Wall clock time and date at job start Mon Mar 30 2020 01:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 119.99854 * 2 1 4 4 H 1.48508 * 109.47412 * 270.00149 * 3 2 1 5 5 H 1.48505 * 109.47547 * 29.99901 * 3 2 1 6 6 H 1.48503 * 109.47136 * 150.00445 * 3 2 1 7 7 C 1.38806 * 120.00012 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00090 * 157.93626 * 7 2 1 9 9 N 1.36939 * 120.00134 * 337.93877 * 7 2 1 10 10 C 1.46502 * 119.99886 * 324.92351 * 9 7 2 11 11 C 1.52997 * 109.47402 * 270.00403 * 10 9 7 12 12 N 1.46493 * 109.47451 * 179.97438 * 11 10 9 13 13 C 1.34775 * 120.00307 * 179.97438 * 12 11 10 14 14 O 1.21513 * 120.00067 * 0.02562 * 13 12 11 15 15 C 1.48173 * 120.00098 * 179.97438 * 13 12 11 16 16 C 1.39310 * 119.72066 * 180.02562 * 15 13 12 17 17 C 1.38587 * 119.05749 * 180.02562 * 16 15 13 18 18 C 1.38622 * 118.48956 * 0.02562 * 17 16 15 19 19 C 1.38561 * 119.34965 * 0.25330 * 18 17 16 20 20 N 1.31521 * 120.90477 * 359.49497 * 19 18 17 21 21 C 1.46503 * 120.00270 * 144.92330 * 9 7 2 22 22 C 1.52999 * 117.49509 * 3.23954 * 21 9 7 23 23 C 1.52995 * 117.49596 * 294.57788 * 21 9 7 24 24 H 0.97006 * 120.00143 * 356.06694 * 1 2 3 25 25 H 1.09005 * 109.47227 * 150.00052 * 10 9 7 26 26 H 1.09004 * 109.46962 * 29.99993 * 10 9 7 27 27 H 1.08997 * 109.47159 * 59.99316 * 11 10 9 28 28 H 1.09004 * 109.46727 * 299.99734 * 11 10 9 29 29 H 0.96996 * 119.99945 * 0.02562 * 12 11 10 30 30 H 1.08001 * 120.46926 * 0.02609 * 16 15 13 31 31 H 1.08004 * 120.75266 * 179.97438 * 17 16 15 32 32 H 1.08004 * 120.32467 * 179.97438 * 18 17 16 33 33 H 1.08002 * 119.54770 * 179.74831 * 19 18 17 34 34 H 1.09002 * 115.54898 * 148.90424 * 21 9 7 35 35 H 1.08996 * 117.50368 * 359.97438 * 22 21 9 36 36 H 1.09007 * 117.49675 * 145.02091 * 22 21 9 37 37 H 1.09000 * 117.49423 * 214.96980 * 23 21 9 38 38 H 1.08999 * 117.50474 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0309 -1.2365 -0.3508 9 7 1.4008 -2.3444 0.4465 10 6 0.4456 -2.2800 1.5554 11 6 1.1887 -2.4650 2.8800 12 7 0.2337 -2.3999 3.9890 13 6 0.6645 -2.5385 5.2584 14 8 1.8453 -2.7170 5.4832 15 6 -0.3014 -2.4721 6.3801 16 6 0.1505 -2.6156 7.6900 17 6 -0.7649 -2.5518 8.7286 18 6 -2.1010 -2.3471 8.4208 19 6 -2.4803 -2.2187 7.0943 20 7 -1.5899 -2.2785 6.1282 21 6 1.7038 -3.6310 -0.1854 22 6 2.7654 -3.6442 -1.2871 23 6 1.2872 -3.8162 -1.6458 24 1 -0.4850 0.8381 0.0576 25 1 -0.2968 -3.0700 1.4419 26 1 -0.0520 -1.3102 1.5504 27 1 1.9311 -1.6751 2.9935 28 1 1.6863 -3.4348 2.8850 29 1 -0.7089 -2.2578 3.8095 30 1 1.1992 -2.7743 7.8933 31 1 -0.4447 -2.6599 9.7544 32 1 -2.8396 -2.2929 9.2069 33 1 -3.5209 -2.0632 6.8506 34 1 1.6465 -4.5010 0.4687 35 1 3.2380 -2.6957 -1.5421 36 1 3.4061 -4.5232 -1.3581 37 1 0.9562 -4.8084 -1.9527 38 1 0.7873 -2.9811 -2.1364 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714661630.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:43 Heat of formation + Delta-G solvation = 50.679518 kcal Electronic energy + Delta-G solvation = -20501.548392 eV Core-core repulsion = 17345.731909 eV Total energy + Delta-G solvation = -3155.816483 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.54131 -38.68284 -37.07921 -34.78561 -33.31210 -32.64452 -31.56999 -30.67281 -27.73217 -24.94811 -24.00371 -23.54180 -21.75568 -21.26633 -20.45409 -19.74427 -18.05001 -16.79948 -16.22937 -16.02583 -15.52854 -15.18637 -15.02414 -14.84621 -14.46508 -14.03244 -13.63617 -13.60454 -13.22244 -12.65767 -12.58929 -12.11299 -11.91267 -11.55200 -11.03329 -10.72855 -10.70902 -10.32338 -10.17607 -10.15751 -10.09282 -9.83538 -9.62999 -9.52515 -9.35350 -9.27489 -8.54863 -8.45171 -6.62833 -5.83780 -3.43963 0.56682 1.04697 2.89570 3.33030 3.41393 3.42989 3.47301 3.86867 4.14091 4.44040 4.59955 4.76840 4.80674 4.90569 4.93731 5.25734 5.30512 5.36731 5.55236 5.79487 5.90679 5.91288 6.05344 6.12225 6.21845 6.30033 6.40627 6.50441 6.53749 6.62846 6.85438 6.99507 7.07203 7.22358 7.53473 7.60408 7.77684 7.98106 8.42331 8.52314 9.09708 9.72732 10.27572 11.12750 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019226 B = 0.004304 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.986278 B = 6503.998773 C = 7139.347326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.012 3.988 3 Si 0.896 3.104 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.260 4.260 8 H 0.068 0.932 9 N -0.547 5.547 10 C 0.136 3.864 11 C 0.097 3.903 12 N -0.696 5.696 13 C 0.560 3.440 14 O -0.542 6.542 15 C 0.087 3.913 16 C -0.116 4.116 17 C -0.084 4.084 18 C -0.158 4.158 19 C 0.097 3.903 20 N -0.457 5.457 21 C 0.119 3.881 22 C -0.195 4.195 23 C -0.220 4.220 24 H 0.255 0.745 25 H 0.033 0.967 26 H 0.107 0.893 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.409 0.591 30 H 0.148 0.852 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.162 0.838 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.303 -5.514 14.338 16.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.188 4.188 3 Si 0.725 3.275 4 H -0.212 1.212 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.389 4.389 8 H 0.086 0.914 9 N -0.264 5.264 10 C 0.009 3.991 11 C -0.028 4.028 12 N -0.345 5.345 13 C 0.344 3.656 14 O -0.419 6.419 15 C -0.051 4.051 16 C -0.137 4.137 17 C -0.110 4.110 18 C -0.178 4.178 19 C -0.062 4.062 20 N -0.169 5.169 21 C 0.010 3.990 22 C -0.233 4.233 23 C -0.261 4.261 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.124 0.876 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.244 0.756 30 H 0.166 0.834 31 H 0.158 0.842 32 H 0.156 0.844 33 H 0.179 0.821 34 H 0.105 0.895 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.806 -5.382 13.507 15.314 hybrid contribution 0.152 0.867 0.805 1.193 sum -4.654 -4.515 14.313 15.713 Atomic orbital electron populations 1.70031 1.05513 1.26148 1.50792 1.25119 0.95005 0.98799 0.99909 0.86420 0.79708 0.83550 0.77869 1.21162 1.21418 1.20169 1.19080 0.94552 0.85439 1.39855 0.91432 1.43229 1.49222 1.01690 1.32240 1.21103 0.90950 1.03779 0.83265 1.22411 0.92737 1.01184 0.86503 1.45966 1.13012 1.70101 1.05437 1.17901 0.86944 0.77969 0.82823 1.90766 1.16390 1.50325 1.84457 1.21400 0.90957 0.99089 0.93683 1.22165 1.02027 0.97358 0.92133 1.21620 0.93028 0.96481 0.99827 1.22358 0.97020 1.00024 0.98385 1.22838 0.99305 0.95584 0.88482 1.67607 1.01618 1.10090 1.37573 1.21238 1.00601 0.89950 0.87202 1.23041 0.91917 1.01929 1.06433 1.23357 0.97400 1.00665 1.04657 0.93468 0.94873 0.87571 0.91324 0.92887 0.75600 0.83443 0.84227 0.84385 0.82055 0.89464 0.88424 0.90699 0.91191 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.54 11.33 55.49 0.63 -23.91 16 2 C 0.01 0.32 4.96 -17.43 -0.09 0.24 16 3 Si 0.90 21.39 29.61 -169.99 -5.03 16.36 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.26 -6.91 8.63 -15.06 -0.13 -7.04 16 8 H 0.07 1.80 6.55 -52.49 -0.34 1.46 16 9 N -0.55 -13.32 2.78 -165.66 -0.46 -13.78 16 10 C 0.14 3.07 5.45 -4.04 -0.02 3.04 16 11 C 0.10 2.00 6.00 -4.05 -0.02 1.98 16 12 N -0.70 -12.67 5.54 -61.15 -0.34 -13.01 16 13 C 0.56 10.16 7.81 -12.18 -0.10 10.07 16 14 O -0.54 -11.27 16.32 5.35 0.09 -11.18 16 15 C 0.09 1.30 6.75 -83.01 -0.56 0.74 16 16 C -0.12 -1.41 9.63 -39.05 -0.38 -1.79 16 17 C -0.08 -0.74 10.17 -39.31 -0.40 -1.14 16 18 C -0.16 -1.27 10.11 -39.32 -0.40 -1.67 16 19 C 0.10 0.97 11.18 -17.57 -0.20 0.78 16 20 N -0.46 -6.24 9.54 -9.80 -0.09 -6.33 16 21 C 0.12 2.54 6.56 -67.93 -0.45 2.10 16 22 C -0.19 -3.86 9.80 -26.69 -0.26 -4.12 16 23 C -0.22 -4.47 10.36 -26.69 -0.28 -4.75 16 24 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 25 H 0.03 0.70 8.07 -51.93 -0.42 0.28 16 26 H 0.11 2.68 5.36 -51.93 -0.28 2.41 16 27 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 28 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.41 6.89 7.80 -40.82 -0.32 6.57 16 30 H 0.15 1.74 7.64 -52.49 -0.40 1.34 16 31 H 0.14 0.80 8.06 -52.48 -0.42 0.37 16 32 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 33 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.09 1.70 8.14 -51.93 -0.42 1.27 16 35 H 0.10 2.10 6.37 -51.93 -0.33 1.77 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 327.00 15.07 4.93 4.93 Total: -1.00 -30.85 327.00 -8.59 -39.43 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -5.03 Total: 9.06 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -3.27 Total: -1.56 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -0.26 Total: -57.03 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.85 -8.59 -39.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714661630.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.111 kcal (2) G-P(sol) polarization free energy of solvation -30.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds