Wall clock time and date at job start Mon Mar 30 2020 02:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 120.00025 * 2 1 4 4 H 1.48495 * 109.47191 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47007 * 299.99591 * 3 2 1 6 6 H 1.48498 * 109.47178 * 59.99262 * 3 2 1 7 7 C 1.38805 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00200 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00418 * 0.27722 * 7 2 1 10 10 C 1.46501 * 120.00266 * 179.72141 * 9 7 2 11 11 C 1.52995 * 109.47232 * 172.35354 * 10 9 7 12 12 H 1.09006 * 109.87399 * 44.58374 * 11 10 9 13 13 C 1.54325 * 109.88477 * 165.76432 * 11 10 9 14 14 C 1.55160 * 102.94149 * 141.60960 * 13 11 10 15 15 C 1.54906 * 101.58087 * 324.49612 * 14 13 11 16 16 N 1.47029 * 109.88245 * 283.56997 * 11 10 9 17 17 C 1.34778 * 125.64265 * 61.67678 * 16 11 10 18 18 O 1.21509 * 120.00828 * 7.91885 * 17 16 11 19 19 C 1.48155 * 119.99635 * 187.91775 * 17 16 11 20 20 C 1.39816 * 120.91857 * 10.25258 * 19 17 16 21 21 C 1.38153 * 118.99678 * 179.75663 * 20 19 17 22 22 N 1.31815 * 120.89599 * 0.53608 * 21 20 19 23 23 C 1.31812 * 122.04914 * 359.73550 * 22 21 20 24 24 C 1.38150 * 120.89542 * 359.97438 * 23 22 21 25 25 H 0.96998 * 120.00439 * 0.02562 * 1 2 3 26 26 H 0.96995 * 120.00052 * 359.72731 * 9 7 2 27 27 H 1.08995 * 109.47262 * 292.35595 * 10 9 7 28 28 H 1.09000 * 109.46871 * 52.35171 * 10 9 7 29 29 H 1.08996 * 110.71543 * 259.97191 * 13 11 10 30 30 H 1.09001 * 110.72009 * 23.24701 * 13 11 10 31 31 H 1.08997 * 110.99995 * 206.42309 * 14 13 11 32 32 H 1.09001 * 111.03507 * 82.59183 * 14 13 11 33 33 H 1.09000 * 110.36892 * 278.16789 * 15 14 13 34 34 H 1.09002 * 110.45754 * 155.89783 * 15 14 13 35 35 H 1.07996 * 120.50646 * 0.02562 * 20 19 17 36 36 H 1.07998 * 119.55328 * 180.27226 * 21 20 19 37 37 H 1.07998 * 119.54973 * 179.97438 * 23 22 21 38 38 H 1.08000 * 120.49970 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 -0.0047 10 6 2.0581 -3.6568 -0.0103 11 6 1.0750 -4.8141 0.1766 12 1 0.2009 -4.6638 -0.4571 13 6 1.7622 -6.1492 -0.1796 14 6 1.1960 -7.1262 0.8846 15 6 1.0825 -6.2040 2.1241 16 7 0.6629 -4.8976 1.5855 17 6 0.0090 -3.9386 2.2706 18 8 -0.4156 -2.9593 1.6901 19 6 -0.1920 -4.0787 3.7318 20 6 0.4640 -5.0797 4.4545 21 6 0.2515 -5.1710 5.8166 22 7 -0.5640 -4.3379 6.4317 23 6 -1.2060 -3.3839 5.7873 24 6 -1.0475 -3.2171 4.4251 25 1 -0.4851 0.8400 -0.0004 26 1 0.3556 -2.3881 -0.0047 27 1 2.5782 -3.7718 -0.9612 28 1 2.7833 -3.6611 0.8034 29 1 1.4848 -6.4698 -1.1837 30 1 2.8448 -6.0626 -0.0864 31 1 1.8894 -7.9464 1.0701 32 1 0.2177 -7.5040 0.5877 33 1 2.0483 -6.1168 2.6218 34 1 0.3330 -6.5872 2.8167 35 1 1.1302 -5.7685 3.9564 36 1 0.7570 -5.9381 6.3843 37 1 -1.8650 -2.7238 6.3317 38 1 -1.5770 -2.4336 3.9035 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671262450.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:36 Heat of formation + Delta-G solvation = 48.555632 kcal Electronic energy + Delta-G solvation = -21633.397909 eV Core-core repulsion = 18477.489327 eV Total energy + Delta-G solvation = -3155.908582 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.62235 -39.25091 -37.06693 -34.41273 -32.85058 -31.48666 -31.26348 -30.78576 -28.77216 -25.48117 -24.57855 -23.45162 -22.78664 -21.55881 -21.11507 -19.17341 -17.65696 -16.73810 -16.53148 -16.10933 -15.82498 -15.03696 -14.63269 -14.41005 -14.07843 -13.74629 -13.55810 -13.41760 -13.17454 -12.94835 -12.87080 -12.44174 -11.82769 -11.70337 -11.55618 -11.18292 -10.95488 -10.73857 -10.66064 -10.50324 -9.99548 -9.72089 -9.70560 -9.50077 -9.15999 -9.11508 -8.72148 -8.22094 -6.65392 -5.51780 -2.80317 0.89350 1.13091 3.15509 3.30151 3.52529 3.57291 3.59819 3.99086 4.40148 4.45435 4.50345 4.71030 4.76513 4.88877 4.97203 5.03369 5.14859 5.27274 5.35225 5.45577 5.58346 5.69592 5.74880 5.77348 5.81520 5.87037 5.94697 6.02923 6.17187 6.20227 6.41428 6.54739 6.64893 6.78408 6.94608 7.83133 7.86460 7.91069 8.56454 8.73083 9.77928 10.41659 10.80430 11.68934 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014385 B = 0.006854 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.968063 B = 4084.068967 C = 5588.111401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 0.897 3.103 4 H -0.283 1.283 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.239 4.239 8 H 0.062 0.938 9 N -0.723 5.723 10 C 0.145 3.855 11 C 0.131 3.869 12 H 0.076 0.924 13 C -0.124 4.124 14 C -0.134 4.134 15 C 0.091 3.909 16 N -0.612 5.612 17 C 0.553 3.447 18 O -0.453 6.453 19 C -0.068 4.068 20 C -0.171 4.171 21 C 0.087 3.913 22 N -0.479 5.479 23 C 0.092 3.908 24 C -0.114 4.114 25 H 0.249 0.751 26 H 0.399 0.601 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.158 0.842 36 H 0.157 0.843 37 H 0.160 0.840 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.533 -17.612 7.637 19.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.207 4.207 3 Si 0.729 3.271 4 H -0.208 1.208 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.371 4.371 8 H 0.080 0.920 9 N -0.373 5.373 10 C 0.016 3.984 11 C 0.028 3.972 12 H 0.094 0.906 13 C -0.163 4.163 14 C -0.172 4.172 15 C -0.032 4.032 16 N -0.349 5.349 17 C 0.339 3.661 18 O -0.322 6.322 19 C -0.079 4.079 20 C -0.191 4.191 21 C -0.069 4.069 22 N -0.189 5.189 23 C -0.065 4.065 24 C -0.135 4.135 25 H 0.059 0.941 26 H 0.239 0.761 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.175 0.825 36 H 0.174 0.826 37 H 0.178 0.822 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.209 -16.920 8.233 18.818 hybrid contribution 0.506 1.102 -0.801 1.454 sum 0.715 -15.817 7.432 17.491 Atomic orbital electron populations 1.69752 1.04769 1.24625 1.57237 1.24694 0.95392 0.97171 1.03420 0.86263 0.78755 0.85005 0.77058 1.20836 1.22037 1.22117 1.19181 0.90578 0.84605 1.42730 0.91954 1.42742 1.06970 0.98982 1.88632 1.21028 0.93285 0.86496 0.97629 1.21915 0.98133 0.95566 0.81605 0.90552 1.22641 1.00811 0.93476 0.99330 1.22812 1.01961 0.97397 0.95027 1.22677 0.99679 0.84009 0.96864 1.48266 1.58328 1.15984 1.12336 1.17849 0.79668 0.82780 0.85766 1.90965 1.45253 1.27638 1.68370 1.20505 0.97122 0.95790 0.94507 1.23258 1.00700 0.99015 0.96096 1.22702 0.95262 0.97250 0.91733 1.67506 1.06595 1.03872 1.40895 1.22755 0.97208 0.95117 0.91397 1.22416 0.96991 0.98636 0.95419 0.94059 0.76133 0.96314 0.96284 0.90023 0.90276 0.89963 0.90618 0.91217 0.90187 0.82527 0.82597 0.82238 0.83217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.59 13.06 55.49 0.72 -28.87 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.90 23.71 29.55 -169.99 -5.02 18.69 16 4 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.71 7.11 56.52 0.40 -7.30 16 6 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 7 C -0.24 -7.20 9.99 -15.06 -0.15 -7.35 16 8 H 0.06 1.83 7.83 -52.48 -0.41 1.42 16 9 N -0.72 -19.84 4.44 -59.91 -0.27 -20.11 16 10 C 0.14 3.08 5.61 -4.04 -0.02 3.05 16 11 C 0.13 2.18 3.02 -66.95 -0.20 1.98 16 12 H 0.08 1.41 8.09 -51.93 -0.42 0.99 16 13 C -0.12 -1.39 6.44 -24.89 -0.16 -1.55 16 14 C -0.13 -1.17 7.09 -24.58 -0.17 -1.35 16 15 C 0.09 0.96 4.91 -2.54 -0.01 0.95 16 16 N -0.61 -9.81 3.06 -164.01 -0.50 -10.31 16 17 C 0.55 10.70 7.50 -12.19 -0.09 10.61 16 18 O -0.45 -11.22 13.24 5.36 0.07 -11.15 16 19 C -0.07 -1.09 5.87 -104.65 -0.61 -1.71 16 20 C -0.17 -2.12 8.37 -39.02 -0.33 -2.45 16 21 C 0.09 1.02 11.17 -17.59 -0.20 0.82 16 22 N -0.48 -6.49 10.33 -13.30 -0.14 -6.63 16 23 C 0.09 1.23 11.17 -17.59 -0.20 1.03 16 24 C -0.11 -1.78 9.68 -39.03 -0.38 -2.16 16 25 H 0.25 7.77 8.31 -40.82 -0.34 7.43 16 26 H 0.40 11.74 5.13 -40.82 -0.21 11.53 16 27 H 0.02 0.40 8.08 -51.93 -0.42 -0.02 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 0.85 7.85 -51.93 -0.41 0.44 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.66 7.19 -51.93 -0.37 0.29 16 34 H 0.08 0.73 6.25 -51.93 -0.32 0.41 16 35 H 0.16 1.54 3.64 -52.49 -0.19 1.35 16 36 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 38 H 0.15 2.47 7.78 -52.49 -0.41 2.06 16 LS Contribution 310.15 15.07 4.67 4.67 Total: -1.00 -37.14 310.15 -7.92 -45.06 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -4.84 Total: 7.16 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -2.62 Total: 1.47 kcal Atomic # 7 Polarization: -65.73 SS G_CDS: -0.18 Total: -65.91 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.07 Total: -11.15 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -5.02 Total: 18.69 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -37.14 -7.92 -45.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671262450.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.617 kcal (2) G-P(sol) polarization free energy of solvation -37.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds