Wall clock time and date at job start Mon Mar 30 2020 02:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 120.00025 * 2 1 4 4 H 1.48495 * 109.47191 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47007 * 299.99591 * 3 2 1 6 6 H 1.48498 * 109.47178 * 59.99262 * 3 2 1 7 7 C 1.38805 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00200 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00418 * 0.27722 * 7 2 1 10 10 C 1.46501 * 120.00266 * 179.72141 * 9 7 2 11 11 C 1.52995 * 109.47232 * 172.35354 * 10 9 7 12 12 H 1.09006 * 109.87399 * 44.58374 * 11 10 9 13 13 C 1.54325 * 109.88477 * 165.76432 * 11 10 9 14 14 C 1.55160 * 102.94149 * 141.60960 * 13 11 10 15 15 C 1.54906 * 101.58087 * 324.49612 * 14 13 11 16 16 N 1.47029 * 109.88245 * 283.56997 * 11 10 9 17 17 C 1.34778 * 125.64265 * 61.67678 * 16 11 10 18 18 O 1.21509 * 120.00828 * 7.91885 * 17 16 11 19 19 C 1.48155 * 119.99635 * 187.91775 * 17 16 11 20 20 C 1.39816 * 120.91857 * 10.25258 * 19 17 16 21 21 C 1.38153 * 118.99678 * 179.75663 * 20 19 17 22 22 N 1.31815 * 120.89599 * 0.53608 * 21 20 19 23 23 C 1.31812 * 122.04914 * 359.73550 * 22 21 20 24 24 C 1.38150 * 120.89542 * 359.97438 * 23 22 21 25 25 H 0.96998 * 120.00439 * 0.02562 * 1 2 3 26 26 H 0.96995 * 120.00052 * 359.72731 * 9 7 2 27 27 H 1.08995 * 109.47262 * 292.35595 * 10 9 7 28 28 H 1.09000 * 109.46871 * 52.35171 * 10 9 7 29 29 H 1.08996 * 110.71543 * 259.97191 * 13 11 10 30 30 H 1.09001 * 110.72009 * 23.24701 * 13 11 10 31 31 H 1.08997 * 110.99995 * 206.42309 * 14 13 11 32 32 H 1.09001 * 111.03507 * 82.59183 * 14 13 11 33 33 H 1.09000 * 110.36892 * 278.16789 * 15 14 13 34 34 H 1.09002 * 110.45754 * 155.89783 * 15 14 13 35 35 H 1.07996 * 120.50646 * 0.02562 * 20 19 17 36 36 H 1.07998 * 119.55328 * 180.27226 * 21 20 19 37 37 H 1.07998 * 119.54973 * 179.97438 * 23 22 21 38 38 H 1.08000 * 120.49970 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 -0.0047 10 6 2.0581 -3.6568 -0.0103 11 6 1.0750 -4.8141 0.1766 12 1 0.2009 -4.6638 -0.4571 13 6 1.7622 -6.1492 -0.1796 14 6 1.1960 -7.1262 0.8846 15 6 1.0825 -6.2040 2.1241 16 7 0.6629 -4.8976 1.5855 17 6 0.0090 -3.9386 2.2706 18 8 -0.4156 -2.9593 1.6901 19 6 -0.1920 -4.0787 3.7318 20 6 0.4640 -5.0797 4.4545 21 6 0.2515 -5.1710 5.8166 22 7 -0.5640 -4.3379 6.4317 23 6 -1.2060 -3.3839 5.7873 24 6 -1.0475 -3.2171 4.4251 25 1 -0.4851 0.8400 -0.0004 26 1 0.3556 -2.3881 -0.0047 27 1 2.5782 -3.7718 -0.9612 28 1 2.7833 -3.6611 0.8034 29 1 1.4848 -6.4698 -1.1837 30 1 2.8448 -6.0626 -0.0864 31 1 1.8894 -7.9464 1.0701 32 1 0.2177 -7.5040 0.5877 33 1 2.0483 -6.1168 2.6218 34 1 0.3330 -6.5872 2.8167 35 1 1.1302 -5.7685 3.9564 36 1 0.7570 -5.9381 6.3843 37 1 -1.8650 -2.7238 6.3317 38 1 -1.5770 -2.4336 3.9035 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671262450.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:35 Heat of formation + Delta-G solvation = 21.430944 kcal Electronic energy + Delta-G solvation = -21634.574124 eV Core-core repulsion = 18477.489327 eV Total energy + Delta-G solvation = -3157.084797 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.80737 -40.39797 -38.42379 -36.33418 -34.20230 -33.12490 -32.52697 -31.92780 -30.32269 -26.92995 -26.08995 -24.64253 -24.25836 -23.02040 -22.09172 -20.50505 -19.29943 -18.41303 -17.70605 -17.30122 -16.90294 -16.66783 -16.25134 -15.71420 -15.35213 -15.16459 -14.89844 -14.82392 -14.47793 -14.40616 -14.08160 -13.72303 -13.32765 -13.15216 -12.95748 -12.75989 -12.65726 -12.23171 -12.01871 -11.83057 -11.63457 -11.51783 -11.04102 -10.96172 -10.88180 -10.41393 -10.17073 -9.58128 -8.86407 -7.84996 -5.14029 -0.26897 0.10179 1.39451 1.42446 1.51762 1.89708 2.01797 2.55533 2.86882 3.37062 3.43481 3.49517 3.62209 3.72192 3.88903 3.98025 4.01950 4.08210 4.24447 4.36212 4.39089 4.54952 4.57486 4.74994 4.79887 4.81404 4.85978 4.88484 5.01440 5.09819 5.13911 5.18157 5.40270 5.45500 5.54747 5.63797 6.32287 6.56587 6.88627 7.22850 7.43890 8.27491 8.51771 9.36791 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014385 B = 0.006854 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.968063 B = 4084.068967 C = 5588.111401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.077 4.077 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.290 1.290 6 H -0.297 1.297 7 C -0.246 4.246 8 H 0.067 0.933 9 N -0.740 5.740 10 C 0.141 3.859 11 C 0.130 3.870 12 H 0.046 0.954 13 C -0.114 4.114 14 C -0.118 4.118 15 C 0.077 3.923 16 N -0.610 5.610 17 C 0.541 3.459 18 O -0.528 6.528 19 C -0.092 4.092 20 C -0.157 4.157 21 C 0.098 3.902 22 N -0.489 5.489 23 C 0.096 3.904 24 C -0.140 4.140 25 H 0.244 0.756 26 H 0.386 0.614 27 H 0.028 0.972 28 H 0.015 0.985 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.123 0.877 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.188 0.812 36 H 0.203 0.797 37 H 0.183 0.817 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.765 -20.777 9.105 22.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.270 4.270 3 Si 0.798 3.202 4 H -0.190 1.190 5 H -0.217 1.217 6 H -0.225 1.225 7 C -0.379 4.379 8 H 0.085 0.915 9 N -0.388 5.388 10 C 0.013 3.987 11 C 0.026 3.974 12 H 0.065 0.935 13 C -0.152 4.152 14 C -0.156 4.156 15 C -0.043 4.043 16 N -0.345 5.345 17 C 0.329 3.671 18 O -0.403 6.403 19 C -0.103 4.103 20 C -0.176 4.176 21 C -0.059 4.059 22 N -0.198 5.198 23 C -0.060 4.060 24 C -0.160 4.160 25 H 0.053 0.947 26 H 0.224 0.776 27 H 0.046 0.954 28 H 0.033 0.967 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.142 0.858 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.119 0.881 35 H 0.205 0.795 36 H 0.220 0.780 37 H 0.200 0.800 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.499 -20.175 9.709 22.528 hybrid contribution -0.141 1.955 -1.234 2.316 sum 2.358 -18.220 8.475 20.232 Atomic orbital electron populations 1.69967 1.06548 1.24987 1.59038 1.25583 0.96331 1.00921 1.04144 0.85140 0.78198 0.80213 0.76624 1.19028 1.21712 1.22468 1.19609 0.90930 0.86034 1.41313 0.91535 1.42999 1.06745 1.00483 1.88532 1.21255 0.93996 0.85909 0.97496 1.21899 0.96363 0.96997 0.82104 0.93536 1.22646 1.00989 0.90479 1.01118 1.22845 1.03150 0.97195 0.92412 1.23136 1.01239 0.81481 0.98472 1.48400 1.56699 1.17299 1.12088 1.18517 0.78948 0.82405 0.87200 1.90922 1.48620 1.30737 1.69985 1.20455 0.98982 0.97923 0.92976 1.23557 0.99837 0.97835 0.96357 1.23469 0.93858 0.97025 0.91588 1.67628 1.07069 1.04116 1.41031 1.23012 0.97250 0.95422 0.90286 1.22361 0.98144 0.98919 0.96624 0.94720 0.77632 0.95428 0.96709 0.88525 0.89030 0.85850 0.90203 0.88905 0.88140 0.79510 0.78036 0.80029 0.85944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -64.94 13.06 21.65 0.28 -64.65 16 2 C -0.08 -4.89 5.50 84.86 0.47 -4.43 16 3 Si 0.97 50.28 29.55 68.60 2.03 52.31 16 4 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 5 H -0.29 -14.78 7.11 99.48 0.71 -14.08 16 6 H -0.30 -15.45 7.11 99.48 0.71 -14.75 16 7 C -0.25 -15.30 9.99 84.03 0.84 -14.46 16 8 H 0.07 3.96 7.83 -2.91 -0.02 3.93 16 9 N -0.74 -42.47 4.44 -343.46 -1.53 -43.99 16 10 C 0.14 6.10 5.61 86.38 0.48 6.59 16 11 C 0.13 4.35 3.02 45.34 0.14 4.49 16 12 H 0.05 1.82 8.09 -2.38 -0.02 1.80 16 13 C -0.11 -2.21 6.44 31.78 0.20 -2.01 16 14 C -0.12 -1.51 7.09 31.99 0.23 -1.29 16 15 C 0.08 1.35 4.91 86.86 0.43 1.77 16 16 N -0.61 -19.32 3.06 -791.09 -2.42 -21.75 16 17 C 0.54 21.94 7.50 86.88 0.65 22.59 16 18 O -0.53 -28.41 13.24 -3.74 -0.05 -28.46 16 19 C -0.09 -3.01 5.87 -19.88 -0.12 -3.13 16 20 C -0.16 -3.46 8.37 22.63 0.19 -3.27 16 21 C 0.10 1.91 11.17 84.68 0.95 2.85 16 22 N -0.49 -12.09 10.33 -196.00 -2.03 -14.11 16 23 C 0.10 2.54 11.17 84.67 0.95 3.49 16 24 C -0.14 -4.61 9.68 22.63 0.22 -4.39 16 25 H 0.24 16.01 8.31 -92.71 -0.77 15.24 16 26 H 0.39 24.29 5.13 -92.71 -0.48 23.82 16 27 H 0.03 1.16 8.08 -2.39 -0.02 1.14 16 28 H 0.01 0.65 8.14 -2.39 -0.02 0.64 16 29 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.09 1.60 7.85 -2.39 -0.02 1.58 16 31 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.09 1.27 7.19 -2.39 -0.02 1.25 16 34 H 0.10 1.39 6.25 -2.39 -0.01 1.38 16 35 H 0.19 2.83 3.64 -2.91 -0.01 2.82 16 36 H 0.20 2.07 8.06 -2.91 -0.02 2.04 16 37 H 0.18 3.76 8.06 -2.91 -0.02 3.73 16 38 H 0.12 4.61 7.78 -2.91 -0.02 4.58 16 Total: -1.00 -88.11 310.15 2.51 -85.60 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: 0.60 Total: 26.27 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 5.62 Total: 8.80 kcal Atomic # 7 Polarization: -138.82 SS G_CDS: -5.69 Total: -144.51 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.05 Total: -28.46 kcal Atomic # 14 Polarization: 50.28 SS G_CDS: 2.03 Total: 52.31 kcal Total: -88.11 2.51 -85.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671262450.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.028 kcal (2) G-P(sol) polarization free energy of solvation -88.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds