Wall clock time and date at job start Mon Mar 30 2020 01:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99739 * 2 1 4 4 H 1.48499 * 109.47061 * 274.98700 * 3 2 1 5 5 H 1.48493 * 109.47356 * 34.98967 * 3 2 1 6 6 H 1.48505 * 109.47145 * 154.99179 * 3 2 1 7 7 C 1.38809 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00224 * 185.02487 * 7 2 1 9 9 N 1.36939 * 119.99781 * 4.74301 * 7 2 1 10 10 C 1.47062 * 136.05895 * 353.85837 * 9 7 2 11 11 C 1.53500 * 87.98400 * 207.07940 * 10 9 7 12 12 C 1.47070 * 136.05447 * 173.47758 * 9 7 2 13 13 H 1.09002 * 113.46911 * 267.70190 * 12 9 7 14 14 C 1.53001 * 113.46860 * 38.14055 * 12 9 7 15 15 N 1.46499 * 109.46837 * 285.49347 * 14 12 9 16 16 C 1.34779 * 119.99715 * 179.97438 * 15 14 12 17 17 O 1.21280 * 120.00273 * 359.97438 * 16 15 14 18 18 C 1.50701 * 120.00129 * 179.97438 * 16 15 14 19 19 C 1.50697 * 109.47281 * 179.97438 * 18 16 15 20 20 C 1.38667 * 120.42297 * 269.72312 * 19 18 16 21 21 C 1.38630 * 118.42246 * 179.78322 * 20 19 18 22 22 C 1.38234 * 119.15928 * 0.47068 * 21 20 19 23 23 N 1.31852 * 120.76000 * 359.76951 * 22 21 20 24 24 C 1.31884 * 121.73045 * 0.02562 * 23 22 21 25 25 H 0.96999 * 120.00086 * 359.97438 * 1 2 3 26 26 H 1.09003 * 113.46384 * 321.85758 * 10 9 7 27 27 H 1.08997 * 113.47177 * 92.23837 * 10 9 7 28 28 H 1.08996 * 114.20859 * 87.51734 * 11 10 9 29 29 H 1.09006 * 114.20309 * 220.14552 * 11 10 9 30 30 H 1.08999 * 109.47099 * 45.48849 * 14 12 9 31 31 H 1.08996 * 109.47216 * 165.49574 * 14 12 9 32 32 H 0.96997 * 120.00535 * 0.02562 * 15 14 12 33 33 H 1.09003 * 109.47119 * 300.00521 * 18 16 15 34 34 H 1.09006 * 109.46735 * 60.00176 * 18 16 15 35 35 H 1.08007 * 120.79110 * 0.02562 * 20 19 18 36 36 H 1.07995 * 120.42205 * 180.22071 * 21 20 19 37 37 H 1.07998 * 119.61572 * 179.78826 * 22 21 20 38 38 H 1.08000 * 119.61771 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5043 2.6200 0.8028 6 1 3.5965 1.4121 0.5919 7 6 2.0103 -1.2021 -0.0005 8 1 3.0872 -1.2039 0.0814 9 7 1.3291 -2.3859 -0.0991 10 6 -0.0826 -2.7978 -0.1083 11 6 0.3656 -4.1539 0.4542 12 6 1.6874 -3.8044 -0.2492 13 1 1.7272 -4.1346 -1.2872 14 6 2.9294 -4.2069 0.5485 15 7 4.1264 -3.6850 -0.1155 16 6 5.3449 -3.9172 0.4118 17 8 5.4502 -4.5577 1.4363 18 6 6.5763 -3.3809 -0.2714 19 6 7.7996 -3.7761 0.5150 20 6 8.2882 -2.9500 1.5158 21 6 9.4134 -3.3564 2.2162 22 6 10.0124 -4.5585 1.8893 23 7 9.5229 -5.3165 0.9279 24 6 8.4521 -4.9636 0.2437 25 1 -0.4850 0.8400 0.0004 26 1 -0.7057 -2.2268 0.5801 27 1 -0.5097 -2.8616 -1.1091 28 1 0.4295 -4.1875 1.5417 29 1 -0.1568 -5.0097 0.0266 30 1 2.8637 -3.7949 1.5555 31 1 2.9893 -5.2938 0.6038 32 1 4.0422 -3.1718 -0.9342 33 1 6.6421 -3.7936 -1.2782 34 1 6.5164 -2.2939 -0.3275 35 1 7.8013 -2.0139 1.7468 36 1 9.8192 -2.7397 3.0044 37 1 10.8914 -4.8806 2.4279 38 1 8.0801 -5.6109 -0.5367 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716649677.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:07 Heat of formation + Delta-G solvation = 52.622432 kcal Electronic energy + Delta-G solvation = -20598.949289 eV Core-core repulsion = 17443.217057 eV Total energy + Delta-G solvation = -3155.732232 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.40232 -39.21191 -38.06565 -34.09237 -33.57069 -32.27706 -31.96620 -28.92581 -28.00611 -26.80618 -23.62502 -23.52199 -22.81503 -21.70350 -20.18792 -19.25546 -17.30150 -17.04621 -16.52828 -16.36834 -15.95961 -15.34230 -14.88945 -14.63930 -14.19336 -13.91088 -13.56124 -13.44732 -13.15692 -13.09413 -12.96320 -12.34877 -11.81377 -11.67038 -11.53223 -11.14099 -11.02353 -10.83903 -10.60790 -10.06949 -9.91861 -9.89607 -9.68325 -9.53557 -9.27873 -8.96543 -8.87704 -8.59904 -6.94531 -5.84349 -3.16254 1.03401 1.24160 2.89484 3.32116 3.36362 3.40173 3.45854 3.86896 4.34182 4.37586 4.61134 4.72962 4.92856 4.94415 5.04657 5.18674 5.25657 5.35309 5.39887 5.51642 5.58552 5.68585 5.72646 5.87469 6.03949 6.07129 6.19317 6.28109 6.36805 6.55744 6.62608 6.68324 6.85515 7.18444 7.33581 7.52321 7.85367 7.90146 7.90784 8.52055 8.96217 9.63728 10.57873 11.33404 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019808 B = 0.004437 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.211066 B = 6309.033611 C = 7419.935290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.217 4.217 8 H 0.081 0.919 9 N -0.601 5.601 10 C 0.154 3.846 11 C -0.162 4.162 12 C 0.127 3.873 13 H 0.048 0.952 14 C 0.122 3.878 15 N -0.713 5.713 16 C 0.511 3.489 17 O -0.546 6.546 18 C -0.102 4.102 19 C -0.109 4.109 20 C -0.062 4.062 21 C -0.171 4.171 22 C 0.091 3.909 23 N -0.486 5.486 24 C 0.111 3.889 25 H 0.254 0.746 26 H 0.068 0.932 27 H 0.027 0.973 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.404 0.596 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.153 0.847 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.032 -7.187 -0.889 14.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.203 4.203 3 Si 0.737 3.263 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.344 4.344 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.028 3.972 11 C -0.201 4.201 12 C 0.019 3.981 13 H 0.066 0.934 14 C -0.002 4.002 15 N -0.363 5.363 16 C 0.296 3.704 17 O -0.424 6.424 18 C -0.143 4.143 19 C -0.111 4.111 20 C -0.088 4.088 21 C -0.191 4.191 22 C -0.066 4.066 23 N -0.195 5.195 24 C -0.046 4.046 25 H 0.064 0.936 26 H 0.086 0.914 27 H 0.044 0.956 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.239 0.761 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.170 0.830 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 13.538 -8.060 -0.312 15.759 hybrid contribution -0.137 2.147 -0.291 2.171 sum 13.401 -5.913 -0.603 14.660 Atomic orbital electron populations 1.69845 1.05043 1.25369 1.55919 1.24820 0.95635 0.97461 1.02366 0.86186 0.78745 0.83863 0.77498 1.21597 1.21679 1.20646 1.18850 0.90509 0.81420 1.43627 0.90149 1.45685 1.02598 0.99927 1.84523 1.21972 0.88588 0.89172 0.97444 1.23716 0.97062 0.98939 1.00362 1.22467 0.91873 0.87616 0.96156 0.93432 1.21787 0.83552 0.97329 0.97572 1.45971 1.05756 1.55579 1.29022 1.20354 0.84516 0.80379 0.85128 1.90699 1.86816 1.40662 1.24219 1.20637 0.90374 1.03595 0.99702 1.20326 0.96623 0.96306 0.97839 1.21502 0.94704 0.99419 0.93194 1.22102 0.97295 0.98512 1.01212 1.22713 0.98912 0.91031 0.93944 1.67659 1.12018 1.33094 1.06694 1.22572 0.91021 0.93465 0.97583 0.93624 0.91390 0.95568 0.90242 0.92336 0.91230 0.92317 0.76142 0.87682 0.87560 0.84863 0.84854 0.82976 0.83070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.38 11.62 55.49 0.64 -25.74 16 2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 3 Si 0.91 21.28 29.56 -169.99 -5.02 16.26 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.22 -5.63 10.55 -15.06 -0.16 -5.79 16 8 H 0.08 1.99 7.61 -52.49 -0.40 1.59 16 9 N -0.60 -14.24 3.65 -176.84 -0.64 -14.89 16 10 C 0.15 3.45 7.31 -8.51 -0.06 3.39 16 11 C -0.16 -2.88 8.04 -26.08 -0.21 -3.09 16 12 C 0.13 2.36 4.11 -72.26 -0.30 2.06 16 13 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 14 C 0.12 2.15 5.53 -4.04 -0.02 2.12 16 15 N -0.71 -11.35 5.33 -60.30 -0.32 -11.67 16 16 C 0.51 8.03 7.82 -10.98 -0.09 7.95 16 17 O -0.55 -10.68 16.03 5.56 0.09 -10.59 16 18 C -0.10 -1.18 5.86 -29.04 -0.17 -1.35 16 19 C -0.11 -1.37 4.39 -104.48 -0.46 -1.83 16 20 C -0.06 -0.75 9.86 -39.28 -0.39 -1.14 16 21 C -0.17 -1.84 10.11 -39.44 -0.40 -2.24 16 22 C 0.09 1.03 11.18 -17.54 -0.20 0.83 16 23 N -0.49 -6.51 10.36 -13.25 -0.14 -6.65 16 24 C 0.11 1.41 10.86 -17.55 -0.19 1.22 16 25 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.07 1.71 7.31 -51.93 -0.38 1.33 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.08 1.41 8.13 -51.93 -0.42 0.99 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.40 6.00 8.47 -40.82 -0.35 5.66 16 33 H 0.10 0.91 8.09 -51.93 -0.42 0.49 16 34 H 0.11 1.10 8.09 -51.93 -0.42 0.68 16 35 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 36 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 327.95 15.07 4.94 4.94 Total: -1.00 -33.04 327.95 -8.51 -41.55 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -5.33 Total: 4.89 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -2.73 Total: 1.89 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: -0.46 Total: -58.95 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.04 -8.51 -41.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716649677.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.172 kcal (2) G-P(sol) polarization free energy of solvation -33.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds