Wall clock time and date at job start Mon Mar 30 2020 01:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99623 * 2 1 4 4 H 1.48499 * 109.46871 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47349 * 300.00067 * 3 2 1 6 6 H 1.48505 * 109.47162 * 60.00262 * 3 2 1 7 7 C 1.38808 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99330 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00410 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99940 * 180.02562 * 9 7 2 11 11 H 1.08991 * 109.47119 * 34.99718 * 10 9 7 12 12 C 1.53000 * 109.47054 * 155.00291 * 10 9 7 13 13 N 1.46499 * 109.46840 * 304.99499 * 12 10 9 14 14 C 1.34779 * 119.99872 * 180.02562 * 13 12 10 15 15 O 1.21553 * 119.99965 * 0.02562 * 14 13 12 16 16 C 1.47846 * 120.00003 * 180.02562 * 14 13 12 17 17 C 1.40017 * 120.55717 * 179.72743 * 16 14 13 18 18 C 1.38363 * 118.28432 * 179.73762 * 17 16 14 19 19 C 1.38346 * 119.30472 * 0.53298 * 18 17 16 20 20 N 1.31929 * 121.07992 * 359.72817 * 19 18 17 21 21 C 1.31692 * 121.87906 * 359.97438 * 20 19 18 22 22 C 1.53006 * 109.46878 * 274.99762 * 10 9 7 23 23 C 1.52995 * 117.49555 * 128.74822 * 22 10 9 24 24 C 1.52995 * 117.49792 * 60.09061 * 22 10 9 25 25 H 0.96994 * 120.00251 * 359.97438 * 1 2 3 26 26 H 0.96996 * 119.99970 * 0.02562 * 9 7 2 27 27 H 1.09002 * 109.47398 * 64.99825 * 12 10 9 28 28 H 1.09001 * 109.47194 * 185.00006 * 12 10 9 29 29 H 0.97000 * 120.00420 * 0.02562 * 13 12 10 30 30 H 1.07994 * 120.85826 * 359.96967 * 17 16 14 31 31 H 1.08007 * 120.34769 * 180.23397 * 18 17 16 32 32 H 1.08004 * 119.46155 * 179.74524 * 19 18 17 33 33 H 1.08000 * 119.72000 * 179.97438 * 21 20 19 34 34 H 1.08997 * 115.54853 * 274.41548 * 22 10 9 35 35 H 1.08998 * 117.49984 * 359.97438 * 23 22 10 36 36 H 1.09006 * 117.49830 * 145.02021 * 23 22 10 37 37 H 1.09000 * 117.49832 * 214.98051 * 24 22 10 38 38 H 1.09001 * 117.49910 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9689 -3.5504 0.5888 12 6 1.1811 -4.7521 0.6090 13 7 0.7345 -4.3355 1.9406 14 6 -0.0545 -5.1478 2.6716 15 8 -0.3951 -6.2262 2.2261 16 6 -0.5056 -4.7271 4.0152 17 6 -1.3301 -5.5593 4.7822 18 6 -1.7198 -5.1212 6.0354 19 6 -1.2958 -3.8823 6.4818 20 7 -0.5234 -3.1169 5.7347 21 6 -0.1213 -3.4919 4.5380 22 6 2.4221 -4.0355 -1.4376 23 6 3.8823 -4.3890 -1.7268 24 6 3.3029 -3.0621 -2.2233 25 1 -0.4850 0.8400 0.0004 26 1 0.3557 -2.3880 -0.0005 27 1 0.3135 -4.9201 -0.0291 28 1 1.7560 -5.6746 0.6908 29 1 1.0066 -3.4751 2.2963 30 1 -1.6504 -6.5199 4.4068 31 1 -2.3524 -5.7379 6.6567 32 1 -1.6019 -3.5360 7.4580 33 1 0.5104 -2.8374 3.9559 34 1 1.6542 -4.5774 -1.9897 35 1 4.5838 -4.3513 -0.8934 36 1 4.0751 -5.1632 -2.4696 37 1 3.1147 -2.9637 -3.2924 38 1 3.6228 -2.1516 -1.7166 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713860846.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:59 Heat of formation + Delta-G solvation = 16.564388 kcal Electronic energy + Delta-G solvation = -20720.007847 eV Core-core repulsion = 17562.712021 eV Total energy + Delta-G solvation = -3157.295826 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.58937 -40.11631 -38.95073 -36.16333 -35.21762 -33.55716 -33.08047 -32.15471 -29.63513 -26.14354 -25.19364 -24.52261 -23.54285 -23.00533 -21.75237 -21.01957 -19.50382 -18.84690 -17.82475 -17.46147 -16.88406 -16.47254 -16.27217 -16.13183 -15.80263 -15.42799 -15.04226 -14.84175 -14.67279 -14.28387 -14.08996 -13.68364 -13.17446 -12.98939 -12.91498 -12.70140 -12.38824 -12.25214 -11.94941 -11.72749 -11.39154 -11.00313 -10.97631 -10.90367 -10.76643 -10.46435 -10.31743 -10.01027 -8.99556 -7.88382 -5.15880 -0.37428 0.20557 1.48995 1.51286 1.58680 1.80220 2.13296 2.58282 2.84906 3.08871 3.31864 3.49126 3.73128 3.78675 3.82946 3.93212 3.99891 4.03696 4.18717 4.35532 4.40073 4.45581 4.56427 4.64766 4.70179 4.84826 4.91686 5.01483 5.10608 5.14853 5.17383 5.41545 5.43261 5.50182 5.59711 5.63340 6.31249 6.46595 6.85553 7.09445 7.39907 8.10386 8.35723 9.34467 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014385 B = 0.005517 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.037394 B = 5073.798471 C = 6659.602084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.069 4.069 3 Si 0.957 3.043 4 H -0.266 1.266 5 H -0.302 1.302 6 H -0.299 1.299 7 C -0.216 4.216 8 H 0.078 0.922 9 N -0.724 5.724 10 C 0.196 3.804 11 H 0.059 0.941 12 C 0.127 3.873 13 N -0.704 5.704 14 C 0.559 3.441 15 O -0.578 6.578 16 C -0.200 4.200 17 C -0.028 4.028 18 C -0.166 4.166 19 C 0.116 3.884 20 N -0.513 5.513 21 C 0.130 3.870 22 C -0.173 4.173 23 C -0.162 4.162 24 C -0.174 4.174 25 H 0.247 0.753 26 H 0.372 0.628 27 H 0.055 0.945 28 H 0.085 0.915 29 H 0.410 0.590 30 H 0.152 0.848 31 H 0.183 0.817 32 H 0.196 0.804 33 H 0.155 0.845 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.142 -11.574 9.377 14.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.262 4.262 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.230 1.230 6 H -0.226 1.226 7 C -0.348 4.348 8 H 0.096 0.904 9 N -0.363 5.363 10 C 0.087 3.913 11 H 0.077 0.923 12 C 0.003 3.997 13 N -0.355 5.355 14 C 0.346 3.654 15 O -0.459 6.459 16 C -0.206 4.206 17 C -0.054 4.054 18 C -0.185 4.185 19 C -0.040 4.040 20 N -0.222 5.222 21 C -0.028 4.028 22 C -0.194 4.194 23 C -0.199 4.199 24 C -0.211 4.211 25 H 0.056 0.944 26 H 0.205 0.795 27 H 0.073 0.927 28 H 0.103 0.897 29 H 0.247 0.753 30 H 0.170 0.830 31 H 0.200 0.800 32 H 0.213 0.787 33 H 0.172 0.828 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.125 0.875 37 H 0.104 0.896 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.356 -11.378 9.372 14.803 hybrid contribution -0.292 0.941 -0.718 1.219 sum 1.065 -10.437 8.653 13.599 Atomic orbital electron populations 1.69807 1.06393 1.25476 1.60041 1.25343 0.96025 1.00352 1.04452 0.85300 0.78527 0.81150 0.76162 1.19033 1.23005 1.22650 1.19479 0.91157 0.84511 1.39633 0.90395 1.42573 1.05295 1.00387 1.88045 1.20177 0.94107 0.84666 0.92384 0.92267 1.21557 0.98185 0.97696 0.82302 1.45914 1.50090 1.21586 1.17896 1.18340 0.78102 0.83844 0.85065 1.90710 1.58526 1.23617 1.73082 1.20972 1.04973 0.98467 0.96144 1.21968 0.91094 0.99050 0.93290 1.22554 1.01745 0.98141 0.96065 1.23713 0.90169 0.90308 0.99804 1.67758 1.12703 1.35745 1.05981 1.23051 0.95239 0.92607 0.91896 1.22910 0.94010 1.03936 0.98567 1.23035 0.95106 0.98289 1.03486 1.22735 1.04793 0.94324 0.99288 0.94450 0.79549 0.92689 0.89734 0.75290 0.83034 0.79957 0.78739 0.82806 0.88743 0.88573 0.87520 0.89615 0.90084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.63 13.06 21.65 0.28 -56.35 16 2 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 3 Si 0.96 44.55 29.55 68.60 2.03 46.58 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 6 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 7 C -0.22 -10.79 8.63 84.03 0.73 -10.06 16 8 H 0.08 3.76 6.91 -2.91 -0.02 3.74 16 9 N -0.72 -32.52 4.54 -322.94 -1.47 -33.98 16 10 C 0.20 6.92 2.70 44.99 0.12 7.04 16 11 H 0.06 2.08 7.84 -2.39 -0.02 2.06 16 12 C 0.13 4.16 5.21 86.38 0.45 4.61 16 13 N -0.70 -23.32 5.34 -465.97 -2.49 -25.81 16 14 C 0.56 18.81 7.78 86.79 0.68 19.49 16 15 O -0.58 -22.09 16.42 -3.88 -0.06 -22.15 16 16 C -0.20 -5.80 5.89 -19.99 -0.12 -5.92 16 17 C -0.03 -0.64 9.72 22.73 0.22 -0.42 16 18 C -0.17 -2.76 10.10 22.33 0.23 -2.53 16 19 C 0.12 2.22 11.17 84.70 0.95 3.17 16 20 N -0.51 -14.02 10.35 -194.75 -2.01 -16.04 16 21 C 0.13 3.79 10.71 85.02 0.91 4.70 16 22 C -0.17 -5.63 5.36 -10.79 -0.06 -5.68 16 23 C -0.16 -4.31 10.18 30.61 0.31 -4.00 16 24 C -0.17 -5.82 9.78 30.61 0.30 -5.52 16 25 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 26 H 0.37 18.74 7.80 -92.71 -0.72 18.02 16 27 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.41 13.74 6.20 -92.71 -0.58 13.16 16 30 H 0.15 3.27 7.74 -2.91 -0.02 3.24 16 31 H 0.18 1.47 8.06 -2.91 -0.02 1.44 16 32 H 0.20 2.16 8.06 -2.91 -0.02 2.13 16 33 H 0.15 4.59 6.42 -2.91 -0.02 4.57 16 34 H 0.09 3.02 8.11 -2.39 -0.02 3.00 16 35 H 0.10 2.42 8.05 -2.39 -0.02 2.40 16 36 H 0.11 2.37 8.14 -2.38 -0.02 2.35 16 37 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 38 H 0.08 3.10 6.23 -2.39 -0.01 3.09 16 Total: -1.00 -65.54 325.61 1.25 -64.29 By element: Atomic # 1 Polarization: 42.06 SS G_CDS: -0.21 Total: 41.86 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 5.18 Total: 1.60 kcal Atomic # 7 Polarization: -126.49 SS G_CDS: -5.69 Total: -132.18 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.06 Total: -22.15 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -65.54 1.25 -64.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713860846.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.859 kcal (2) G-P(sol) polarization free energy of solvation -65.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds