Wall clock time and date at job start Mon Mar 30 2020 01:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99623 * 2 1 4 4 H 1.48499 * 109.46871 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47349 * 300.00067 * 3 2 1 6 6 H 1.48505 * 109.47162 * 60.00262 * 3 2 1 7 7 C 1.38808 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99330 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00410 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99940 * 180.02562 * 9 7 2 11 11 H 1.08991 * 109.47119 * 34.99718 * 10 9 7 12 12 C 1.53000 * 109.47054 * 155.00291 * 10 9 7 13 13 N 1.46499 * 109.46840 * 304.99499 * 12 10 9 14 14 C 1.34779 * 119.99872 * 180.02562 * 13 12 10 15 15 O 1.21553 * 119.99965 * 0.02562 * 14 13 12 16 16 C 1.47846 * 120.00003 * 180.02562 * 14 13 12 17 17 C 1.40017 * 120.55717 * 179.72743 * 16 14 13 18 18 C 1.38363 * 118.28432 * 179.73762 * 17 16 14 19 19 C 1.38346 * 119.30472 * 0.53298 * 18 17 16 20 20 N 1.31929 * 121.07992 * 359.72817 * 19 18 17 21 21 C 1.31692 * 121.87906 * 359.97438 * 20 19 18 22 22 C 1.53006 * 109.46878 * 274.99762 * 10 9 7 23 23 C 1.52995 * 117.49555 * 128.74822 * 22 10 9 24 24 C 1.52995 * 117.49792 * 60.09061 * 22 10 9 25 25 H 0.96994 * 120.00251 * 359.97438 * 1 2 3 26 26 H 0.96996 * 119.99970 * 0.02562 * 9 7 2 27 27 H 1.09002 * 109.47398 * 64.99825 * 12 10 9 28 28 H 1.09001 * 109.47194 * 185.00006 * 12 10 9 29 29 H 0.97000 * 120.00420 * 0.02562 * 13 12 10 30 30 H 1.07994 * 120.85826 * 359.96967 * 17 16 14 31 31 H 1.08007 * 120.34769 * 180.23397 * 18 17 16 32 32 H 1.08004 * 119.46155 * 179.74524 * 19 18 17 33 33 H 1.08000 * 119.72000 * 179.97438 * 21 20 19 34 34 H 1.08997 * 115.54853 * 274.41548 * 22 10 9 35 35 H 1.08998 * 117.49984 * 359.97438 * 23 22 10 36 36 H 1.09006 * 117.49830 * 145.02021 * 23 22 10 37 37 H 1.09000 * 117.49832 * 214.98051 * 24 22 10 38 38 H 1.09001 * 117.49910 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9689 -3.5504 0.5888 12 6 1.1811 -4.7521 0.6090 13 7 0.7345 -4.3355 1.9406 14 6 -0.0545 -5.1478 2.6716 15 8 -0.3951 -6.2262 2.2261 16 6 -0.5056 -4.7271 4.0152 17 6 -1.3301 -5.5593 4.7822 18 6 -1.7198 -5.1212 6.0354 19 6 -1.2958 -3.8823 6.4818 20 7 -0.5234 -3.1169 5.7347 21 6 -0.1213 -3.4919 4.5380 22 6 2.4221 -4.0355 -1.4376 23 6 3.8823 -4.3890 -1.7268 24 6 3.3029 -3.0621 -2.2233 25 1 -0.4850 0.8400 0.0004 26 1 0.3557 -2.3880 -0.0005 27 1 0.3135 -4.9201 -0.0291 28 1 1.7560 -5.6746 0.6908 29 1 1.0066 -3.4751 2.2963 30 1 -1.6504 -6.5199 4.4068 31 1 -2.3524 -5.7379 6.6567 32 1 -1.6019 -3.5360 7.4580 33 1 0.5104 -2.8374 3.9559 34 1 1.6542 -4.5774 -1.9897 35 1 4.5838 -4.3513 -0.8934 36 1 4.0751 -5.1632 -2.4696 37 1 3.1147 -2.9637 -3.2924 38 1 3.6228 -2.1516 -1.7166 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713860846.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:00 Heat of formation + Delta-G solvation = 36.292632 kcal Electronic energy + Delta-G solvation = -20719.152367 eV Core-core repulsion = 17562.712021 eV Total energy + Delta-G solvation = -3156.440345 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.49416 -38.88598 -37.52522 -34.76651 -33.48326 -32.53861 -31.79329 -30.67645 -28.05979 -24.82047 -23.70137 -23.34044 -22.21903 -21.71361 -20.44397 -19.62746 -18.11470 -17.22028 -16.73579 -16.38243 -15.29614 -15.21629 -14.94214 -14.83109 -14.39150 -14.00419 -13.70401 -13.43653 -13.19372 -13.17645 -12.87169 -12.25640 -12.12800 -11.41149 -11.20378 -10.90205 -10.89000 -10.74734 -10.13759 -10.10692 -9.98406 -9.96022 -9.59302 -9.40607 -9.32511 -9.28730 -9.01966 -8.70972 -7.08755 -5.84769 -3.14858 0.63840 1.15159 3.00085 3.37288 3.39894 3.44419 3.46825 3.87763 4.29161 4.38579 4.56983 4.70277 4.81154 4.86334 5.00513 5.17992 5.32453 5.43161 5.48375 5.54677 5.58593 5.70867 5.85602 5.93143 5.94900 6.02832 6.06578 6.14374 6.35021 6.48150 6.51580 6.55776 6.73203 6.81200 6.94722 7.62901 7.77833 7.83338 8.31664 8.41004 9.44299 9.97486 10.33597 11.36898 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014385 B = 0.005517 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.037394 B = 5073.798471 C = 6659.602084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.008 4.008 3 Si 0.902 3.098 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.072 0.928 9 N -0.717 5.717 10 C 0.192 3.808 11 H 0.056 0.944 12 C 0.119 3.881 13 N -0.704 5.704 14 C 0.559 3.441 15 O -0.549 6.549 16 C -0.182 4.182 17 C -0.020 4.020 18 C -0.185 4.185 19 C 0.116 3.884 20 N -0.486 5.486 21 C 0.141 3.859 22 C -0.159 4.159 23 C -0.196 4.196 24 C -0.156 4.156 25 H 0.255 0.745 26 H 0.385 0.615 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.410 0.590 30 H 0.145 0.855 31 H 0.140 0.860 32 H 0.159 0.841 33 H 0.165 0.835 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.503 -10.184 8.136 13.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.205 4.205 3 Si 0.734 3.266 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.370 4.370 8 H 0.090 0.910 9 N -0.358 5.358 10 C 0.081 3.919 11 H 0.074 0.926 12 C -0.006 4.006 13 N -0.355 5.355 14 C 0.345 3.655 15 O -0.429 6.429 16 C -0.187 4.187 17 C -0.047 4.047 18 C -0.205 4.205 19 C -0.041 4.041 20 N -0.194 5.194 21 C -0.017 4.017 22 C -0.181 4.181 23 C -0.234 4.234 24 C -0.193 4.193 25 H 0.065 0.935 26 H 0.220 0.780 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.248 0.752 30 H 0.163 0.837 31 H 0.158 0.842 32 H 0.176 0.824 33 H 0.182 0.818 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.657 -9.958 8.135 12.875 hybrid contribution -0.102 0.617 -0.406 0.746 sum 0.556 -9.341 7.729 12.136 Atomic orbital electron populations 1.69665 1.05063 1.25665 1.57110 1.24724 0.95429 0.97599 1.02713 0.86198 0.78823 0.84386 0.77232 1.20563 1.21922 1.21845 1.19192 0.90868 0.83772 1.43189 0.91029 1.42470 1.05827 0.99413 1.88120 1.20072 0.94344 0.86092 0.91361 0.92580 1.21656 0.98776 0.97710 0.82420 1.45905 1.50042 1.21613 1.17989 1.18003 0.78764 0.84385 0.84369 1.90739 1.57403 1.22514 1.72211 1.21093 1.03181 0.97641 0.96809 1.21719 0.91516 0.99023 0.92424 1.22133 1.02893 0.98415 0.97061 1.23011 0.91761 0.90332 0.98978 1.67748 1.11340 1.34454 1.05885 1.23189 0.94596 0.92576 0.91322 1.23017 0.92198 1.03144 0.99745 1.22964 0.97239 0.99833 1.03367 1.22782 1.03329 0.94059 0.99106 0.93478 0.78046 0.91515 0.91357 0.75225 0.83675 0.84233 0.82415 0.81802 0.89110 0.89528 0.90079 0.90214 0.87677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.42 13.06 55.49 0.72 -25.70 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 3 Si 0.90 21.32 29.55 -169.99 -5.02 16.30 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.24 -5.95 8.63 -15.06 -0.13 -6.08 16 8 H 0.07 1.75 6.91 -52.48 -0.36 1.38 16 9 N -0.72 -15.93 4.54 -53.42 -0.24 -16.18 16 10 C 0.19 3.44 2.70 -67.92 -0.18 3.26 16 11 H 0.06 1.02 7.84 -51.93 -0.41 0.61 16 12 C 0.12 1.96 5.21 -4.04 -0.02 1.94 16 13 N -0.70 -11.46 5.34 -61.25 -0.33 -11.79 16 14 C 0.56 9.29 7.78 -12.33 -0.10 9.19 16 15 O -0.55 -10.45 16.42 5.32 0.09 -10.36 16 16 C -0.18 -2.64 5.89 -104.82 -0.62 -3.26 16 17 C -0.02 -0.25 9.72 -38.87 -0.38 -0.63 16 18 C -0.19 -1.84 10.10 -39.50 -0.40 -2.24 16 19 C 0.12 1.27 11.17 -17.47 -0.20 1.07 16 20 N -0.49 -6.86 10.35 -12.91 -0.13 -6.99 16 21 C 0.14 2.04 10.71 -17.13 -0.18 1.86 16 22 C -0.16 -2.70 5.36 -90.62 -0.49 -3.18 16 23 C -0.20 -2.90 10.18 -26.70 -0.27 -3.17 16 24 C -0.16 -2.69 9.78 -26.70 -0.26 -2.96 16 25 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.39 9.44 7.80 -40.82 -0.32 9.12 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.41 6.67 6.20 -40.82 -0.25 6.41 16 30 H 0.15 1.67 7.74 -52.49 -0.41 1.26 16 31 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 32 H 0.16 1.20 8.06 -52.48 -0.42 0.77 16 33 H 0.16 2.31 6.42 -52.49 -0.34 1.98 16 34 H 0.09 1.51 8.11 -51.93 -0.42 1.09 16 35 H 0.09 1.23 8.05 -51.93 -0.42 0.81 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.10 2.04 6.23 -51.93 -0.32 1.72 16 LS Contribution 325.61 15.07 4.91 4.91 Total: -1.00 -29.98 325.61 -8.24 -38.22 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -4.92 Total: 16.09 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -3.32 Total: -4.51 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: 0.02 Total: -60.66 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.98 -8.24 -38.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713860846.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.517 kcal (2) G-P(sol) polarization free energy of solvation -29.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds