Wall clock time and date at job start Mon Mar 30 2020 01:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99531 * 2 1 4 4 H 1.48501 * 109.47037 * 270.00610 * 3 2 1 5 5 H 1.48501 * 109.47161 * 30.00210 * 3 2 1 6 6 H 1.48496 * 109.47132 * 150.00084 * 3 2 1 7 7 C 1.38812 * 120.00432 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99731 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99756 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99852 * 185.77363 * 9 7 2 11 11 C 1.52997 * 112.91001 * 292.60309 * 10 9 7 12 12 N 1.46498 * 109.47054 * 311.32291 * 11 10 9 13 13 C 1.34775 * 119.99864 * 175.67839 * 12 11 10 14 14 O 1.21513 * 120.00134 * 0.02562 * 13 12 11 15 15 C 1.48171 * 119.99996 * 179.97438 * 13 12 11 16 16 C 1.39312 * 119.72237 * 179.97438 * 15 13 12 17 17 C 1.38592 * 119.05373 * 179.97438 * 16 15 13 18 18 C 1.38619 * 118.49273 * 359.97438 * 17 16 15 19 19 C 1.38561 * 119.35371 * 0.02562 * 18 17 16 20 20 N 1.31526 * 120.89785 * 359.73730 * 19 18 17 21 21 C 1.53785 * 113.60874 * 63.85293 * 10 9 7 22 22 C 1.53789 * 87.07833 * 89.11527 * 21 10 9 23 23 C 1.53778 * 87.08034 * 25.43326 * 22 21 10 24 24 H 0.96999 * 120.00558 * 359.97438 * 1 2 3 25 25 H 0.96996 * 119.99958 * 5.78216 * 9 7 2 26 26 H 1.09000 * 109.46869 * 71.32020 * 11 10 9 27 27 H 1.09003 * 109.47086 * 191.32029 * 11 10 9 28 28 H 0.96996 * 119.99980 * 355.67109 * 12 11 10 29 29 H 1.07990 * 120.46964 * 359.95833 * 16 15 13 30 30 H 1.08004 * 120.75393 * 180.02562 * 17 16 15 31 31 H 1.08008 * 120.32474 * 180.02562 * 18 17 16 32 32 H 1.08001 * 119.55106 * 179.97438 * 19 18 17 33 33 H 1.08994 * 113.61738 * 334.56854 * 21 10 9 34 34 H 1.09004 * 113.60796 * 203.66053 * 21 10 9 35 35 H 1.09006 * 113.60869 * 139.97985 * 22 21 10 36 36 H 1.08998 * 113.61124 * 270.87976 * 22 21 10 37 37 H 1.08999 * 113.61882 * 89.11380 * 23 22 21 38 38 H 1.09006 * 113.60882 * 219.93864 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4974 2.0466 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4404 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0528 -3.6536 0.1265 11 6 2.9291 -3.9617 -1.0892 12 7 2.1456 -3.7823 -2.3140 13 6 2.7371 -3.9145 -3.5177 14 8 3.9202 -4.1828 -3.5872 15 6 1.9445 -3.7337 -4.7565 16 6 2.5619 -3.8711 -5.9978 17 6 1.8073 -3.6996 -7.1475 18 6 0.4610 -3.3971 -7.0158 19 6 -0.0871 -3.2753 -5.7491 20 7 0.6511 -3.4478 -4.6743 21 6 2.7851 -3.8109 1.4696 22 6 1.4904 -4.4388 2.0123 23 6 1.1662 -4.8324 0.5615 24 1 -0.4851 0.8400 0.0004 25 1 0.3594 -2.3902 -0.0848 26 1 3.7834 -3.2849 -1.1021 27 1 3.2821 -4.9913 -1.0311 28 1 1.2011 -3.5686 -2.2585 29 1 3.6136 -4.1077 -6.0631 30 1 2.2578 -3.8002 -8.1239 31 1 -0.1549 -3.2576 -7.8921 32 1 -1.1356 -3.0392 -5.6428 33 1 3.0413 -2.8622 1.9411 34 1 3.6242 -4.5056 1.4305 35 1 1.6608 -5.2923 2.6686 36 1 0.7957 -3.7119 2.4332 37 1 1.5627 -5.8062 0.2742 38 1 0.1151 -4.7094 0.3003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717146048.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:10 Heat of formation + Delta-G solvation = 12.960998 kcal Electronic energy + Delta-G solvation = -21113.963109 eV Core-core repulsion = 17956.511028 eV Total energy + Delta-G solvation = -3157.452081 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.56763 -40.50037 -39.50540 -35.47724 -35.15914 -33.49956 -32.43400 -31.85015 -28.90772 -26.70310 -25.93518 -25.23874 -24.38120 -23.02724 -21.60791 -19.87644 -19.18632 -18.96968 -17.74148 -17.11154 -16.73748 -16.40891 -16.29411 -16.10686 -15.78538 -15.48313 -15.10369 -14.75457 -14.70895 -14.16015 -14.02006 -13.68605 -13.05924 -12.99635 -12.93447 -12.87898 -12.55546 -12.12991 -11.98903 -11.67022 -11.44441 -11.35493 -10.94300 -10.93285 -10.80646 -10.44982 -10.26548 -9.89436 -8.99417 -7.93344 -5.20502 -0.32025 0.29598 1.42478 1.43719 1.51005 1.74989 2.21776 2.53933 2.91818 3.21426 3.38104 3.75787 3.78995 3.86927 3.97163 3.98904 4.08026 4.08720 4.12444 4.22721 4.51789 4.62671 4.78711 4.80256 4.87315 4.91131 4.97263 5.09015 5.13357 5.16017 5.32401 5.40905 5.47257 5.62182 5.67767 5.72246 6.30078 6.50145 6.87508 7.18700 7.36110 8.09406 8.33584 9.29000 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.013771 B = 0.006135 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.728641 B = 4562.828912 C = 5638.680558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.066 4.066 3 Si 0.955 3.045 4 H -0.296 1.296 5 H -0.293 1.293 6 H -0.274 1.274 7 C -0.219 4.219 8 H 0.063 0.937 9 N -0.703 5.703 10 C 0.156 3.844 11 C 0.123 3.877 12 N -0.680 5.680 13 C 0.555 3.445 14 O -0.581 6.581 15 C 0.049 3.951 16 C -0.124 4.124 17 C -0.077 4.077 18 C -0.135 4.135 19 C 0.083 3.917 20 N -0.485 5.485 21 C -0.146 4.146 22 C -0.119 4.119 23 C -0.129 4.129 24 H 0.249 0.751 25 H 0.377 0.623 26 H 0.037 0.963 27 H 0.078 0.922 28 H 0.412 0.588 29 H 0.145 0.855 30 H 0.180 0.820 31 H 0.184 0.816 32 H 0.184 0.816 33 H 0.047 0.953 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.058 0.942 37 H 0.106 0.894 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.058 -11.373 -11.503 16.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.258 4.258 3 Si 0.786 3.214 4 H -0.224 1.224 5 H -0.220 1.220 6 H -0.200 1.200 7 C -0.351 4.351 8 H 0.081 0.919 9 N -0.342 5.342 10 C 0.064 3.936 11 C -0.003 4.003 12 N -0.327 5.327 13 C 0.340 3.660 14 O -0.463 6.463 15 C -0.087 4.087 16 C -0.145 4.145 17 C -0.103 4.103 18 C -0.154 4.154 19 C -0.077 4.077 20 N -0.197 5.197 21 C -0.186 4.186 22 C -0.156 4.156 23 C -0.167 4.167 24 H 0.058 0.942 25 H 0.210 0.790 26 H 0.056 0.944 27 H 0.096 0.904 28 H 0.249 0.751 29 H 0.163 0.837 30 H 0.198 0.802 31 H 0.201 0.799 32 H 0.201 0.799 33 H 0.066 0.934 34 H 0.115 0.885 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.124 0.876 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.545 -11.352 -10.603 15.543 hybrid contribution 0.099 1.491 -0.533 1.587 sum 0.644 -9.861 -11.136 14.889 Atomic orbital electron populations 1.69774 1.06002 1.25642 1.59634 1.25313 0.96191 1.00145 1.04176 0.85406 0.77973 0.81047 0.76963 1.22401 1.21969 1.19961 1.19238 0.90762 0.84903 1.40181 0.91923 1.42066 1.05555 0.99786 1.86803 1.21159 0.93610 0.87245 0.91584 1.21848 0.94296 0.99874 0.84258 1.45671 1.14595 1.67685 1.04788 1.18407 0.86320 0.77126 0.84102 1.90683 1.16203 1.51714 1.87676 1.21065 0.91326 1.02570 0.93775 1.22276 1.02352 0.97803 0.92040 1.22072 0.94031 0.94831 0.99338 1.22845 0.96206 0.96631 0.99741 1.23424 1.01070 0.95243 0.87937 1.67522 1.05637 1.10351 1.36182 1.23293 0.97768 1.00531 0.96995 1.22539 0.96944 1.00057 0.96108 1.23161 0.99472 0.97447 0.96582 0.94198 0.78999 0.94423 0.90401 0.75142 0.83745 0.80218 0.79910 0.79885 0.93407 0.88514 0.89440 0.92300 0.87617 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.64 13.07 21.65 0.28 -57.36 16 2 C -0.07 -3.74 5.50 84.86 0.47 -3.28 16 3 Si 0.96 47.21 29.55 68.60 2.03 49.24 16 4 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16 5 H -0.29 -14.44 7.11 99.48 0.71 -13.74 16 6 H -0.27 -13.05 7.11 99.48 0.71 -12.35 16 7 C -0.22 -11.95 9.23 84.03 0.78 -11.17 16 8 H 0.06 3.46 7.83 -2.91 -0.02 3.43 16 9 N -0.70 -33.67 4.56 -300.96 -1.37 -35.04 16 10 C 0.16 5.90 0.91 4.13 0.00 5.90 16 11 C 0.12 4.72 5.06 86.38 0.44 5.16 16 12 N -0.68 -26.86 5.38 -465.66 -2.50 -29.36 16 13 C 0.55 22.06 7.81 86.88 0.68 22.73 16 14 O -0.58 -25.27 16.32 -3.76 -0.06 -25.33 16 15 C 0.05 1.67 6.75 41.91 0.28 1.96 16 16 C -0.12 -3.26 9.63 22.61 0.22 -3.04 16 17 C -0.08 -1.34 10.17 22.45 0.23 -1.11 16 18 C -0.13 -2.13 10.11 22.44 0.23 -1.91 16 19 C 0.08 1.89 11.18 84.82 0.95 2.84 16 20 N -0.48 -15.62 9.54 -184.91 -1.76 -17.39 16 21 C -0.15 -5.01 7.27 31.12 0.23 -4.79 16 22 C -0.12 -3.65 7.99 31.12 0.25 -3.40 16 23 C -0.13 -3.94 7.37 31.12 0.23 -3.71 16 24 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 25 H 0.38 19.47 7.89 -92.71 -0.73 18.74 16 26 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.08 2.62 7.94 -2.39 -0.02 2.60 16 28 H 0.41 16.74 7.43 -92.71 -0.69 16.05 16 29 H 0.14 3.72 7.64 -2.92 -0.02 3.70 16 30 H 0.18 1.60 8.06 -2.91 -0.02 1.58 16 31 H 0.18 1.25 8.06 -2.91 -0.02 1.23 16 32 H 0.18 3.13 8.06 -2.91 -0.02 3.10 16 33 H 0.05 1.91 7.79 -2.39 -0.02 1.89 16 34 H 0.10 2.76 8.10 -2.39 -0.02 2.74 16 35 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.11 2.66 7.96 -2.39 -0.02 2.64 16 38 H 0.06 1.96 8.10 -2.38 -0.02 1.94 16 Total: -1.00 -71.07 326.32 1.24 -69.83 By element: Atomic # 1 Polarization: 39.55 SS G_CDS: -0.34 Total: 39.21 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: 4.97 Total: 6.20 kcal Atomic # 7 Polarization: -133.79 SS G_CDS: -5.36 Total: -139.15 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.06 Total: -25.33 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -71.07 1.24 -69.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717146048.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.794 kcal (2) G-P(sol) polarization free energy of solvation -71.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds