Wall clock time and date at job start Mon Mar 30 2020 01:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99625 * 2 1 4 4 H 1.48507 * 109.46903 * 239.99316 * 3 2 1 5 5 H 1.48490 * 109.47451 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46886 * 119.99786 * 3 2 1 7 7 C 1.38807 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00002 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99972 * 0.02562 * 7 2 1 10 10 C 1.47575 * 134.49366 * 359.97438 * 9 7 2 11 11 C 1.53948 * 86.11782 * 155.36164 * 10 9 7 12 12 C 1.47577 * 134.48972 * 179.97438 * 9 7 2 13 13 H 1.09004 * 113.87089 * 90.32578 * 12 9 7 14 14 C 1.52996 * 113.77470 * 318.94100 * 12 9 7 15 15 N 1.46499 * 109.47258 * 78.50154 * 14 12 9 16 16 C 1.34780 * 120.00466 * 180.02562 * 15 14 12 17 17 O 1.21283 * 119.99468 * 0.02562 * 16 15 14 18 18 C 1.50699 * 120.00056 * 180.02562 * 16 15 14 19 19 C 1.50696 * 109.46907 * 180.02562 * 18 16 15 20 20 C 1.38678 * 120.41768 * 269.97769 * 19 18 16 21 21 C 1.38627 * 118.42399 * 180.02562 * 20 19 18 22 22 C 1.38220 * 119.16050 * 0.02562 * 21 20 19 23 23 N 1.31860 * 120.76284 * 359.97438 * 22 21 20 24 24 C 1.31884 * 121.72590 * 0.02562 * 23 22 21 25 25 H 0.97000 * 119.99765 * 0.02562 * 1 2 3 26 26 H 1.09002 * 113.77194 * 41.05929 * 10 9 7 27 27 H 1.09003 * 113.76767 * 269.65775 * 10 9 7 28 28 H 1.08998 * 113.73399 * 269.26027 * 11 10 9 29 29 H 1.08996 * 113.83753 * 137.96566 * 11 10 9 30 30 H 1.09005 * 109.46897 * 318.50893 * 14 12 9 31 31 H 1.08997 * 109.47877 * 198.51001 * 14 12 9 32 32 H 0.97005 * 120.00241 * 0.02562 * 15 14 12 33 33 H 1.08996 * 109.47316 * 60.00012 * 18 16 15 34 34 H 1.09001 * 109.47269 * 299.99921 * 18 16 15 35 35 H 1.07999 * 120.78603 * 0.03631 * 20 19 18 36 36 H 1.07999 * 120.41874 * 179.97438 * 21 20 19 37 37 H 1.07999 * 119.62072 * 180.02562 * 22 21 20 38 38 H 1.08003 * 119.61187 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1032 -2.7574 0.0005 11 6 0.3471 -4.0830 -0.6398 12 6 1.7202 -3.8101 0.0005 13 1 1.8327 -4.2366 0.9973 14 6 2.9025 -4.1221 -0.9191 15 7 4.1497 -3.7188 -0.2650 16 6 5.3288 -3.8988 -0.8927 17 8 5.3571 -4.3943 -1.9993 18 6 6.6118 -3.4844 -0.2195 19 6 7.7762 -3.7905 -1.1259 20 6 8.4136 -5.0202 -1.0591 21 6 9.4806 -5.2576 -1.9117 22 6 9.8712 -4.2675 -2.7935 23 7 9.2415 -3.1095 -2.8294 24 6 8.2228 -2.8490 -2.0333 25 1 -0.4850 0.8401 -0.0004 26 1 -0.7168 -2.1391 -0.6547 27 1 -0.5270 -2.8731 0.9981 28 1 0.3591 -4.0620 -1.7295 29 1 -0.1583 -4.9607 -0.2371 30 1 2.7894 -3.5743 -1.8547 31 1 2.9299 -5.1920 -1.1255 32 1 4.1271 -3.3221 0.6199 33 1 6.7250 -4.0327 0.7157 34 1 6.5844 -2.4146 -0.0125 35 1 8.0865 -5.7752 -0.3595 36 1 10.0006 -6.2038 -1.8867 37 1 10.7012 -4.4445 -3.4614 38 1 7.7315 -1.8890 -2.0920 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716649678.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:10 Heat of formation + Delta-G solvation = 49.840051 kcal Electronic energy + Delta-G solvation = -20578.074441 eV Core-core repulsion = 17422.221556 eV Total energy + Delta-G solvation = -3155.852885 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.40775 -39.18328 -37.90484 -34.10383 -33.58172 -32.21207 -31.97164 -28.93716 -27.92737 -26.84556 -23.63476 -23.39378 -22.87921 -21.80441 -20.20677 -19.11047 -17.30647 -17.05459 -16.53460 -16.36356 -15.97546 -15.30920 -14.90053 -14.64028 -14.19880 -13.87934 -13.56949 -13.41467 -13.21927 -13.12955 -12.96702 -12.30943 -11.86161 -11.57626 -11.43764 -11.13393 -11.03532 -10.75485 -10.58904 -10.07072 -9.92646 -9.79590 -9.69307 -9.52703 -9.40632 -8.97803 -8.82184 -8.62318 -6.92425 -5.78960 -3.11768 1.03225 1.22717 2.88470 3.35983 3.40530 3.42550 3.45129 3.86337 4.34523 4.40725 4.62396 4.69478 4.88955 4.93762 5.01808 5.16123 5.24767 5.34755 5.37949 5.58630 5.61583 5.68470 5.71955 5.88817 6.00190 6.05707 6.16704 6.28978 6.37870 6.59421 6.62628 6.68485 6.85116 7.21602 7.38294 7.56293 7.83781 7.91889 7.95722 8.50895 9.01252 9.68464 10.56704 11.37680 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019847 B = 0.004418 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.444929 B = 6336.238577 C = 7443.450638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.907 3.093 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.221 4.221 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.159 3.841 11 C -0.156 4.156 12 C 0.126 3.874 13 H 0.049 0.951 14 C 0.124 3.876 15 N -0.714 5.714 16 C 0.511 3.489 17 O -0.545 6.545 18 C -0.102 4.102 19 C -0.109 4.109 20 C -0.063 4.063 21 C -0.174 4.174 22 C 0.091 3.909 23 N -0.485 5.485 24 C 0.114 3.886 25 H 0.254 0.746 26 H 0.074 0.926 27 H 0.026 0.974 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.403 0.597 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.153 0.847 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.430 -10.739 1.337 17.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.738 3.262 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.349 4.349 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.034 3.966 11 C -0.195 4.195 12 C 0.018 3.982 13 H 0.066 0.934 14 C -0.001 4.001 15 N -0.364 5.364 16 C 0.296 3.704 17 O -0.423 6.423 18 C -0.143 4.143 19 C -0.112 4.112 20 C -0.090 4.090 21 C -0.194 4.194 22 C -0.065 4.065 23 N -0.193 5.193 24 C -0.043 4.043 25 H 0.064 0.936 26 H 0.092 0.908 27 H 0.044 0.956 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.237 0.763 33 H 0.121 0.879 34 H 0.126 0.874 35 H 0.149 0.851 36 H 0.151 0.849 37 H 0.170 0.830 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 13.722 -10.084 -0.064 17.029 hybrid contribution 0.098 0.495 1.207 1.309 sum 13.820 -9.588 1.143 16.860 Atomic orbital electron populations 1.69808 1.04990 1.25408 1.56443 1.24761 0.95617 0.97425 1.02502 0.86280 0.78590 0.83488 0.77878 1.21100 1.21552 1.21230 1.18880 0.90090 0.81923 1.43961 0.90435 1.46059 1.02286 0.98537 1.85978 1.22198 0.87950 0.89607 0.96882 1.23775 0.96178 0.98972 1.00590 1.22499 0.92367 0.87697 0.95605 0.93354 1.21756 0.82337 0.98623 0.97381 1.45970 1.06035 1.63009 1.21363 1.20355 0.84954 0.78910 0.86165 1.90703 1.87421 1.44412 1.19750 1.20633 0.90513 1.04595 0.98529 1.20327 0.96872 0.95400 0.98579 1.21426 0.94097 0.95759 0.97669 1.22075 0.98620 1.00881 0.97789 1.22733 0.98282 0.88959 0.96569 1.67691 1.07904 1.21508 1.22197 1.22659 0.92253 0.99223 0.90199 0.93614 0.90820 0.95583 0.90530 0.92822 0.90998 0.92288 0.76277 0.87859 0.87395 0.85071 0.84925 0.82985 0.82857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.67 11.38 55.49 0.63 -26.04 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 3 Si 0.91 21.65 29.55 -169.99 -5.02 16.62 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.22 -5.80 10.51 -15.06 -0.16 -5.96 16 8 H 0.08 1.93 7.80 -52.49 -0.41 1.52 16 9 N -0.60 -14.35 3.57 -170.76 -0.61 -14.96 16 10 C 0.16 3.59 7.51 -2.98 -0.02 3.57 16 11 C -0.16 -2.80 7.86 -25.80 -0.20 -3.01 16 12 C 0.13 2.35 4.33 -66.87 -0.29 2.06 16 13 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 14 C 0.12 2.17 5.54 -4.04 -0.02 2.15 16 15 N -0.71 -11.23 5.53 -60.30 -0.33 -11.56 16 16 C 0.51 7.97 7.82 -10.98 -0.09 7.88 16 17 O -0.55 -10.63 16.03 5.56 0.09 -10.55 16 18 C -0.10 -1.16 5.86 -29.04 -0.17 -1.33 16 19 C -0.11 -1.37 4.39 -104.48 -0.46 -1.83 16 20 C -0.06 -0.70 9.86 -39.28 -0.39 -1.09 16 21 C -0.17 -1.76 10.11 -39.44 -0.40 -2.15 16 22 C 0.09 1.03 11.18 -17.55 -0.20 0.84 16 23 N -0.48 -6.78 10.36 -13.25 -0.14 -6.92 16 24 C 0.11 1.55 10.86 -17.55 -0.19 1.36 16 25 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.07 1.86 7.15 -51.93 -0.37 1.49 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.40 5.82 8.47 -40.82 -0.35 5.48 16 33 H 0.10 0.88 8.10 -51.93 -0.42 0.46 16 34 H 0.11 1.09 8.09 -51.93 -0.42 0.67 16 35 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.15 1.93 8.06 -52.48 -0.42 1.51 16 LS Contribution 328.06 15.07 4.94 4.94 Total: -1.00 -33.42 328.06 -8.45 -41.87 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -5.33 Total: 4.38 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -2.68 Total: 2.22 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: -0.45 Total: -59.49 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.42 -8.45 -41.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716649678.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.708 kcal (2) G-P(sol) polarization free energy of solvation -33.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds