Wall clock time and date at job start Mon Mar 30 2020 01:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99625 * 2 1 4 4 H 1.48507 * 109.46903 * 239.99316 * 3 2 1 5 5 H 1.48490 * 109.47451 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46886 * 119.99786 * 3 2 1 7 7 C 1.38807 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00002 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99972 * 0.02562 * 7 2 1 10 10 C 1.47575 * 134.49366 * 359.97438 * 9 7 2 11 11 C 1.53948 * 86.11782 * 155.36164 * 10 9 7 12 12 C 1.47577 * 134.48972 * 179.97438 * 9 7 2 13 13 H 1.09004 * 113.87089 * 90.32578 * 12 9 7 14 14 C 1.52996 * 113.77470 * 318.94100 * 12 9 7 15 15 N 1.46499 * 109.47258 * 78.50154 * 14 12 9 16 16 C 1.34780 * 120.00466 * 180.02562 * 15 14 12 17 17 O 1.21283 * 119.99468 * 0.02562 * 16 15 14 18 18 C 1.50699 * 120.00056 * 180.02562 * 16 15 14 19 19 C 1.50696 * 109.46907 * 180.02562 * 18 16 15 20 20 C 1.38678 * 120.41768 * 269.97769 * 19 18 16 21 21 C 1.38627 * 118.42399 * 180.02562 * 20 19 18 22 22 C 1.38220 * 119.16050 * 0.02562 * 21 20 19 23 23 N 1.31860 * 120.76284 * 359.97438 * 22 21 20 24 24 C 1.31884 * 121.72590 * 0.02562 * 23 22 21 25 25 H 0.97000 * 119.99765 * 0.02562 * 1 2 3 26 26 H 1.09002 * 113.77194 * 41.05929 * 10 9 7 27 27 H 1.09003 * 113.76767 * 269.65775 * 10 9 7 28 28 H 1.08998 * 113.73399 * 269.26027 * 11 10 9 29 29 H 1.08996 * 113.83753 * 137.96566 * 11 10 9 30 30 H 1.09005 * 109.46897 * 318.50893 * 14 12 9 31 31 H 1.08997 * 109.47877 * 198.51001 * 14 12 9 32 32 H 0.97005 * 120.00241 * 0.02562 * 15 14 12 33 33 H 1.08996 * 109.47316 * 60.00012 * 18 16 15 34 34 H 1.09001 * 109.47269 * 299.99921 * 18 16 15 35 35 H 1.07999 * 120.78603 * 0.03631 * 20 19 18 36 36 H 1.07999 * 120.41874 * 179.97438 * 21 20 19 37 37 H 1.07999 * 119.62072 * 180.02562 * 22 21 20 38 38 H 1.08003 * 119.61187 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1032 -2.7574 0.0005 11 6 0.3471 -4.0830 -0.6398 12 6 1.7202 -3.8101 0.0005 13 1 1.8327 -4.2366 0.9973 14 6 2.9025 -4.1221 -0.9191 15 7 4.1497 -3.7188 -0.2650 16 6 5.3288 -3.8988 -0.8927 17 8 5.3571 -4.3943 -1.9993 18 6 6.6118 -3.4844 -0.2195 19 6 7.7762 -3.7905 -1.1259 20 6 8.4136 -5.0202 -1.0591 21 6 9.4806 -5.2576 -1.9117 22 6 9.8712 -4.2675 -2.7935 23 7 9.2415 -3.1095 -2.8294 24 6 8.2228 -2.8490 -2.0333 25 1 -0.4850 0.8401 -0.0004 26 1 -0.7168 -2.1391 -0.6547 27 1 -0.5270 -2.8731 0.9981 28 1 0.3591 -4.0620 -1.7295 29 1 -0.1583 -4.9607 -0.2371 30 1 2.7894 -3.5743 -1.8547 31 1 2.9299 -5.1920 -1.1255 32 1 4.1271 -3.3221 0.6199 33 1 6.7250 -4.0327 0.7157 34 1 6.5844 -2.4146 -0.0125 35 1 8.0865 -5.7752 -0.3595 36 1 10.0006 -6.2038 -1.8867 37 1 10.7012 -4.4445 -3.4614 38 1 7.7315 -1.8890 -2.0920 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716649678.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:10 Heat of formation + Delta-G solvation = 26.801831 kcal Electronic energy + Delta-G solvation = -20579.073453 eV Core-core repulsion = 17422.221556 eV Total energy + Delta-G solvation = -3156.851897 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.37683 -40.42811 -39.47689 -35.48456 -34.54066 -34.16699 -32.82173 -30.19601 -29.76214 -28.06310 -25.27323 -24.50261 -24.12133 -23.04300 -21.47571 -20.76013 -18.78094 -18.05462 -17.78240 -17.46046 -17.18425 -17.02262 -16.13865 -15.89770 -15.61593 -15.43781 -14.88044 -14.74954 -14.34951 -14.16666 -13.92762 -13.68591 -13.32972 -13.00850 -12.89853 -12.66448 -12.59202 -12.45339 -12.30878 -11.82958 -11.52250 -11.36747 -10.96799 -10.80049 -10.64637 -10.40407 -9.98573 -9.89758 -8.86345 -7.84504 -5.16089 0.16277 0.37562 1.45537 1.48429 1.53345 1.68294 2.28449 2.49959 2.92600 3.35862 3.41446 3.50582 3.73368 3.92912 3.94385 4.06125 4.10903 4.13006 4.20041 4.37278 4.49899 4.57211 4.65562 4.72895 4.78545 4.86605 4.91233 5.06932 5.12768 5.19208 5.31871 5.35902 5.49574 5.63378 5.76919 5.80396 6.00290 6.62001 6.97400 7.03740 7.29829 7.68290 8.62787 9.32388 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019847 B = 0.004418 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.444929 B = 6336.238577 C = 7443.450638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.072 4.072 3 Si 0.966 3.034 4 H -0.285 1.285 5 H -0.301 1.301 6 H -0.272 1.272 7 C -0.213 4.213 8 H 0.089 0.911 9 N -0.629 5.629 10 C 0.149 3.851 11 C -0.133 4.133 12 C 0.134 3.866 13 H 0.075 0.925 14 C 0.133 3.867 15 N -0.711 5.711 16 C 0.510 3.490 17 O -0.588 6.588 18 C -0.092 4.092 19 C -0.122 4.122 20 C -0.071 4.071 21 C -0.168 4.168 22 C 0.078 3.922 23 N -0.517 5.517 24 C 0.086 3.914 25 H 0.244 0.756 26 H 0.036 0.964 27 H 0.023 0.977 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.036 0.964 31 H 0.078 0.922 32 H 0.411 0.589 33 H 0.140 0.860 34 H 0.120 0.880 35 H 0.156 0.844 36 H 0.168 0.832 37 H 0.178 0.822 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.343 -12.823 2.467 20.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.264 4.264 3 Si 0.795 3.205 4 H -0.211 1.211 5 H -0.227 1.227 6 H -0.197 1.197 7 C -0.341 4.341 8 H 0.106 0.894 9 N -0.356 5.356 10 C 0.024 3.976 11 C -0.172 4.172 12 C 0.028 3.972 13 H 0.092 0.908 14 C 0.008 3.992 15 N -0.362 5.362 16 C 0.298 3.702 17 O -0.468 6.468 18 C -0.132 4.132 19 C -0.124 4.124 20 C -0.097 4.097 21 C -0.188 4.188 22 C -0.078 4.078 23 N -0.226 5.226 24 C -0.070 4.070 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.041 0.959 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.055 0.945 31 H 0.096 0.904 32 H 0.247 0.753 33 H 0.158 0.842 34 H 0.139 0.861 35 H 0.174 0.826 36 H 0.185 0.815 37 H 0.195 0.805 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 15.664 -12.193 1.096 19.881 hybrid contribution -0.447 1.022 0.821 1.385 sum 15.217 -11.171 1.916 18.974 Atomic orbital electron populations 1.70000 1.06350 1.25181 1.59060 1.25514 0.96372 1.00539 1.04004 0.85333 0.77240 0.79752 0.78147 1.21129 1.22715 1.19727 1.19301 0.90821 0.82986 1.41009 0.89370 1.46409 1.03194 1.00035 1.85956 1.22162 0.87237 0.91775 0.96429 1.23573 0.95447 0.97834 1.00310 1.22665 0.93122 0.84520 0.96859 0.90796 1.21487 0.82949 0.99155 0.95606 1.45943 1.05648 1.62982 1.21619 1.21050 0.85916 0.77669 0.85571 1.90685 1.88052 1.46375 1.21716 1.20653 0.87549 1.05825 0.99187 1.20465 0.97386 0.95905 0.98671 1.21836 0.94051 0.95635 0.98141 1.22479 0.98068 1.01766 0.96447 1.23277 0.98721 0.88532 0.97286 1.67653 1.08688 1.23216 1.23053 1.22761 0.93045 0.99870 0.91318 0.94690 0.94529 0.95918 0.90708 0.88781 0.94549 0.90398 0.75327 0.84234 0.86145 0.82610 0.81494 0.80476 0.83360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.12 11.38 21.65 0.25 -56.87 16 2 C -0.07 -3.99 5.50 84.86 0.47 -3.53 16 3 Si 0.97 45.08 29.55 68.60 2.03 47.11 16 4 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 5 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.21 -11.10 10.51 84.03 0.88 -10.22 16 8 H 0.09 4.29 7.80 -2.91 -0.02 4.26 16 9 N -0.63 -29.66 3.57 -694.15 -2.48 -32.14 16 10 C 0.15 6.76 7.51 86.48 0.65 7.41 16 11 C -0.13 -4.50 7.86 31.25 0.25 -4.26 16 12 C 0.13 4.70 4.33 45.09 0.20 4.89 16 13 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 14 C 0.13 4.44 5.54 86.38 0.48 4.92 16 15 N -0.71 -20.84 5.53 -463.06 -2.56 -23.40 16 16 C 0.51 14.99 7.82 87.66 0.69 15.67 16 17 O -0.59 -22.41 16.03 -3.04 -0.05 -22.46 16 18 C -0.09 -1.86 5.86 29.10 0.17 -1.69 16 19 C -0.12 -2.84 4.39 -19.78 -0.09 -2.92 16 20 C -0.07 -1.37 9.86 22.47 0.22 -1.14 16 21 C -0.17 -2.92 10.11 22.36 0.23 -2.69 16 22 C 0.08 1.64 11.18 84.68 0.95 2.59 16 23 N -0.52 -14.29 10.36 -195.85 -2.03 -16.32 16 24 C 0.09 2.34 10.86 84.67 0.92 3.26 16 25 H 0.24 14.40 8.31 -92.71 -0.77 13.63 16 26 H 0.04 1.91 7.15 -2.39 -0.02 1.89 16 27 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.07 2.57 8.10 -2.39 -0.02 2.55 16 29 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.41 10.74 8.47 -92.70 -0.79 9.96 16 33 H 0.14 1.78 8.10 -2.39 -0.02 1.77 16 34 H 0.12 2.14 8.09 -2.39 -0.02 2.12 16 35 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 36 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 37 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16 38 H 0.15 3.87 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -74.67 328.06 1.43 -73.24 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.28 Total: 18.55 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 6.00 Total: 12.30 kcal Atomic # 7 Polarization: -121.91 SS G_CDS: -6.82 Total: -128.73 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.05 Total: -22.46 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -74.67 1.43 -73.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716649678.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.043 kcal (2) G-P(sol) polarization free energy of solvation -74.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds