Wall clock time and date at job start Mon Mar 30 2020 01:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99739 * 2 1 4 4 H 1.48499 * 109.47061 * 274.98700 * 3 2 1 5 5 H 1.48493 * 109.47356 * 34.98967 * 3 2 1 6 6 H 1.48505 * 109.47145 * 154.99179 * 3 2 1 7 7 C 1.38809 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00224 * 185.02487 * 7 2 1 9 9 N 1.36939 * 119.99781 * 4.74301 * 7 2 1 10 10 C 1.47062 * 136.05895 * 353.85837 * 9 7 2 11 11 C 1.53500 * 87.98400 * 207.07940 * 10 9 7 12 12 C 1.47070 * 136.05447 * 173.47758 * 9 7 2 13 13 H 1.09002 * 113.46911 * 267.70190 * 12 9 7 14 14 C 1.53001 * 113.46860 * 38.14055 * 12 9 7 15 15 N 1.46499 * 109.46837 * 285.49347 * 14 12 9 16 16 C 1.34779 * 119.99715 * 179.97438 * 15 14 12 17 17 O 1.21280 * 120.00273 * 359.97438 * 16 15 14 18 18 C 1.50701 * 120.00129 * 179.97438 * 16 15 14 19 19 C 1.50697 * 109.47281 * 179.97438 * 18 16 15 20 20 C 1.38667 * 120.42297 * 269.72312 * 19 18 16 21 21 C 1.38630 * 118.42246 * 179.78322 * 20 19 18 22 22 C 1.38234 * 119.15928 * 0.47068 * 21 20 19 23 23 N 1.31852 * 120.76000 * 359.76951 * 22 21 20 24 24 C 1.31884 * 121.73045 * 0.02562 * 23 22 21 25 25 H 0.96999 * 120.00086 * 359.97438 * 1 2 3 26 26 H 1.09003 * 113.46384 * 321.85758 * 10 9 7 27 27 H 1.08997 * 113.47177 * 92.23837 * 10 9 7 28 28 H 1.08996 * 114.20859 * 87.51734 * 11 10 9 29 29 H 1.09006 * 114.20309 * 220.14552 * 11 10 9 30 30 H 1.08999 * 109.47099 * 45.48849 * 14 12 9 31 31 H 1.08996 * 109.47216 * 165.49574 * 14 12 9 32 32 H 0.96997 * 120.00535 * 0.02562 * 15 14 12 33 33 H 1.09003 * 109.47119 * 300.00521 * 18 16 15 34 34 H 1.09006 * 109.46735 * 60.00176 * 18 16 15 35 35 H 1.08007 * 120.79110 * 0.02562 * 20 19 18 36 36 H 1.07995 * 120.42205 * 180.22071 * 21 20 19 37 37 H 1.07998 * 119.61572 * 179.78826 * 22 21 20 38 38 H 1.08000 * 119.61771 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5043 2.6200 0.8028 6 1 3.5965 1.4121 0.5919 7 6 2.0103 -1.2021 -0.0005 8 1 3.0872 -1.2039 0.0814 9 7 1.3291 -2.3859 -0.0991 10 6 -0.0826 -2.7978 -0.1083 11 6 0.3656 -4.1539 0.4542 12 6 1.6874 -3.8044 -0.2492 13 1 1.7272 -4.1346 -1.2872 14 6 2.9294 -4.2069 0.5485 15 7 4.1264 -3.6850 -0.1155 16 6 5.3449 -3.9172 0.4118 17 8 5.4502 -4.5577 1.4363 18 6 6.5763 -3.3809 -0.2714 19 6 7.7996 -3.7761 0.5150 20 6 8.2882 -2.9500 1.5158 21 6 9.4134 -3.3564 2.2162 22 6 10.0124 -4.5585 1.8893 23 7 9.5229 -5.3165 0.9279 24 6 8.4521 -4.9636 0.2437 25 1 -0.4850 0.8400 0.0004 26 1 -0.7057 -2.2268 0.5801 27 1 -0.5097 -2.8616 -1.1091 28 1 0.4295 -4.1875 1.5417 29 1 -0.1568 -5.0097 0.0266 30 1 2.8637 -3.7949 1.5555 31 1 2.9893 -5.2938 0.6038 32 1 4.0422 -3.1718 -0.9342 33 1 6.6421 -3.7936 -1.2782 34 1 6.5164 -2.2939 -0.3275 35 1 7.8013 -2.0139 1.7468 36 1 9.8192 -2.7397 3.0044 37 1 10.8914 -4.8806 2.4279 38 1 8.0801 -5.6109 -0.5367 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716649677.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:06 Heat of formation + Delta-G solvation = 30.136836 kcal Electronic energy + Delta-G solvation = -20599.924338 eV Core-core repulsion = 17443.217057 eV Total energy + Delta-G solvation = -3156.707281 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.38149 -40.48621 -39.60341 -35.47194 -34.53769 -34.21565 -32.83291 -30.19621 -29.80625 -28.02746 -25.37951 -24.50263 -24.02066 -22.99196 -21.47779 -20.89164 -18.76805 -18.05661 -17.78929 -17.45383 -17.17231 -17.05403 -16.14386 -15.84990 -15.67207 -15.42043 -14.85897 -14.72805 -14.32935 -14.15563 -13.95257 -13.72232 -13.41718 -13.03959 -12.92148 -12.67405 -12.57340 -12.45200 -12.29782 -11.84767 -11.63352 -11.24059 -10.90736 -10.83669 -10.64323 -10.41575 -9.97784 -9.88976 -8.86853 -7.87120 -5.18266 0.16223 0.35535 1.46379 1.47297 1.55440 1.68308 2.28833 2.49418 2.92730 3.35007 3.47264 3.50892 3.73644 3.90030 3.92641 4.03744 4.09340 4.11836 4.21216 4.36012 4.48487 4.57407 4.65356 4.70471 4.76550 4.87217 4.91586 5.06111 5.12085 5.18696 5.32678 5.35084 5.50270 5.59907 5.74311 5.79005 5.97250 6.62109 6.94551 7.02519 7.29555 7.65816 8.66248 9.31449 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019808 B = 0.004437 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.211066 B = 6309.033611 C = 7419.935290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.072 4.072 3 Si 0.968 3.032 4 H -0.287 1.287 5 H -0.303 1.303 6 H -0.266 1.266 7 C -0.208 4.208 8 H 0.091 0.909 9 N -0.629 5.629 10 C 0.145 3.855 11 C -0.137 4.137 12 C 0.134 3.866 13 H 0.071 0.929 14 C 0.132 3.868 15 N -0.711 5.711 16 C 0.510 3.490 17 O -0.587 6.587 18 C -0.093 4.093 19 C -0.122 4.122 20 C -0.080 4.080 21 C -0.171 4.171 22 C 0.082 3.918 23 N -0.512 5.512 24 C 0.095 3.905 25 H 0.245 0.755 26 H 0.030 0.970 27 H 0.023 0.977 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.411 0.589 33 H 0.137 0.863 34 H 0.122 0.878 35 H 0.141 0.859 36 H 0.161 0.839 37 H 0.180 0.820 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.851 -7.899 -1.409 16.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.264 4.264 3 Si 0.798 3.202 4 H -0.214 1.214 5 H -0.231 1.231 6 H -0.190 1.190 7 C -0.336 4.336 8 H 0.109 0.891 9 N -0.355 5.355 10 C 0.020 3.980 11 C -0.176 4.176 12 C 0.028 3.972 13 H 0.088 0.912 14 C 0.006 3.994 15 N -0.362 5.362 16 C 0.298 3.702 17 O -0.468 6.468 18 C -0.133 4.133 19 C -0.124 4.124 20 C -0.106 4.106 21 C -0.190 4.190 22 C -0.075 4.075 23 N -0.221 5.221 24 C -0.061 4.061 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.040 0.960 28 H 0.096 0.904 29 H 0.116 0.884 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.247 0.753 33 H 0.155 0.845 34 H 0.140 0.860 35 H 0.159 0.841 36 H 0.179 0.821 37 H 0.197 0.803 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 15.388 -8.799 -0.857 17.747 hybrid contribution -0.672 2.279 -0.089 2.378 sum 14.716 -6.519 -0.946 16.123 Atomic orbital electron populations 1.70034 1.06516 1.25242 1.58608 1.25594 0.96390 1.00690 1.03757 0.85199 0.77981 0.79868 0.77199 1.21362 1.23079 1.19015 1.19254 0.91146 0.82378 1.40830 0.89100 1.46002 1.03512 1.01340 1.84637 1.21979 0.87850 0.91502 0.96714 1.23544 0.96159 0.97577 1.00287 1.22591 0.92749 0.84494 0.97354 0.91218 1.21533 0.83929 0.98110 0.95790 1.45956 1.05532 1.55581 1.29125 1.21034 0.85293 0.79355 0.84507 1.90681 1.87391 1.42579 1.26163 1.20653 0.87653 1.04413 1.00556 1.20470 0.97054 0.96525 0.98397 1.21808 0.95406 0.99921 0.93427 1.22436 0.96672 0.98561 1.01371 1.23239 0.99623 0.91074 0.93530 1.67677 1.12653 1.34074 1.07679 1.22853 0.91206 0.93914 0.98140 0.94643 0.95128 0.95951 0.90402 0.88350 0.94334 0.90617 0.75346 0.84508 0.86018 0.84108 0.82130 0.80327 0.81845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.53 11.62 21.65 0.25 -56.28 16 2 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 3 Si 0.97 44.00 29.56 68.60 2.03 46.03 16 4 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 5 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.21 -10.69 10.55 84.03 0.89 -9.81 16 8 H 0.09 4.36 7.61 -2.91 -0.02 4.34 16 9 N -0.63 -29.41 3.65 -713.39 -2.60 -32.02 16 10 C 0.15 6.52 7.31 83.18 0.61 7.13 16 11 C -0.14 -4.60 8.04 31.02 0.25 -4.35 16 12 C 0.13 4.72 4.11 41.88 0.17 4.89 16 13 H 0.07 2.24 8.14 -2.39 -0.02 2.23 16 14 C 0.13 4.38 5.53 86.38 0.48 4.86 16 15 N -0.71 -21.16 5.33 -463.06 -2.47 -23.63 16 16 C 0.51 15.12 7.82 87.66 0.69 15.81 16 17 O -0.59 -22.41 16.03 -3.03 -0.05 -22.46 16 18 C -0.09 -1.91 5.86 29.10 0.17 -1.74 16 19 C -0.12 -2.86 4.39 -19.78 -0.09 -2.95 16 20 C -0.08 -1.79 9.86 22.47 0.22 -1.56 16 21 C -0.17 -3.32 10.11 22.36 0.23 -3.10 16 22 C 0.08 1.70 11.18 84.69 0.95 2.65 16 23 N -0.51 -13.06 10.36 -195.84 -2.03 -15.09 16 24 C 0.10 2.31 10.86 84.67 0.92 3.23 16 25 H 0.24 14.25 8.31 -92.71 -0.77 13.48 16 26 H 0.03 1.58 7.31 -2.39 -0.02 1.56 16 27 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.08 2.66 8.13 -2.39 -0.02 2.64 16 29 H 0.10 2.57 8.14 -2.38 -0.02 2.55 16 30 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.41 11.14 8.47 -92.71 -0.79 10.36 16 33 H 0.14 1.92 8.09 -2.39 -0.02 1.90 16 34 H 0.12 2.15 8.09 -2.38 -0.02 2.13 16 35 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 36 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 37 H 0.18 2.52 8.06 -2.91 -0.02 2.50 16 38 H 0.16 3.28 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -72.77 327.95 1.35 -71.41 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.28 Total: 20.42 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 5.94 Total: 11.61 kcal Atomic # 7 Polarization: -120.16 SS G_CDS: -6.85 Total: -127.01 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.05 Total: -22.46 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -72.77 1.35 -71.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716649677.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.550 kcal (2) G-P(sol) polarization free energy of solvation -72.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds