Wall clock time and date at job start Mon Mar 30 2020 02:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99982 * 2 1 4 4 H 1.48492 * 109.47170 * 90.00025 * 3 2 1 5 5 H 1.48500 * 109.46626 * 209.99923 * 3 2 1 6 6 H 1.48498 * 109.47027 * 329.99885 * 3 2 1 7 7 C 1.38816 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00503 * 13.98650 * 7 2 1 9 9 N 1.36940 * 119.99687 * 193.98858 * 7 2 1 10 10 C 1.47070 * 136.05795 * 9.70949 * 9 7 2 11 11 C 1.53757 * 87.88761 * 152.96583 * 10 9 7 12 12 C 1.53000 * 114.57165 * 272.66500 * 11 10 9 13 13 N 1.46499 * 109.47072 * 268.67073 * 12 11 10 14 14 C 1.34778 * 119.99852 * 180.02562 * 13 12 11 15 15 O 1.21784 * 120.00156 * 359.97438 * 14 13 12 16 16 C 1.41516 * 119.99864 * 180.02562 * 14 13 12 17 17 C 1.35615 * 120.00043 * 187.93638 * 16 14 13 18 18 C 1.41678 * 119.99750 * 8.73810 * 17 16 14 19 19 C 1.38283 * 126.25515 * 216.40280 * 18 17 16 20 20 C 1.39788 * 107.07534 * 179.88385 * 19 18 17 21 21 C 1.35502 * 107.91167 * 0.39016 * 20 19 18 22 22 N 1.35759 * 108.90757 * 359.75856 * 21 20 19 23 23 H 0.96998 * 125.68894 * 179.97438 * 22 21 20 24 24 C 1.47064 * 136.05662 * 190.08584 * 9 7 2 25 25 H 0.97005 * 119.99798 * 174.90484 * 1 2 3 26 26 H 1.08994 * 113.46650 * 267.69843 * 10 9 7 27 27 H 1.09007 * 113.46646 * 38.13885 * 10 9 7 28 28 H 1.08994 * 114.08781 * 139.77741 * 11 10 9 29 29 H 1.08997 * 109.47442 * 28.67340 * 12 11 10 30 30 H 1.09001 * 109.46943 * 148.67363 * 12 11 10 31 31 H 0.96998 * 120.00394 * 359.97438 * 13 12 11 32 32 H 1.08000 * 119.99890 * 7.93209 * 16 14 13 33 33 H 1.08001 * 120.00185 * 188.74284 * 17 16 14 34 34 H 1.07998 * 126.46642 * 0.03530 * 19 18 17 35 35 H 1.07999 * 126.04618 * 180.11683 * 20 19 18 36 36 H 1.07997 * 125.54667 * 179.74042 * 21 20 19 37 37 H 1.09002 * 113.46631 * 321.85959 * 24 9 7 38 38 H 1.08998 * 113.46717 * 92.24603 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 3.5478 1.4400 -0.7000 6 1 1.4477 2.6526 -0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4944 -2.1237 -0.2251 9 7 3.3492 -1.2197 0.2872 10 6 4.3357 -0.2553 0.7971 11 6 5.1309 -1.4486 1.3518 12 6 4.7121 -1.8958 2.7538 13 7 5.5203 -1.1920 3.7527 14 6 5.3258 -1.4287 5.0651 15 8 4.4780 -2.2273 5.4208 16 6 6.1061 -0.7484 6.0300 17 6 6.0260 -1.1001 7.3373 18 6 5.3084 -2.2617 7.7156 19 6 4.5445 -2.4151 8.8580 20 6 4.0176 -3.7096 8.8287 21 6 4.4635 -4.3156 7.7017 22 7 5.2492 -3.4462 7.0162 23 1 5.6949 -3.6292 6.1743 24 6 4.4349 -2.2090 0.2145 25 1 -0.4850 -0.8368 -0.0746 26 1 4.8594 0.2870 0.0100 27 1 3.9400 0.4021 1.5713 28 1 6.2106 -1.3574 1.2332 29 1 3.6586 -1.6636 2.9097 30 1 4.8659 -2.9702 2.8536 31 1 6.1959 -0.5562 3.4694 32 1 6.7655 0.0508 5.7253 33 1 6.5092 -0.4948 8.0900 34 1 4.3830 -1.6738 9.6266 35 1 3.3731 -4.1505 9.5747 36 1 4.2318 -5.3258 7.3983 37 1 4.1238 -3.2161 0.4924 38 1 4.9842 -2.1823 -0.7266 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665271591.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:13 Heat of formation + Delta-G solvation = 112.946069 kcal Electronic energy + Delta-G solvation = -20773.932825 eV Core-core repulsion = 17620.816422 eV Total energy + Delta-G solvation = -3153.116403 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.21344 -39.59919 -38.54117 -34.54311 -33.73016 -32.39208 -30.79975 -29.42112 -28.10849 -26.07861 -25.31826 -23.36266 -21.78944 -20.90632 -20.26892 -19.81892 -19.03760 -17.90998 -17.38879 -16.50148 -15.80625 -15.33586 -14.89967 -14.52349 -14.39924 -13.94862 -13.73280 -13.44040 -13.32647 -13.19972 -12.90506 -12.64767 -12.18764 -11.96844 -11.76662 -11.60397 -11.06715 -10.81552 -10.45773 -10.10993 -9.97067 -9.79781 -9.50561 -9.16115 -8.93863 -8.72898 -8.55237 -7.59100 -7.18250 -6.29097 -3.22929 0.67714 2.65369 3.05575 3.36531 3.40092 3.46157 3.50308 3.56151 3.61195 4.59575 4.75840 4.84517 4.91559 4.98350 5.14859 5.25401 5.35660 5.44410 5.47205 5.56233 5.71680 5.85228 5.93450 5.98390 6.11877 6.20622 6.30474 6.31517 6.34809 6.35932 6.41531 6.58639 6.84844 7.02475 7.14051 7.20693 7.63811 7.69473 8.25177 8.34112 8.98239 9.51478 10.37666 11.20286 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.023477 B = 0.004090 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.355943 B = 6844.098545 C = 6986.671311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.023 4.023 3 Si 1.063 2.937 4 H -0.294 1.294 5 H -0.282 1.282 6 H -0.295 1.295 7 C -0.306 4.306 8 H 0.081 0.919 9 N -0.623 5.623 10 C 0.105 3.895 11 C -0.147 4.147 12 C 0.148 3.852 13 N -0.721 5.721 14 C 0.533 3.467 15 O -0.544 6.544 16 C -0.246 4.246 17 C 0.022 3.978 18 C 0.013 3.987 19 C -0.158 4.158 20 C -0.218 4.218 21 C 0.016 3.984 22 N -0.499 5.499 23 H 0.414 0.586 24 C 0.126 3.874 25 H 0.261 0.739 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.398 0.602 32 H 0.131 0.869 33 H 0.142 0.858 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.159 0.841 37 H 0.046 0.954 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.777 -3.938 14.203 23.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.222 4.222 3 Si 0.894 3.106 4 H -0.222 1.222 5 H -0.208 1.208 6 H -0.223 1.223 7 C -0.432 4.432 8 H 0.099 0.901 9 N -0.351 5.351 10 C -0.021 4.021 11 C -0.166 4.166 12 C 0.024 3.976 13 N -0.371 5.371 14 C 0.324 3.676 15 O -0.425 6.425 16 C -0.268 4.268 17 C 0.002 3.998 18 C -0.099 4.099 19 C -0.183 4.183 20 C -0.242 4.242 21 C -0.122 4.122 22 N -0.091 5.091 23 H 0.254 0.746 24 C -0.001 4.001 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.232 0.768 32 H 0.149 0.851 33 H 0.160 0.840 34 H 0.153 0.847 35 H 0.150 0.850 36 H 0.177 0.823 37 H 0.064 0.936 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 16.775 -2.902 14.241 22.195 hybrid contribution 0.567 -1.252 -0.960 1.677 sum 17.342 -4.154 13.280 22.234 Atomic orbital electron populations 1.70894 1.05452 1.29573 1.51460 1.25799 0.96528 1.00896 0.99020 0.83770 0.74512 0.75897 0.76393 1.22169 1.20834 1.22252 1.20133 0.80055 0.95759 1.47258 0.90144 1.46237 1.02937 1.09512 1.76408 1.22773 0.90042 0.93247 0.96055 1.23174 0.98296 1.00609 0.94555 1.21008 0.96259 0.95416 0.84868 1.46099 1.39701 1.45176 1.06114 1.17265 0.84430 0.82991 0.82910 1.90930 1.35216 1.36152 1.80152 1.22069 1.05041 1.05414 0.94303 1.20793 0.91467 0.92031 0.95534 1.17968 1.08197 0.88770 0.94973 1.21283 1.02074 0.97461 0.97508 1.20692 1.07524 0.95860 1.00162 1.21920 0.98406 0.96696 0.95160 1.42259 1.37249 1.10517 1.19093 0.74625 1.22338 0.88944 0.94680 0.94113 0.92829 0.93576 0.93027 0.90431 0.89918 0.91915 0.76832 0.85102 0.84025 0.84716 0.84968 0.82323 0.93560 0.94325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.00 13.70 55.49 0.76 -29.23 16 2 C -0.02 -0.70 5.50 -17.43 -0.10 -0.79 16 3 Si 1.06 26.92 25.54 -169.99 -4.34 22.58 16 4 H -0.29 -7.21 7.00 56.52 0.40 -6.82 16 5 H -0.28 -6.53 5.59 56.52 0.32 -6.22 16 6 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 7 C -0.31 -8.92 11.04 -15.06 -0.17 -9.09 16 8 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 9 N -0.62 -15.20 3.45 -184.59 -0.64 -15.83 16 10 C 0.10 2.13 5.11 -8.37 -0.04 2.09 16 11 C -0.15 -2.34 4.17 -89.97 -0.37 -2.72 16 12 C 0.15 2.40 5.51 -4.04 -0.02 2.38 16 13 N -0.72 -9.50 5.55 -63.25 -0.35 -9.86 16 14 C 0.53 7.53 6.94 -15.01 -0.10 7.42 16 15 O -0.54 -9.57 11.71 5.11 0.06 -9.51 16 16 C -0.25 -2.61 9.85 -39.27 -0.39 -3.00 16 17 C 0.02 0.23 9.96 -39.21 -0.39 -0.16 16 18 C 0.01 0.17 5.39 -83.91 -0.45 -0.28 16 19 C -0.16 -1.99 10.86 -38.99 -0.42 -2.42 16 20 C -0.22 -2.72 10.81 -39.98 -0.43 -3.15 16 21 C 0.02 0.19 11.90 -16.79 -0.20 -0.01 16 22 N -0.50 -6.43 3.93 -10.56 -0.04 -6.47 16 23 H 0.41 5.09 7.25 -40.82 -0.30 4.79 16 24 C 0.13 2.40 8.25 -8.51 -0.07 2.33 16 25 H 0.26 8.33 8.73 -40.82 -0.36 7.97 16 26 H 0.05 0.91 6.93 -51.93 -0.36 0.55 16 27 H 0.05 1.11 6.36 -51.92 -0.33 0.78 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.08 1.74 7.93 -51.93 -0.41 1.33 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.40 4.05 8.43 -40.82 -0.34 3.70 16 32 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 33 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 36 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.05 0.86 8.12 -51.93 -0.42 0.44 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 315.38 15.07 4.75 4.75 Total: -1.00 -35.85 315.38 -8.17 -44.02 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.21 Total: 6.94 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -3.16 Total: -7.39 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: -0.27 Total: -61.39 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.06 Total: -9.51 kcal Atomic # 14 Polarization: 26.92 SS G_CDS: -4.34 Total: 22.58 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -35.85 -8.17 -44.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665271591.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.967 kcal (2) G-P(sol) polarization free energy of solvation -35.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds