Wall clock time and date at job start Mon Mar 30 2020 02:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00121 * 2 1 4 4 H 1.48504 * 109.47132 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47340 * 239.99884 * 3 2 1 6 6 H 1.48503 * 109.47251 * 119.99887 * 3 2 1 7 7 C 1.38811 * 119.99672 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00162 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00169 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00037 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47366 * 187.43282 * 10 9 7 12 12 H 1.09007 * 109.87583 * 313.07975 * 11 10 9 13 13 C 1.54323 * 109.88571 * 191.90194 * 11 10 9 14 14 C 1.55165 * 102.94038 * 218.39313 * 13 11 10 15 15 C 1.54904 * 101.58297 * 35.49960 * 14 13 11 16 16 N 1.47023 * 109.88016 * 74.09201 * 11 10 9 17 17 C 1.34774 * 125.64872 * 298.32653 * 16 11 10 18 18 O 1.21512 * 120.00017 * 4.49989 * 17 16 11 19 19 C 1.48149 * 120.00143 * 184.50358 * 17 16 11 20 20 C 1.39820 * 120.92145 * 338.03220 * 19 17 16 21 21 C 1.38152 * 119.00263 * 179.79776 * 20 19 17 22 22 N 1.31811 * 120.89514 * 0.49074 * 21 20 19 23 23 C 1.31814 * 122.04991 * 359.73619 * 22 21 20 24 24 C 1.38151 * 120.89548 * 0.02562 * 23 22 21 25 25 H 0.96999 * 120.00478 * 179.97438 * 1 2 3 26 26 H 0.96996 * 120.00129 * 359.97438 * 9 7 2 27 27 H 1.08995 * 109.47402 * 307.43910 * 10 9 7 28 28 H 1.09011 * 109.46635 * 67.44033 * 10 9 7 29 29 H 1.08999 * 110.71656 * 336.75165 * 13 11 10 30 30 H 1.08997 * 110.72230 * 100.03003 * 13 11 10 31 31 H 1.08997 * 111.00333 * 277.42551 * 14 13 11 32 32 H 1.09003 * 111.03439 * 153.58851 * 14 13 11 33 33 H 1.09000 * 110.36577 * 204.14906 * 15 14 13 34 34 H 1.09003 * 110.36773 * 81.82962 * 15 14 13 35 35 H 1.07998 * 120.49880 * 359.97438 * 20 19 17 36 36 H 1.08000 * 119.55073 * 180.22224 * 21 20 19 37 37 H 1.07995 * 119.55036 * 180.02562 * 23 22 21 38 38 H 1.07997 * 120.49821 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1040 1.6964 -1.2124 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 6 1.0741 -4.8136 -0.1880 12 1 0.2219 -4.6865 0.4798 13 6 1.7792 -6.1547 0.1048 14 6 1.1806 -7.1033 -0.9673 15 6 1.0197 -6.1462 -2.1745 16 7 0.6134 -4.8582 -1.5835 17 6 -0.0681 -3.8833 -2.2172 18 8 -0.2801 -2.8267 -1.6559 19 6 -0.5589 -4.1000 -3.5982 20 6 0.0248 -5.0647 -4.4250 21 6 -0.4671 -5.2364 -5.7046 22 7 -1.4649 -4.4997 -6.1506 23 6 -2.0403 -3.5767 -5.4060 24 6 -1.6148 -3.3417 -4.1128 25 1 -0.4851 -0.8400 -0.0004 26 1 0.3555 -2.3880 0.0002 27 1 2.7800 -3.6588 -0.8181 28 1 2.5818 -3.7747 0.9470 29 1 2.8574 -6.0595 -0.0234 30 1 1.5385 -6.5059 1.1082 31 1 0.2148 -7.4944 -0.6474 32 1 1.8702 -7.9145 -1.2009 33 1 0.2474 -6.5141 -2.8500 34 1 1.9672 -6.0391 -2.7027 35 1 0.8459 -5.6684 -4.0679 36 1 -0.0252 -5.9815 -6.3495 37 1 -2.8555 -2.9964 -5.8123 38 1 -2.0906 -2.5835 -3.5085 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671262451.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:39 Heat of formation + Delta-G solvation = 24.165072 kcal Electronic energy + Delta-G solvation = -21703.453338 eV Core-core repulsion = 18546.487103 eV Total energy + Delta-G solvation = -3156.966236 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.88871 -40.48747 -38.50753 -36.62640 -34.27439 -33.08134 -32.57394 -32.01238 -30.15776 -26.79867 -25.99292 -24.73595 -24.39398 -23.18831 -22.15063 -20.54149 -19.41279 -18.56449 -17.83030 -17.43630 -16.98015 -16.87132 -15.95541 -15.77430 -15.54595 -15.20330 -15.16040 -14.87537 -14.62188 -14.50241 -14.17106 -13.88131 -13.50795 -13.03335 -12.75677 -12.58360 -12.57292 -12.21525 -11.91966 -11.88845 -11.66041 -11.26826 -11.03424 -10.93879 -10.88841 -10.43591 -10.21398 -9.70080 -8.90787 -8.30984 -5.18543 -0.31026 0.05151 1.49931 1.62961 1.79167 1.84427 1.85099 2.72827 2.79054 3.28790 3.44509 3.47718 3.55265 3.63891 3.83576 3.89345 3.93970 4.01430 4.17859 4.26254 4.27079 4.46978 4.51614 4.67042 4.70148 4.75801 4.79399 4.80757 4.93874 5.02544 5.05973 5.11693 5.32845 5.43451 5.56900 5.58634 6.45948 6.62839 6.84530 7.05757 7.39226 8.23761 8.34805 9.22675 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014904 B = 0.006737 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.297913 B = 4155.277783 C = 5644.069499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.108 4.108 3 Si 1.128 2.872 4 H -0.291 1.291 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.337 4.337 8 H 0.053 0.947 9 N -0.746 5.746 10 C 0.148 3.852 11 C 0.129 3.871 12 H 0.049 0.951 13 C -0.114 4.114 14 C -0.118 4.118 15 C 0.075 3.925 16 N -0.607 5.607 17 C 0.539 3.461 18 O -0.531 6.531 19 C -0.091 4.091 20 C -0.153 4.153 21 C 0.100 3.900 22 N -0.488 5.488 23 C 0.099 3.901 24 C -0.140 4.140 25 H 0.247 0.753 26 H 0.374 0.626 27 H 0.010 0.990 28 H 0.023 0.977 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.123 0.877 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.182 0.818 36 H 0.203 0.797 37 H 0.185 0.815 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.592 -20.969 -9.242 22.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.300 4.300 3 Si 0.953 3.047 4 H -0.217 1.217 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.469 4.469 8 H 0.071 0.929 9 N -0.398 5.398 10 C 0.020 3.980 11 C 0.026 3.974 12 H 0.067 0.933 13 C -0.152 4.152 14 C -0.155 4.155 15 C -0.045 4.045 16 N -0.341 5.341 17 C 0.327 3.673 18 O -0.407 6.407 19 C -0.102 4.102 20 C -0.173 4.173 21 C -0.057 4.057 22 N -0.197 5.197 23 C -0.057 4.057 24 C -0.161 4.161 25 H 0.058 0.942 26 H 0.214 0.786 27 H 0.028 0.972 28 H 0.041 0.959 29 H 0.107 0.893 30 H 0.117 0.883 31 H 0.100 0.900 32 H 0.141 0.859 33 H 0.122 0.878 34 H 0.107 0.893 35 H 0.199 0.801 36 H 0.220 0.780 37 H 0.202 0.798 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.193 -18.842 -9.806 21.274 hybrid contribution -0.007 -0.742 1.203 1.413 sum 1.186 -19.584 -8.603 21.423 Atomic orbital electron populations 1.70828 1.07121 1.28338 1.55624 1.27194 0.97291 1.04483 1.01039 0.82652 0.73329 0.71774 0.76921 1.21706 1.21091 1.20006 1.20331 0.91570 0.88012 1.46950 0.92884 1.43084 1.06109 1.01011 1.89623 1.21110 0.93874 0.85968 0.97066 1.21938 0.95988 0.97020 0.82502 0.93316 1.22645 1.00642 0.90460 1.01492 1.22839 1.03006 0.97040 0.92631 1.23185 1.01368 0.81838 0.98146 1.48441 1.54652 1.18004 1.13030 1.18607 0.79022 0.83147 0.86494 1.90848 1.56738 1.26057 1.67008 1.20389 0.97736 0.98254 0.93803 1.23321 1.01614 0.97132 0.95195 1.23456 0.91736 0.97188 0.93291 1.67642 1.09399 1.05437 1.37247 1.23040 0.98816 0.94631 0.89205 1.22346 0.96772 0.98925 0.98027 0.94220 0.78578 0.97250 0.95933 0.89296 0.88339 0.89967 0.85872 0.87763 0.89275 0.80121 0.77993 0.79845 0.85852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -68.26 13.70 21.65 0.30 -67.97 16 2 C -0.11 -7.06 5.50 84.86 0.47 -6.60 16 3 Si 1.13 57.68 29.92 68.60 2.05 59.73 16 4 H -0.29 -14.99 7.11 99.48 0.71 -14.28 16 5 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 6 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 7 C -0.34 -21.54 9.99 84.03 0.84 -20.70 16 8 H 0.05 3.30 7.83 -2.91 -0.02 3.28 16 9 N -0.75 -43.59 4.11 -343.46 -1.41 -45.00 16 10 C 0.15 6.60 5.62 86.38 0.49 7.09 16 11 C 0.13 4.35 3.09 45.34 0.14 4.49 16 12 H 0.05 1.87 8.13 -2.38 -0.02 1.85 16 13 C -0.11 -2.26 6.45 31.79 0.21 -2.06 16 14 C -0.12 -1.52 7.09 31.99 0.23 -1.30 16 15 C 0.08 1.34 5.03 86.85 0.44 1.78 16 16 N -0.61 -19.30 3.06 -791.10 -2.42 -21.72 16 17 C 0.54 21.73 7.55 86.88 0.66 22.38 16 18 O -0.53 -28.54 12.37 -3.75 -0.05 -28.58 16 19 C -0.09 -2.91 5.81 -19.88 -0.12 -3.02 16 20 C -0.15 -3.33 8.13 22.63 0.18 -3.15 16 21 C 0.10 1.91 11.17 84.68 0.95 2.85 16 22 N -0.49 -11.70 10.33 -196.01 -2.03 -13.73 16 23 C 0.10 2.52 11.17 84.67 0.95 3.47 16 24 C -0.14 -4.47 9.69 22.63 0.22 -4.25 16 25 H 0.25 17.85 6.46 -92.71 -0.60 17.25 16 26 H 0.37 23.34 3.85 -92.71 -0.36 22.98 16 27 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.02 1.00 8.11 -2.38 -0.02 0.98 16 29 H 0.09 1.64 7.85 -2.39 -0.02 1.62 16 30 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.10 1.46 5.77 -2.39 -0.01 1.44 16 34 H 0.09 1.32 7.51 -2.39 -0.02 1.30 16 35 H 0.18 2.78 4.22 -2.91 -0.01 2.76 16 36 H 0.20 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.18 3.61 8.06 -2.91 -0.02 3.58 16 38 H 0.12 4.46 7.89 -2.91 -0.02 4.43 16 Total: -1.00 -91.34 307.40 2.97 -88.37 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: 0.89 Total: 27.93 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 5.64 Total: 0.98 kcal Atomic # 7 Polarization: -142.86 SS G_CDS: -5.56 Total: -148.42 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -0.05 Total: -28.58 kcal Atomic # 14 Polarization: 57.68 SS G_CDS: 2.05 Total: 59.73 kcal Total: -91.34 2.97 -88.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671262451.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.535 kcal (2) G-P(sol) polarization free energy of solvation -91.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds