Wall clock time and date at job start Mon Mar 30 2020 02:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00121 * 2 1 4 4 H 1.48504 * 109.47132 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47340 * 239.99884 * 3 2 1 6 6 H 1.48503 * 109.47251 * 119.99887 * 3 2 1 7 7 C 1.38811 * 119.99672 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00162 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00169 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00037 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47366 * 187.43282 * 10 9 7 12 12 H 1.09007 * 109.87583 * 313.07975 * 11 10 9 13 13 C 1.54323 * 109.88571 * 191.90194 * 11 10 9 14 14 C 1.55165 * 102.94038 * 218.39313 * 13 11 10 15 15 C 1.54904 * 101.58297 * 35.49960 * 14 13 11 16 16 N 1.47023 * 109.88016 * 74.09201 * 11 10 9 17 17 C 1.34774 * 125.64872 * 298.32653 * 16 11 10 18 18 O 1.21512 * 120.00017 * 4.49989 * 17 16 11 19 19 C 1.48149 * 120.00143 * 184.50358 * 17 16 11 20 20 C 1.39820 * 120.92145 * 338.03220 * 19 17 16 21 21 C 1.38152 * 119.00263 * 179.79776 * 20 19 17 22 22 N 1.31811 * 120.89514 * 0.49074 * 21 20 19 23 23 C 1.31814 * 122.04991 * 359.73619 * 22 21 20 24 24 C 1.38151 * 120.89548 * 0.02562 * 23 22 21 25 25 H 0.96999 * 120.00478 * 179.97438 * 1 2 3 26 26 H 0.96996 * 120.00129 * 359.97438 * 9 7 2 27 27 H 1.08995 * 109.47402 * 307.43910 * 10 9 7 28 28 H 1.09011 * 109.46635 * 67.44033 * 10 9 7 29 29 H 1.08999 * 110.71656 * 336.75165 * 13 11 10 30 30 H 1.08997 * 110.72230 * 100.03003 * 13 11 10 31 31 H 1.08997 * 111.00333 * 277.42551 * 14 13 11 32 32 H 1.09003 * 111.03439 * 153.58851 * 14 13 11 33 33 H 1.09000 * 110.36577 * 204.14906 * 15 14 13 34 34 H 1.09003 * 110.36773 * 81.82962 * 15 14 13 35 35 H 1.07998 * 120.49880 * 359.97438 * 20 19 17 36 36 H 1.08000 * 119.55073 * 180.22224 * 21 20 19 37 37 H 1.07995 * 119.55036 * 180.02562 * 23 22 21 38 38 H 1.07997 * 120.49821 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1040 1.6964 -1.2124 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 6 1.0741 -4.8136 -0.1880 12 1 0.2219 -4.6865 0.4798 13 6 1.7792 -6.1547 0.1048 14 6 1.1806 -7.1033 -0.9673 15 6 1.0197 -6.1462 -2.1745 16 7 0.6134 -4.8582 -1.5835 17 6 -0.0681 -3.8833 -2.2172 18 8 -0.2801 -2.8267 -1.6559 19 6 -0.5589 -4.1000 -3.5982 20 6 0.0248 -5.0647 -4.4250 21 6 -0.4671 -5.2364 -5.7046 22 7 -1.4649 -4.4997 -6.1506 23 6 -2.0403 -3.5767 -5.4060 24 6 -1.6148 -3.3417 -4.1128 25 1 -0.4851 -0.8400 -0.0004 26 1 0.3555 -2.3880 0.0002 27 1 2.7800 -3.6588 -0.8181 28 1 2.5818 -3.7747 0.9470 29 1 2.8574 -6.0595 -0.0234 30 1 1.5385 -6.5059 1.1082 31 1 0.2148 -7.4944 -0.6474 32 1 1.8702 -7.9145 -1.2009 33 1 0.2474 -6.5141 -2.8500 34 1 1.9672 -6.0391 -2.7027 35 1 0.8459 -5.6684 -4.0679 36 1 -0.0252 -5.9815 -6.3495 37 1 -2.8555 -2.9964 -5.8123 38 1 -2.0906 -2.5835 -3.5085 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671262451.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:39 Heat of formation + Delta-G solvation = 52.328674 kcal Electronic energy + Delta-G solvation = -21702.232073 eV Core-core repulsion = 18546.487103 eV Total energy + Delta-G solvation = -3155.744970 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.70394 -39.34501 -37.15443 -34.62940 -32.92873 -31.55222 -31.28887 -30.85886 -28.57241 -25.43954 -24.39450 -23.49625 -22.80547 -21.77271 -21.16567 -19.23220 -17.72403 -16.82788 -16.61243 -16.20275 -15.92345 -15.41963 -14.68906 -14.34437 -13.98351 -13.79836 -13.55493 -13.47009 -13.31747 -13.19154 -12.92741 -12.67134 -12.01961 -11.76619 -11.62265 -11.09707 -10.91936 -10.71132 -10.57421 -10.42087 -9.87290 -9.80598 -9.74739 -9.22448 -9.20683 -8.87592 -8.66752 -8.30971 -6.63644 -5.81015 -2.76178 0.83016 1.05492 3.07748 3.17390 3.61693 3.66979 3.84044 3.87442 4.34239 4.36897 4.44256 4.67160 4.81483 4.83560 4.93233 4.95639 5.06548 5.21920 5.29331 5.39155 5.50252 5.63944 5.69913 5.71746 5.79581 5.84074 5.88993 5.95463 6.08605 6.13436 6.32948 6.43142 6.57154 6.72910 6.87878 7.74449 7.84364 8.02634 8.53207 9.11839 9.65698 10.48331 10.66034 11.70116 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014904 B = 0.006737 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.297913 B = 4155.277783 C = 5644.069499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.043 4.043 3 Si 1.076 2.924 4 H -0.286 1.286 5 H -0.300 1.300 6 H -0.298 1.298 7 C -0.330 4.330 8 H 0.053 0.947 9 N -0.731 5.731 10 C 0.151 3.849 11 C 0.129 3.871 12 H 0.074 0.926 13 C -0.124 4.124 14 C -0.134 4.134 15 C 0.088 3.912 16 N -0.609 5.609 17 C 0.552 3.448 18 O -0.457 6.457 19 C -0.068 4.068 20 C -0.166 4.166 21 C 0.089 3.911 22 N -0.478 5.478 23 C 0.094 3.906 24 C -0.116 4.116 25 H 0.264 0.736 26 H 0.383 0.617 27 H 0.019 0.981 28 H 0.018 0.982 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.153 0.847 36 H 0.158 0.842 37 H 0.162 0.838 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.212 -17.900 -7.644 19.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.242 4.242 3 Si 0.908 3.092 4 H -0.212 1.212 5 H -0.228 1.228 6 H -0.226 1.226 7 C -0.462 4.462 8 H 0.071 0.929 9 N -0.384 5.384 10 C 0.022 3.978 11 C 0.026 3.974 12 H 0.092 0.908 13 C -0.162 4.162 14 C -0.172 4.172 15 C -0.035 4.035 16 N -0.346 5.346 17 C 0.338 3.662 18 O -0.327 6.327 19 C -0.079 4.079 20 C -0.186 4.186 21 C -0.068 4.068 22 N -0.188 5.188 23 C -0.063 4.063 24 C -0.136 4.136 25 H 0.076 0.924 26 H 0.224 0.776 27 H 0.036 0.964 28 H 0.035 0.965 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.170 0.830 36 H 0.175 0.825 37 H 0.179 0.821 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.653 -15.662 -8.200 17.691 hybrid contribution 0.510 -1.559 0.739 1.799 sum -0.142 -17.221 -7.460 18.768 Atomic orbital electron populations 1.70713 1.05907 1.29278 1.52892 1.25565 0.97220 1.00376 1.01039 0.83318 0.74171 0.76200 0.75515 1.21186 1.22763 1.22591 1.19932 0.91367 0.86395 1.48477 0.92874 1.42820 1.06139 0.99727 1.89671 1.20899 0.93085 0.86240 0.97572 1.21961 0.97602 0.95850 0.81963 0.90840 1.22636 1.00678 0.93453 0.99458 1.22805 1.01817 0.97332 0.95208 1.22738 0.99936 0.84155 0.96695 1.48296 1.56263 1.16779 1.13227 1.17907 0.79521 0.83511 0.85280 1.90893 1.53666 1.23020 1.65142 1.20467 0.96504 0.96068 0.94857 1.23046 1.01620 0.98425 0.95479 1.22710 0.93078 0.97567 0.93403 1.67519 1.08693 1.05259 1.37288 1.22767 0.98524 0.94592 0.90382 1.22389 0.95776 0.98522 0.96941 0.92436 0.77569 0.96359 0.96450 0.90222 0.90002 0.90628 0.89885 0.89909 0.91198 0.82950 0.82487 0.82125 0.83337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -31.53 13.70 55.49 0.76 -30.77 16 2 C -0.04 -1.37 5.50 -17.43 -0.10 -1.47 16 3 Si 1.08 28.01 29.92 -169.99 -5.09 22.93 16 4 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 5 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 7 C -0.33 -10.20 9.99 -15.06 -0.15 -10.36 16 8 H 0.05 1.62 7.83 -52.49 -0.41 1.21 16 9 N -0.73 -20.30 4.11 -59.91 -0.25 -20.54 16 10 C 0.15 3.29 5.62 -4.04 -0.02 3.27 16 11 C 0.13 2.16 3.09 -66.95 -0.21 1.96 16 12 H 0.07 1.34 8.13 -51.92 -0.42 0.91 16 13 C -0.12 -1.40 6.45 -24.89 -0.16 -1.56 16 14 C -0.13 -1.18 7.09 -24.58 -0.17 -1.35 16 15 C 0.09 0.94 5.03 -2.53 -0.01 0.92 16 16 N -0.61 -9.75 3.06 -164.01 -0.50 -10.25 16 17 C 0.55 10.60 7.55 -12.19 -0.09 10.51 16 18 O -0.46 -11.32 12.37 5.35 0.07 -11.25 16 19 C -0.07 -1.07 5.81 -104.65 -0.61 -1.68 16 20 C -0.17 -2.03 8.13 -39.02 -0.32 -2.34 16 21 C 0.09 1.02 11.17 -17.59 -0.20 0.82 16 22 N -0.48 -6.31 10.33 -13.30 -0.14 -6.45 16 23 C 0.09 1.22 11.17 -17.59 -0.20 1.02 16 24 C -0.12 -1.75 9.69 -39.02 -0.38 -2.13 16 25 H 0.26 8.89 6.46 -40.82 -0.26 8.63 16 26 H 0.38 11.12 3.85 -40.82 -0.16 10.97 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.02 0.38 8.11 -51.92 -0.42 -0.04 16 29 H 0.08 0.87 7.85 -51.93 -0.41 0.47 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.76 5.77 -51.93 -0.30 0.46 16 34 H 0.07 0.68 7.51 -51.93 -0.39 0.29 16 35 H 0.15 1.50 4.22 -52.49 -0.22 1.28 16 36 H 0.16 1.24 8.06 -52.49 -0.42 0.81 16 37 H 0.16 1.62 8.06 -52.49 -0.42 1.19 16 38 H 0.15 2.36 7.89 -52.49 -0.41 1.94 16 LS Contribution 307.40 15.07 4.63 4.63 Total: -1.00 -38.57 307.40 -7.86 -46.44 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -4.74 Total: 7.66 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -2.61 Total: -2.39 kcal Atomic # 7 Polarization: -67.89 SS G_CDS: -0.13 Total: -68.02 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.07 Total: -11.25 kcal Atomic # 14 Polarization: 28.01 SS G_CDS: -5.09 Total: 22.93 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -38.57 -7.86 -46.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671262451.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.767 kcal (2) G-P(sol) polarization free energy of solvation -38.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds