Wall clock time and date at job start Mon Mar 30 2020 01:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00140 * 2 1 4 4 H 1.48498 * 109.47336 * 240.00244 * 3 2 1 5 5 H 1.48498 * 109.47085 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46873 * 120.00038 * 3 2 1 7 7 C 1.38808 * 119.99803 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99917 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00064 * 359.97438 * 7 2 1 10 10 C 1.46508 * 119.99805 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46807 * 180.02562 * 10 9 7 12 12 H 1.09001 * 110.91988 * 51.09511 * 11 10 9 13 13 C 1.55157 * 111.00230 * 175.00251 * 11 10 9 14 14 C 1.54321 * 103.10033 * 153.66249 * 13 11 10 15 15 N 1.47019 * 107.27531 * 337.71659 * 14 13 11 16 16 C 1.34778 * 125.65277 * 178.97403 * 15 14 13 17 17 O 1.21511 * 120.00201 * 179.97438 * 16 15 14 18 18 C 1.48175 * 119.99516 * 359.97438 * 16 15 14 19 19 C 1.39310 * 119.72154 * 179.97438 * 18 16 15 20 20 C 1.38583 * 119.06247 * 179.97438 * 19 18 16 21 21 C 1.38628 * 118.48633 * 0.02562 * 20 19 18 22 22 C 1.38562 * 119.35379 * 359.97438 * 21 20 19 23 23 N 1.31529 * 120.90047 * 359.74402 * 22 21 20 24 24 C 1.47431 * 108.70142 * 358.94050 * 15 14 13 25 25 H 0.96998 * 119.99684 * 359.97438 * 1 2 3 26 26 H 0.96996 * 119.99873 * 0.02562 * 9 7 2 27 27 H 1.08995 * 109.46564 * 60.00176 * 10 9 7 28 28 H 1.08993 * 109.47195 * 300.00058 * 10 9 7 29 29 H 1.09002 * 110.72219 * 35.20946 * 13 11 10 30 30 H 1.09003 * 110.71618 * 272.11558 * 13 11 10 31 31 H 1.09001 * 109.88480 * 97.13771 * 14 13 11 32 32 H 1.09004 * 109.87910 * 218.29695 * 14 13 11 33 33 H 1.08004 * 120.46827 * 359.97438 * 19 18 16 34 34 H 1.07998 * 120.75777 * 180.02562 * 20 19 18 35 35 H 1.07997 * 120.32854 * 180.02562 * 21 20 19 36 36 H 1.07998 * 119.55328 * 180.02562 * 22 21 20 37 37 H 1.08999 * 110.36190 * 142.96411 * 24 15 14 38 38 H 1.08998 * 110.36491 * 265.18090 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3252 -4.6998 -0.7938 13 6 1.7992 -6.1801 -0.1274 14 6 0.8261 -7.1679 0.5499 15 7 -0.0332 -6.3858 1.4507 16 6 -1.0293 -6.8804 2.2121 17 8 -1.6771 -6.1376 2.9228 18 6 -1.3343 -8.3302 2.1826 19 6 -2.3648 -8.8354 2.9723 20 6 -2.6387 -10.1933 2.9337 21 6 -1.8718 -10.9992 2.1066 22 6 -0.8623 -10.4286 1.3482 23 7 -0.6272 -9.1356 1.3999 24 6 0.3756 -4.9709 1.3838 25 1 -0.4849 0.8401 0.0004 26 1 0.3556 -2.3880 -0.0005 27 1 2.6846 -3.7145 0.8894 28 1 2.6847 -3.7146 -0.8905 29 1 2.7521 -6.1539 0.4012 30 1 1.9479 -6.4423 -1.1749 31 1 0.2168 -7.6646 -0.2051 32 1 1.3869 -7.9073 1.1218 33 1 -2.9420 -8.1780 3.6057 34 1 -3.4316 -10.6141 3.5342 35 1 -2.0599 -12.0614 2.0531 36 1 -0.2631 -11.0534 0.7024 37 1 -0.4969 -4.3207 1.4464 38 1 1.0778 -4.7407 2.1850 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662586357.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:48 Heat of formation + Delta-G solvation = -0.511574 kcal Electronic energy + Delta-G solvation = -20508.027419 eV Core-core repulsion = 17349.991124 eV Total energy + Delta-G solvation = -3158.036296 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.75227 -40.31718 -38.79977 -36.46686 -34.19372 -33.39581 -32.49872 -31.80710 -29.97941 -27.50721 -25.82511 -24.58567 -24.24056 -23.27115 -21.49749 -20.98044 -19.22769 -18.49973 -17.87487 -17.36344 -16.76801 -16.60179 -16.51433 -16.06152 -15.41333 -15.26569 -15.10012 -14.76367 -14.55772 -14.14899 -13.97868 -13.85997 -13.51184 -13.11108 -13.01189 -12.82473 -12.70502 -12.28427 -12.12222 -11.87837 -11.65936 -11.60712 -11.41035 -10.93442 -10.92617 -10.41740 -10.25126 -9.70130 -9.00495 -7.94470 -5.24202 -0.37160 0.27788 1.46786 1.50824 1.56837 1.64652 1.81865 2.56400 2.86525 3.02311 3.38145 3.49930 3.68296 3.78621 3.87053 3.98220 4.06258 4.10263 4.18344 4.36110 4.46333 4.49542 4.59845 4.71097 4.78666 4.84768 4.95058 4.97997 5.06540 5.11143 5.17643 5.20468 5.29223 5.42816 5.50108 5.66608 6.26923 6.38449 6.69632 7.00216 7.32797 8.08859 8.31036 9.29186 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.039931 B = 0.003341 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.036729 B = 8379.267671 C = 8930.630655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.080 4.080 3 Si 0.977 3.023 4 H -0.274 1.274 5 H -0.297 1.297 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.080 0.920 9 N -0.749 5.749 10 C 0.165 3.835 11 C -0.095 4.095 12 H 0.075 0.925 13 C -0.117 4.117 14 C 0.126 3.874 15 N -0.600 5.600 16 C 0.566 3.434 17 O -0.584 6.584 18 C 0.055 3.945 19 C -0.126 4.126 20 C -0.079 4.079 21 C -0.132 4.132 22 C 0.089 3.911 23 N -0.468 5.468 24 C 0.117 3.883 25 H 0.251 0.749 26 H 0.371 0.629 27 H 0.026 0.974 28 H 0.038 0.962 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.135 0.865 34 H 0.174 0.826 35 H 0.183 0.817 36 H 0.198 0.802 37 H 0.045 0.955 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.650 -28.952 1.875 29.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.272 4.272 3 Si 0.806 3.194 4 H -0.200 1.200 5 H -0.224 1.224 6 H -0.204 1.204 7 C -0.378 4.378 8 H 0.098 0.902 9 N -0.392 5.392 10 C 0.039 3.961 11 C -0.115 4.115 12 H 0.094 0.906 13 C -0.155 4.155 14 C 0.004 3.996 15 N -0.331 5.331 16 C 0.355 3.645 17 O -0.465 6.465 18 C -0.081 4.081 19 C -0.147 4.147 20 C -0.104 4.104 21 C -0.152 4.152 22 C -0.071 4.071 23 N -0.180 5.180 24 C -0.006 4.006 25 H 0.059 0.941 26 H 0.203 0.797 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.108 0.892 30 H 0.126 0.874 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.153 0.847 34 H 0.191 0.809 35 H 0.200 0.800 36 H 0.215 0.785 37 H 0.064 0.936 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.199 -28.094 1.779 28.151 hybrid contribution -0.968 1.299 0.727 1.775 sum -1.167 -26.795 2.506 26.938 Atomic orbital electron populations 1.69838 1.06821 1.26143 1.59557 1.25644 0.96390 1.01399 1.03733 0.85159 0.77118 0.78862 0.78304 1.19981 1.22357 1.20390 1.19649 0.91652 0.85284 1.41176 0.90201 1.42642 1.05598 1.01433 1.89491 1.20753 0.93237 0.83616 0.98539 1.22477 0.97880 0.96042 0.95060 0.90648 1.22784 0.98308 0.91203 1.03224 1.22222 0.91670 0.93266 0.92396 1.48504 1.32562 1.09600 1.42405 1.18274 0.79209 0.87720 0.79343 1.90761 1.52030 1.60463 1.43256 1.20708 0.96877 0.92292 0.98240 1.22225 0.96398 0.97937 0.98178 1.22030 0.99444 0.91435 0.97533 1.22889 0.94401 1.03414 0.94485 1.23584 0.96244 0.89801 0.97423 1.67753 1.26057 1.06701 1.17519 1.22268 0.98494 0.81417 0.98422 0.94079 0.79724 0.95642 0.94446 0.89229 0.87369 0.89912 0.89541 0.84739 0.80905 0.80009 0.78536 0.93637 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.12 13.06 21.65 0.28 -61.83 16 2 C -0.08 -4.73 5.50 84.86 0.47 -4.27 16 3 Si 0.98 47.39 29.55 68.60 2.03 49.42 16 4 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 6 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 7 C -0.25 -14.10 9.99 84.03 0.84 -13.26 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 9 N -0.75 -39.43 5.56 -343.45 -1.91 -41.33 16 10 C 0.16 6.56 5.73 86.38 0.49 7.05 16 11 C -0.10 -3.13 3.07 -9.23 -0.03 -3.16 16 12 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 13 C -0.12 -2.66 6.40 31.78 0.20 -2.46 16 14 C 0.13 2.99 5.40 86.73 0.47 3.46 16 15 N -0.60 -19.57 3.33 -813.84 -2.71 -22.27 16 16 C 0.57 19.86 7.84 86.88 0.68 20.54 16 17 O -0.58 -25.14 16.58 -3.75 -0.06 -25.20 16 18 C 0.06 1.46 6.72 41.91 0.28 1.74 16 19 C -0.13 -2.71 9.63 22.61 0.22 -2.49 16 20 C -0.08 -0.95 10.17 22.45 0.23 -0.72 16 21 C -0.13 -1.09 10.11 22.44 0.23 -0.86 16 22 C 0.09 1.06 11.18 84.82 0.95 2.01 16 23 N -0.47 -9.68 6.85 -184.90 -1.27 -10.95 16 24 C 0.12 4.33 6.35 87.02 0.55 4.89 16 25 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 26 H 0.37 21.19 7.67 -92.71 -0.71 20.47 16 27 H 0.03 1.01 7.98 -2.39 -0.02 0.99 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.09 1.85 8.04 -2.39 -0.02 1.83 16 30 H 0.11 1.94 8.14 -2.39 -0.02 1.93 16 31 H 0.08 1.85 7.40 -2.39 -0.02 1.83 16 32 H 0.09 1.84 7.55 -2.38 -0.02 1.82 16 33 H 0.13 3.13 7.64 -2.91 -0.02 3.11 16 34 H 0.17 0.91 8.06 -2.91 -0.02 0.88 16 35 H 0.18 -0.02 8.06 -2.91 -0.02 -0.04 16 36 H 0.20 0.84 8.06 -2.91 -0.02 0.82 16 37 H 0.04 2.01 8.04 -2.39 -0.02 1.99 16 38 H 0.06 2.44 7.93 -2.39 -0.02 2.42 16 Total: -1.00 -78.90 321.32 2.30 -76.60 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 0.35 Total: 23.10 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 5.58 Total: 12.47 kcal Atomic # 7 Polarization: -130.79 SS G_CDS: -5.60 Total: -136.39 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.06 Total: -25.20 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -78.90 2.30 -76.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662586357.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.093 kcal (2) G-P(sol) polarization free energy of solvation -78.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds