Wall clock time and date at job start Mon Mar 30 2020 02:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99982 * 2 1 4 4 H 1.48492 * 109.47170 * 90.00025 * 3 2 1 5 5 H 1.48500 * 109.46626 * 209.99923 * 3 2 1 6 6 H 1.48498 * 109.47027 * 329.99885 * 3 2 1 7 7 C 1.38816 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00503 * 13.98650 * 7 2 1 9 9 N 1.36940 * 119.99687 * 193.98858 * 7 2 1 10 10 C 1.47070 * 136.05795 * 9.70949 * 9 7 2 11 11 C 1.53757 * 87.88761 * 152.96583 * 10 9 7 12 12 C 1.53000 * 114.57165 * 272.66500 * 11 10 9 13 13 N 1.46499 * 109.47072 * 268.67073 * 12 11 10 14 14 C 1.34778 * 119.99852 * 180.02562 * 13 12 11 15 15 O 1.21784 * 120.00156 * 359.97438 * 14 13 12 16 16 C 1.41516 * 119.99864 * 180.02562 * 14 13 12 17 17 C 1.35615 * 120.00043 * 187.93638 * 16 14 13 18 18 C 1.41678 * 119.99750 * 8.73810 * 17 16 14 19 19 C 1.38283 * 126.25515 * 216.40280 * 18 17 16 20 20 C 1.39788 * 107.07534 * 179.88385 * 19 18 17 21 21 C 1.35502 * 107.91167 * 0.39016 * 20 19 18 22 22 N 1.35759 * 108.90757 * 359.75856 * 21 20 19 23 23 H 0.96998 * 125.68894 * 179.97438 * 22 21 20 24 24 C 1.47064 * 136.05662 * 190.08584 * 9 7 2 25 25 H 0.97005 * 119.99798 * 174.90484 * 1 2 3 26 26 H 1.08994 * 113.46650 * 267.69843 * 10 9 7 27 27 H 1.09007 * 113.46646 * 38.13885 * 10 9 7 28 28 H 1.08994 * 114.08781 * 139.77741 * 11 10 9 29 29 H 1.08997 * 109.47442 * 28.67340 * 12 11 10 30 30 H 1.09001 * 109.46943 * 148.67363 * 12 11 10 31 31 H 0.96998 * 120.00394 * 359.97438 * 13 12 11 32 32 H 1.08000 * 119.99890 * 7.93209 * 16 14 13 33 33 H 1.08001 * 120.00185 * 188.74284 * 17 16 14 34 34 H 1.07998 * 126.46642 * 0.03530 * 19 18 17 35 35 H 1.07999 * 126.04618 * 180.11683 * 20 19 18 36 36 H 1.07997 * 125.54667 * 179.74042 * 21 20 19 37 37 H 1.09002 * 113.46631 * 321.85959 * 24 9 7 38 38 H 1.08998 * 113.46717 * 92.24603 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 3.5478 1.4400 -0.7000 6 1 1.4477 2.6526 -0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4944 -2.1237 -0.2251 9 7 3.3492 -1.2197 0.2872 10 6 4.3357 -0.2553 0.7971 11 6 5.1309 -1.4486 1.3518 12 6 4.7121 -1.8958 2.7538 13 7 5.5203 -1.1920 3.7527 14 6 5.3258 -1.4287 5.0651 15 8 4.4780 -2.2273 5.4208 16 6 6.1061 -0.7484 6.0300 17 6 6.0260 -1.1001 7.3373 18 6 5.3084 -2.2617 7.7156 19 6 4.5445 -2.4151 8.8580 20 6 4.0176 -3.7096 8.8287 21 6 4.4635 -4.3156 7.7017 22 7 5.2492 -3.4462 7.0162 23 1 5.6949 -3.6292 6.1743 24 6 4.4349 -2.2090 0.2145 25 1 -0.4850 -0.8368 -0.0746 26 1 4.8594 0.2870 0.0100 27 1 3.9400 0.4021 1.5713 28 1 6.2106 -1.3574 1.2332 29 1 3.6586 -1.6636 2.9097 30 1 4.8659 -2.9702 2.8536 31 1 6.1959 -0.5562 3.4694 32 1 6.7655 0.0508 5.7253 33 1 6.5092 -0.4948 8.0900 34 1 4.3830 -1.6738 9.6266 35 1 3.3731 -4.1505 9.5747 36 1 4.2318 -5.3258 7.3983 37 1 4.1238 -3.2161 0.4924 38 1 4.9842 -2.1823 -0.7266 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665271591.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:13 Heat of formation + Delta-G solvation = 86.304822 kcal Electronic energy + Delta-G solvation = -20775.088076 eV Core-core repulsion = 17620.816422 eV Total energy + Delta-G solvation = -3154.271654 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.15027 -40.83069 -39.95456 -35.80839 -34.63902 -34.52514 -31.72838 -30.96370 -29.31708 -27.53804 -26.90927 -24.54388 -23.45257 -21.91633 -21.17865 -21.08878 -20.35389 -19.48262 -18.85326 -17.61181 -17.09734 -16.88022 -16.19246 -15.85566 -15.60979 -15.45659 -15.26896 -14.79234 -14.47729 -14.28658 -14.07443 -13.71155 -13.50039 -13.13532 -13.06607 -12.89999 -12.79772 -12.58845 -12.02169 -11.85841 -11.40730 -11.11561 -10.93975 -10.84724 -10.78978 -10.09878 -9.54015 -9.24000 -8.63692 -8.50371 -5.48488 -0.17627 1.35807 1.48642 1.63597 1.71602 2.09868 2.30275 2.53194 2.53602 2.67771 3.06736 3.14971 3.46740 3.84733 4.06237 4.18735 4.39875 4.41481 4.45642 4.56064 4.63514 4.67363 4.70183 4.70743 4.73665 4.83092 4.94857 5.10300 5.21440 5.23826 5.33644 5.43245 5.49742 5.53537 5.94396 6.12138 6.29691 6.65616 6.68606 6.78799 7.32479 7.33188 8.28062 8.87182 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.023477 B = 0.004090 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.355943 B = 6844.098545 C = 6986.671311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.089 4.089 3 Si 1.105 2.895 4 H -0.284 1.284 5 H -0.242 1.242 6 H -0.304 1.304 7 C -0.291 4.291 8 H 0.042 0.958 9 N -0.660 5.660 10 C 0.096 3.904 11 C -0.109 4.109 12 C 0.157 3.843 13 N -0.709 5.709 14 C 0.525 3.475 15 O -0.587 6.587 16 C -0.248 4.248 17 C 0.027 3.973 18 C -0.005 4.005 19 C -0.178 4.178 20 C -0.235 4.235 21 C -0.003 4.003 22 N -0.504 5.504 23 H 0.414 0.586 24 C 0.120 3.880 25 H 0.244 0.756 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.137 0.863 29 H 0.026 0.974 30 H 0.066 0.934 31 H 0.417 0.583 32 H 0.170 0.830 33 H 0.182 0.818 34 H 0.152 0.848 35 H 0.145 0.855 36 H 0.177 0.823 37 H 0.041 0.959 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.944 -2.554 14.775 26.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.280 4.280 3 Si 0.930 3.070 4 H -0.211 1.211 5 H -0.166 1.166 6 H -0.232 1.232 7 C -0.419 4.419 8 H 0.060 0.940 9 N -0.390 5.390 10 C -0.028 4.028 11 C -0.128 4.128 12 C 0.033 3.967 13 N -0.360 5.360 14 C 0.318 3.682 15 O -0.471 6.471 16 C -0.270 4.270 17 C 0.007 3.993 18 C -0.117 4.117 19 C -0.203 4.203 20 C -0.259 4.259 21 C -0.140 4.140 22 N -0.096 5.096 23 H 0.253 0.747 24 C -0.005 4.005 25 H 0.053 0.947 26 H 0.087 0.913 27 H 0.056 0.944 28 H 0.154 0.846 29 H 0.044 0.956 30 H 0.085 0.915 31 H 0.254 0.746 32 H 0.188 0.812 33 H 0.199 0.801 34 H 0.170 0.830 35 H 0.163 0.837 36 H 0.194 0.806 37 H 0.060 0.940 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 21.034 -1.538 14.811 25.771 hybrid contribution -0.721 -1.859 -1.093 2.274 sum 20.313 -3.396 13.717 24.745 Atomic orbital electron populations 1.71015 1.06973 1.28560 1.55272 1.27227 0.96506 1.04832 0.99480 0.83303 0.74928 0.71556 0.77234 1.21050 1.16602 1.23192 1.19959 0.83113 0.94170 1.44640 0.94033 1.46311 1.02585 1.13002 1.77052 1.23058 0.89379 0.94067 0.96322 1.22943 1.00768 0.96539 0.92574 1.20660 0.93728 0.96076 0.86243 1.45893 1.39500 1.45244 1.05370 1.17932 0.84221 0.82497 0.83543 1.90926 1.37224 1.38126 1.80778 1.22206 1.05320 1.06128 0.93310 1.21265 0.90430 0.91148 0.96455 1.18539 1.08539 0.89611 0.95020 1.21650 1.02390 0.97993 0.98261 1.21026 1.07923 0.96298 1.00692 1.22349 0.98569 0.97697 0.95386 1.42333 1.37303 1.10874 1.19079 0.74670 1.22635 0.87528 0.93804 0.96545 0.94708 0.91261 0.94355 0.84584 0.95557 0.91531 0.74553 0.81208 0.80112 0.83028 0.83698 0.80587 0.94049 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -65.42 13.70 21.65 0.30 -65.13 16 2 C -0.09 -5.50 5.50 84.86 0.47 -5.04 16 3 Si 1.11 53.95 25.54 68.60 1.75 55.70 16 4 H -0.28 -13.21 7.00 99.48 0.70 -12.52 16 5 H -0.24 -10.09 5.59 99.48 0.56 -9.53 16 6 H -0.30 -15.14 7.11 99.48 0.71 -14.43 16 7 C -0.29 -17.46 11.04 84.03 0.93 -16.53 16 8 H 0.04 2.73 8.06 -2.91 -0.02 2.70 16 9 N -0.66 -31.57 3.45 -737.91 -2.54 -34.11 16 10 C 0.10 3.58 5.11 83.27 0.43 4.00 16 11 C -0.11 -3.03 4.17 -10.37 -0.04 -3.07 16 12 C 0.16 4.84 5.51 86.38 0.48 5.31 16 13 N -0.71 -16.51 5.55 -472.21 -2.62 -19.12 16 14 C 0.53 13.74 6.94 85.05 0.59 14.33 16 15 O -0.59 -20.48 11.71 -4.62 -0.05 -20.54 16 16 C -0.25 -4.37 9.85 22.47 0.22 -4.15 16 17 C 0.03 0.47 9.96 22.51 0.22 0.70 16 18 C 0.00 -0.11 5.39 39.08 0.21 0.10 16 19 C -0.18 -4.34 10.86 22.66 0.25 -4.09 16 20 C -0.24 -5.83 10.81 22.01 0.24 -5.59 16 21 C 0.00 -0.07 11.90 83.45 0.99 0.93 16 22 N -0.50 -12.78 3.93 -187.33 -0.74 -13.52 16 23 H 0.41 10.05 7.25 -92.71 -0.67 9.37 16 24 C 0.12 4.25 8.25 83.18 0.69 4.94 16 25 H 0.24 16.56 8.73 -92.70 -0.81 15.75 16 26 H 0.07 2.33 6.93 -2.39 -0.02 2.31 16 27 H 0.04 1.54 6.36 -2.38 -0.02 1.53 16 28 H 0.14 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.03 1.11 7.93 -2.39 -0.02 1.09 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.99 16 31 H 0.42 6.44 8.43 -92.71 -0.78 5.66 16 32 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 33 H 0.18 1.62 8.06 -2.91 -0.02 1.59 16 34 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 35 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 36 H 0.18 3.41 8.06 -2.91 -0.02 3.38 16 37 H 0.04 1.49 8.12 -2.39 -0.02 1.47 16 38 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -83.78 315.38 1.19 -82.59 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: -0.57 Total: 22.29 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: 5.66 Total: -8.17 kcal Atomic # 7 Polarization: -126.28 SS G_CDS: -5.60 Total: -131.88 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.05 Total: -20.54 kcal Atomic # 14 Polarization: 53.95 SS G_CDS: 1.75 Total: 55.70 kcal Total: -83.78 1.19 -82.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665271591.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.896 kcal (2) G-P(sol) polarization free energy of solvation -83.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds