Wall clock time and date at job start Mon Mar 30 2020 01:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99531 * 2 1 4 4 H 1.48501 * 109.47037 * 270.00610 * 3 2 1 5 5 H 1.48501 * 109.47161 * 30.00210 * 3 2 1 6 6 H 1.48496 * 109.47132 * 150.00084 * 3 2 1 7 7 C 1.38812 * 120.00432 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99731 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99756 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99852 * 185.77363 * 9 7 2 11 11 C 1.52997 * 112.91001 * 292.60309 * 10 9 7 12 12 N 1.46498 * 109.47054 * 311.32291 * 11 10 9 13 13 C 1.34775 * 119.99864 * 175.67839 * 12 11 10 14 14 O 1.21513 * 120.00134 * 0.02562 * 13 12 11 15 15 C 1.48171 * 119.99996 * 179.97438 * 13 12 11 16 16 C 1.39312 * 119.72237 * 179.97438 * 15 13 12 17 17 C 1.38592 * 119.05373 * 179.97438 * 16 15 13 18 18 C 1.38619 * 118.49273 * 359.97438 * 17 16 15 19 19 C 1.38561 * 119.35371 * 0.02562 * 18 17 16 20 20 N 1.31526 * 120.89785 * 359.73730 * 19 18 17 21 21 C 1.53785 * 113.60874 * 63.85293 * 10 9 7 22 22 C 1.53789 * 87.07833 * 89.11527 * 21 10 9 23 23 C 1.53778 * 87.08034 * 25.43326 * 22 21 10 24 24 H 0.96999 * 120.00558 * 359.97438 * 1 2 3 25 25 H 0.96996 * 119.99958 * 5.78216 * 9 7 2 26 26 H 1.09000 * 109.46869 * 71.32020 * 11 10 9 27 27 H 1.09003 * 109.47086 * 191.32029 * 11 10 9 28 28 H 0.96996 * 119.99980 * 355.67109 * 12 11 10 29 29 H 1.07990 * 120.46964 * 359.95833 * 16 15 13 30 30 H 1.08004 * 120.75393 * 180.02562 * 17 16 15 31 31 H 1.08008 * 120.32474 * 180.02562 * 18 17 16 32 32 H 1.08001 * 119.55106 * 179.97438 * 19 18 17 33 33 H 1.08994 * 113.61738 * 334.56854 * 21 10 9 34 34 H 1.09004 * 113.60796 * 203.66053 * 21 10 9 35 35 H 1.09006 * 113.60869 * 139.97985 * 22 21 10 36 36 H 1.08998 * 113.61124 * 270.87976 * 22 21 10 37 37 H 1.08999 * 113.61882 * 89.11380 * 23 22 21 38 38 H 1.09006 * 113.60882 * 219.93864 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4974 2.0466 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4404 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0528 -3.6536 0.1265 11 6 2.9291 -3.9617 -1.0892 12 7 2.1456 -3.7823 -2.3140 13 6 2.7371 -3.9145 -3.5177 14 8 3.9202 -4.1828 -3.5872 15 6 1.9445 -3.7337 -4.7565 16 6 2.5619 -3.8711 -5.9978 17 6 1.8073 -3.6996 -7.1475 18 6 0.4610 -3.3971 -7.0158 19 6 -0.0871 -3.2753 -5.7491 20 7 0.6511 -3.4478 -4.6743 21 6 2.7851 -3.8109 1.4696 22 6 1.4904 -4.4388 2.0123 23 6 1.1662 -4.8324 0.5615 24 1 -0.4851 0.8400 0.0004 25 1 0.3594 -2.3902 -0.0848 26 1 3.7834 -3.2849 -1.1021 27 1 3.2821 -4.9913 -1.0311 28 1 1.2011 -3.5686 -2.2585 29 1 3.6136 -4.1077 -6.0631 30 1 2.2578 -3.8002 -8.1239 31 1 -0.1549 -3.2576 -7.8921 32 1 -1.1356 -3.0392 -5.6428 33 1 3.0413 -2.8622 1.9411 34 1 3.6242 -4.5056 1.4305 35 1 1.6608 -5.2923 2.6686 36 1 0.7957 -3.7119 2.4332 37 1 1.5627 -5.8062 0.2742 38 1 0.1151 -4.7094 0.3003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717146048.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:11 Heat of formation + Delta-G solvation = 34.669486 kcal Electronic energy + Delta-G solvation = -21113.021758 eV Core-core repulsion = 17956.511028 eV Total energy + Delta-G solvation = -3156.510730 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.40352 -39.10326 -38.08685 -33.98517 -33.19948 -32.49345 -31.37834 -29.94029 -27.40265 -25.21496 -24.46047 -23.67595 -23.37091 -21.63422 -20.21891 -18.43583 -17.69306 -17.06322 -16.60275 -16.01739 -15.34877 -14.99665 -14.88991 -14.66663 -14.27235 -13.93771 -13.57437 -13.41534 -13.20280 -13.08135 -12.57300 -12.10015 -11.96127 -11.65782 -11.16626 -10.99242 -10.81229 -10.32424 -10.18708 -10.15195 -10.00266 -9.94987 -9.65270 -9.43884 -9.34473 -9.19829 -8.85419 -8.40406 -7.01527 -5.78956 -3.08759 0.72536 1.21230 3.03445 3.43149 3.49230 3.49724 3.56471 4.03291 4.32138 4.56771 4.74510 4.91808 4.95625 5.05873 5.24156 5.27367 5.34761 5.45976 5.54203 5.54959 5.70584 5.80617 5.94011 6.03352 6.10322 6.18463 6.24512 6.39398 6.43424 6.50374 6.57176 6.78589 6.90806 7.03935 7.12637 7.73701 7.76039 8.15122 8.39275 8.66145 9.50781 10.04248 10.39730 11.42896 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.013771 B = 0.006135 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.728641 B = 4562.828912 C = 5638.680558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.008 4.008 3 Si 0.903 3.097 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.233 4.233 8 H 0.069 0.931 9 N -0.698 5.698 10 C 0.172 3.828 11 C 0.117 3.883 12 N -0.675 5.675 13 C 0.561 3.439 14 O -0.553 6.553 15 C 0.089 3.911 16 C -0.118 4.118 17 C -0.085 4.085 18 C -0.159 4.159 19 C 0.099 3.901 20 N -0.450 5.450 21 C -0.149 4.149 22 C -0.128 4.128 23 C -0.144 4.144 24 H 0.255 0.745 25 H 0.387 0.613 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.415 0.585 29 H 0.146 0.854 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.162 0.838 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.104 -10.126 -9.773 14.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.734 3.266 4 H -0.219 1.219 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.364 4.364 8 H 0.087 0.913 9 N -0.338 5.338 10 C 0.079 3.921 11 C -0.009 4.009 12 N -0.324 5.324 13 C 0.345 3.655 14 O -0.432 6.432 15 C -0.050 4.050 16 C -0.139 4.139 17 C -0.111 4.111 18 C -0.179 4.179 19 C -0.060 4.060 20 N -0.162 5.162 21 C -0.189 4.189 22 C -0.166 4.166 23 C -0.182 4.182 24 H 0.064 0.936 25 H 0.222 0.778 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.252 0.748 29 H 0.164 0.836 30 H 0.156 0.844 31 H 0.155 0.845 32 H 0.179 0.821 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.670 -10.071 -8.887 13.448 hybrid contribution 0.056 1.176 -0.953 1.515 sum 0.726 -8.895 -9.840 13.284 Atomic orbital electron populations 1.69653 1.04992 1.25634 1.57429 1.24707 0.95445 0.97531 1.02736 0.86255 0.78773 0.84073 0.77491 1.21852 1.21814 1.20729 1.19075 0.90978 0.83598 1.42707 0.91261 1.42046 1.06019 0.98954 1.86829 1.20833 0.92498 0.87801 0.90971 1.21915 0.95292 0.99465 0.84222 1.45625 1.14842 1.67459 1.04472 1.17864 0.86296 0.78107 0.83208 1.90729 1.15031 1.50311 1.87097 1.21352 0.90683 0.98818 0.94130 1.22126 1.02010 0.97867 0.91879 1.21583 0.93981 0.96685 0.98887 1.22348 0.96089 1.00074 0.99360 1.22855 1.00186 0.95464 0.87535 1.67644 1.05554 1.09070 1.33883 1.23279 0.96130 1.00977 0.98527 1.22629 0.98698 0.99677 0.95550 1.23188 1.00173 0.97665 0.97186 0.93551 0.77807 0.91589 0.92524 0.74770 0.83606 0.84365 0.84475 0.82092 0.90571 0.91386 0.92809 0.89956 0.90528 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.19 13.07 55.49 0.73 -26.47 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.90 22.48 29.55 -169.99 -5.02 17.46 16 4 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.23 -6.19 9.23 -15.06 -0.14 -6.33 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.70 -16.31 4.56 -46.48 -0.21 -16.52 16 10 C 0.17 3.27 0.91 -131.00 -0.12 3.15 16 11 C 0.12 2.23 5.06 -4.04 -0.02 2.21 16 12 N -0.68 -12.98 5.38 -61.15 -0.33 -13.31 16 13 C 0.56 10.81 7.81 -12.18 -0.10 10.71 16 14 O -0.55 -11.63 16.32 5.35 0.09 -11.55 16 15 C 0.09 1.48 6.75 -83.01 -0.56 0.92 16 16 C -0.12 -1.61 9.63 -39.05 -0.38 -1.99 16 17 C -0.09 -0.89 10.17 -39.31 -0.40 -1.29 16 18 C -0.16 -1.57 10.11 -39.32 -0.40 -1.97 16 19 C 0.10 1.22 11.18 -17.56 -0.20 1.03 16 20 N -0.45 -7.25 9.54 -9.80 -0.09 -7.35 16 21 C -0.15 -2.62 7.27 -25.91 -0.19 -2.81 16 22 C -0.13 -2.07 7.99 -25.92 -0.21 -2.28 16 23 C -0.14 -2.32 7.37 -25.92 -0.19 -2.51 16 24 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.39 9.70 7.89 -40.82 -0.32 9.38 16 26 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 27 H 0.06 0.98 7.94 -51.93 -0.41 0.56 16 28 H 0.41 8.14 7.43 -40.82 -0.30 7.84 16 29 H 0.15 1.89 7.64 -52.49 -0.40 1.49 16 30 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 31 H 0.14 0.89 8.06 -52.48 -0.42 0.46 16 32 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.08 1.51 7.79 -51.93 -0.40 1.11 16 34 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.08 1.09 7.96 -51.93 -0.41 0.67 16 38 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 LS Contribution 326.32 15.07 4.92 4.92 Total: -1.00 -31.29 326.32 -8.09 -39.39 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -5.18 Total: 14.90 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -2.99 Total: -1.48 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: 0.09 Total: -63.64 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.29 -8.09 -39.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717146048.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.059 kcal (2) G-P(sol) polarization free energy of solvation -31.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds