22766 0.98472 0.94512 1.01258 1.22082 0.92008 0.93454 0.92685 1.48386 1.32186 1.10275 1.42012 1.17521 0.79922 0.85988 0.80290 1.90815 1.50349 1.58721 1.41198 1.21200 0.94466 0.94145 0.95251 1.22164 0.96753 0.96163 0.98287 1.21634 0.98754 0.93121 0.97337 1.22376 0.96541 1.01529 0.97060 1.22876 0.95651 0.90873 0.97166 1.67868 1.25839 1.05201 1.17564 1.22504 1.00215 0.80323 0.97766 0.93442 0.78208 0.96014 0.95756 0.90550 0.90090 0.90808 0.91029 0.83370 0.84111 0.84353 0.82072 0.89768 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.84 13.06 55.49 0.72 -28.11 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 N -0.73 -18.83 5.56 -59.91 -0.33 -19.16 16 10 C 0.17 3.29 5.73 -4.04 -0.02 3.27 16 11 C -0.10 -1.71 3.07 -88.21 -0.27 -1.98 16 12 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 13 C -0.13 -1.64 6.40 -24.90 -0.16 -1.80 16 14 C 0.12 1.52 5.40 -3.07 -0.02 1.50 16 15 N -0.60 -9.39 3.33 -171.20 -0.57 -9.96 16 16 C 0.58 9.51 7.84 -12.18 -0.10 9.42 16 17 O -0.53 -10.49 16.58 5.36 0.09 -10.40 16 18 C 0.09 1.15 6.72 -83.01 -0.56 0.59 16 19 C -0.11 -1.22 9.63 -39.06 -0.38 -1.59 16 20 C -0.08 -0.62 10.17 -39.31 -0.40 -1.02 16 21 C -0.16 -1.00 10.11 -39.32 -0.40 -1.40 16 22 C 0.09 0.74 11.18 -17.56 -0.20 0.54 16 23 N -0.45 -5.10 6.85 -9.80 -0.07 -5.17 16 24 C 0.11 1.98 6.35 -2.26 -0.01 1.97 16 25 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 26 H 0.38 10.45 7.67 -40.82 -0.31 10.13 16 27 H 0.02 0.44 7.98 -51.93 -0.41 0.02 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.90 8.04 -51.93 -0.42 0.48 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.90 7.40 -51.93 -0.38 0.51 16 32 H 0.07 0.84 7.55 -51.93 -0.39 0.45 16 33 H 0.15 1.59 7.64 -52.48 -0.40 1.19 16 34 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 35 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 36 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.08 1.68 8.04 -51.93 -0.42 1.26 16 38 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 LS Contribution 321.32 15.07 4.84 4.84 Total: -1.00 -34.19 321.32 -8.32 -42.52 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -5.23 Total: 5.68 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -2.75 Total: 2.00 kcal Atomic # 7 Polarization: -62.15 SS G_CDS: -0.24 Total: -62.40 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.19 -8.32 -42.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662586357.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.505 kcal (2) G-P(sol) polarization free energy of solvation -34.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds